Wall clock time and date at job start Tue Mar 31 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47115 * 2 1 4 4 C 1.42903 * 114.00146 * 184.89671 * 3 2 1 5 5 H 1.09003 * 109.46972 * 8.04653 * 4 3 2 6 6 C 1.50703 * 109.47083 * 128.04482 * 4 3 2 7 7 O 1.21282 * 120.00102 * 3.43170 * 6 4 3 8 8 N 1.34776 * 120.00083 * 183.43926 * 6 4 3 9 9 C 1.46494 * 119.99896 * 184.79148 * 8 6 4 10 10 C 1.53005 * 109.47215 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.39999 * 304.83635 * 10 9 8 12 12 C 1.54291 * 109.40452 * 184.99758 * 10 9 8 13 13 N 1.48179 * 110.68977 * 200.48893 * 12 10 9 14 14 C 1.36940 * 118.51178 * 138.77446 * 13 12 10 15 15 H 1.08000 * 119.99878 * 205.96286 * 14 13 12 16 16 C 1.38817 * 120.00025 * 25.96640 * 14 13 12 17 17 N 1.31615 * 119.99718 * 15.47279 * 16 14 13 18 18 Si 1.86802 * 119.99840 * 195.47677 * 16 14 13 19 19 H 1.48498 * 109.47346 * 59.99919 * 18 16 14 20 20 H 1.48498 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46853 * 299.99611 * 18 16 14 22 22 C 1.44458 * 122.97503 * 318.79473 * 13 12 10 23 23 C 1.54869 * 109.32815 * 88.91614 * 22 13 12 24 24 C 1.47693 * 109.67925 * 290.10224 * 23 22 13 25 25 O 1.40524 * 109.40425 * 64.59346 * 10 9 8 26 26 C 1.52997 * 109.47374 * 248.04716 * 4 3 2 27 27 C 1.53000 * 109.47047 * 64.53276 * 26 4 3 28 28 C 1.52995 * 109.47084 * 304.52901 * 26 4 3 29 29 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47147 * 300.00074 * 1 2 3 31 31 H 1.09007 * 109.46728 * 59.99739 * 1 2 3 32 32 H 1.08997 * 109.47147 * 239.99926 * 2 1 3 33 33 H 1.08998 * 109.46766 * 120.00084 * 2 1 3 34 34 H 0.96998 * 119.99721 * 4.77969 * 8 6 4 35 35 H 1.09002 * 109.47182 * 299.98907 * 9 8 6 36 36 H 1.09002 * 109.47563 * 59.99501 * 9 8 6 37 37 H 1.08991 * 109.23536 * 320.80209 * 12 10 9 38 38 H 1.08996 * 109.23198 * 80.22464 * 12 10 9 39 39 H 0.97003 * 119.99777 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.49590 * 208.86801 * 22 13 12 41 41 H 1.09001 * 109.49909 * 328.95797 * 22 13 12 42 42 H 1.09005 * 109.44078 * 50.16259 * 23 22 13 43 43 H 1.09002 * 109.44327 * 170.07931 * 23 22 13 44 44 H 1.09003 * 108.64183 * 181.88165 * 24 23 22 45 45 H 1.08998 * 108.64402 * 299.72065 * 24 23 22 46 46 H 1.09003 * 109.46956 * 184.53546 * 26 4 3 47 47 H 1.08993 * 109.47050 * 302.94374 * 27 26 4 48 48 H 1.08994 * 109.46869 * 62.95057 * 27 26 4 49 49 H 1.09001 * 109.46923 * 182.94714 * 27 26 4 50 50 H 1.08998 * 109.47405 * 183.88392 * 28 26 4 51 51 H 1.08998 * 109.47846 * 303.88967 * 28 26 4 52 52 H 1.09006 * 109.46964 * 63.88739 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4264 1.4617 -0.1114 5 1 3.8548 0.4810 -0.3184 6 6 3.7676 2.4063 -1.2351 7 8 2.8830 2.9778 -1.8366 8 7 5.0557 2.6157 -1.5717 9 6 5.3936 3.6114 -2.5918 10 6 6.9112 3.6513 -2.7826 11 1 7.3922 3.8353 -1.8218 12 6 7.2748 4.7854 -3.7635 13 7 8.6173 4.5607 -4.3491 14 6 8.7999 4.8152 -5.6822 15 1 9.5750 4.2991 -6.2292 16 6 7.9888 5.7366 -6.3304 17 7 7.2610 6.5802 -5.6297 18 14 7.9302 5.7790 -8.1970 19 1 7.4607 4.4660 -8.7075 20 1 6.9950 6.8445 -8.6387 21 1 9.2881 6.0600 -8.7285 22 6 9.7421 4.0849 -3.5775 23 6 9.7575 2.5364 -3.5951 24 6 8.6254 2.0186 -2.8004 25 8 7.3500 2.4183 -3.2942 26 6 3.9991 2.0018 1.2005 27 6 3.7512 0.9892 2.3203 28 6 3.3151 3.3253 1.5490 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 5.7590 2.1073 -1.1384 35 1 4.9157 3.3429 -3.5339 36 1 5.0419 4.5925 -2.2726 37 1 6.5353 4.8192 -4.5634 38 1 7.2709 5.7361 -3.2305 39 1 6.6945 7.2243 -6.0827 40 1 10.6674 4.4628 -4.0123 41 1 9.6527 4.4361 -2.5495 42 1 9.6699 2.1844 -4.6231 43 1 10.6939 2.1780 -3.1676 44 1 8.6718 0.9296 -2.7963 45 1 8.7289 2.3728 -1.7748 46 1 5.0710 2.1652 1.0890 47 1 2.6830 0.7864 2.3969 48 1 4.2817 0.0636 2.0971 49 1 4.1123 1.3963 3.2648 50 1 3.7706 3.7445 2.4461 51 1 3.4330 4.0243 0.7210 52 1 2.2543 3.1499 1.7281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149721535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:22 Heat of formation + Delta-G solvation = -112.560671 kcal Electronic energy + Delta-G solvation = -30044.461061 eV Core-core repulsion = 26044.843946 eV Total energy + Delta-G solvation = -3999.617115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21350 -38.93386 -37.81081 -35.21929 -35.07781 -34.50974 -32.53984 -31.33226 -31.08469 -29.04057 -27.47791 -27.24230 -25.44692 -24.97489 -23.01983 -22.58297 -21.23382 -20.90201 -20.08243 -19.57711 -17.62087 -16.91053 -16.86479 -16.27836 -16.16331 -15.58220 -15.21433 -14.95963 -14.68289 -14.55923 -14.13215 -14.03291 -13.73628 -13.43417 -13.21652 -12.85969 -12.66612 -12.55826 -12.48409 -12.36677 -12.30644 -12.25258 -12.16621 -11.78600 -11.61193 -11.34462 -11.13939 -11.12276 -10.93829 -10.84497 -10.72684 -10.59859 -10.22975 -10.15846 -10.02133 -9.88169 -9.69037 -9.30584 -8.87785 -8.81451 -8.39168 -6.69393 -5.76938 -3.19742 2.71659 2.96342 3.41107 3.47552 3.49191 3.74615 4.27131 4.46150 4.51524 4.54199 4.69873 4.81634 4.89067 4.97532 5.12352 5.13504 5.18031 5.33792 5.38546 5.41506 5.45305 5.48853 5.53591 5.60992 5.61535 5.68519 5.72415 5.74669 5.83366 5.88999 5.92201 6.02024 6.02670 6.11445 6.22454 6.23629 6.32612 6.37182 6.47561 6.64672 6.75737 6.92179 6.96442 7.18193 7.58387 7.64654 7.82449 7.96511 8.37381 8.47327 9.22759 9.89441 10.33271 11.31049 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002929 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.466568 B = 9555.945670 C =10325.349111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.078 3.922 5 H 0.085 0.915 6 C 0.503 3.497 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.126 3.874 10 C 0.056 3.944 11 H 0.047 0.953 12 C 0.166 3.834 13 N -0.585 5.585 14 C -0.256 4.256 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.157 3.843 23 C -0.184 4.184 24 C 0.079 3.921 25 O -0.360 6.360 26 C -0.102 4.102 27 C -0.147 4.147 28 C -0.143 4.143 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.255 0.745 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.060 0.940 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -13.581 17.126 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.267 6.267 4 C 0.016 3.984 5 H 0.103 0.897 6 C 0.287 3.713 7 O -0.396 6.396 8 N -0.374 5.374 9 C 0.002 3.998 10 C -0.004 4.004 11 H 0.065 0.935 12 C 0.040 3.960 13 N -0.306 5.306 14 C -0.386 4.386 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.225 4.225 24 C 0.002 3.998 25 O -0.278 6.278 26 C -0.121 4.121 27 C -0.204 4.204 28 C -0.200 4.200 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.230 0.770 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.490 -12.929 16.526 21.963 hybrid contribution 0.721 -0.360 -0.728 1.086 sum -5.769 -13.290 15.797 21.435 Atomic orbital electron populations 1.21723 0.93551 1.02078 1.03410 1.22667 0.95974 0.83817 0.99952 1.88033 1.18773 1.26028 1.93894 1.22026 0.83940 0.98609 0.93804 0.89700 1.20650 0.82890 0.83305 0.84433 1.90726 1.46960 1.48986 1.52950 1.45962 1.07245 1.42055 1.42117 1.21577 0.94879 0.91671 0.91638 1.23177 0.92054 0.87582 0.97566 0.93511 1.21627 0.87996 0.91165 0.95209 1.43570 1.03716 1.76400 1.06951 1.19128 1.17315 1.17211 0.84916 0.91831 1.24999 1.00535 0.95734 0.98070 1.70010 1.30953 1.20001 1.34080 0.86374 0.77422 0.77242 0.85743 1.21021 1.21610 1.20985 1.20663 0.91695 0.90465 0.94281 1.22307 0.96825 1.01612 1.01710 1.21282 0.84813 0.98164 0.95522 1.87428 1.33238 1.36576 1.70563 1.21464 1.00083 0.97052 0.93513 1.21854 1.02317 0.98254 0.98020 1.21722 1.01342 0.95590 1.01326 0.91197 0.91855 0.91556 0.93344 0.93215 0.76980 0.90445 0.90197 0.89758 0.94530 0.93517 0.93143 0.95382 0.91130 0.92396 0.91631 0.94815 0.89938 0.91967 0.92768 0.92058 0.92686 0.92460 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.48 6.10 37.16 0.23 0.71 16 3 O -0.35 -4.35 8.27 -55.12 -0.46 -4.81 16 4 C 0.08 0.88 2.34 -27.88 -0.07 0.81 16 5 H 0.09 0.77 7.59 -51.93 -0.39 0.37 16 6 C 0.50 7.57 6.09 -10.98 -0.07 7.51 16 7 O -0.52 -10.29 16.51 -14.33 -0.24 -10.53 16 8 N -0.72 -10.07 5.34 -60.29 -0.32 -10.39 16 9 C 0.13 2.16 5.24 -4.04 -0.02 2.14 16 10 C 0.06 1.02 2.35 -26.05 -0.06 0.96 16 11 H 0.05 0.77 7.20 -51.93 -0.37 0.39 16 12 C 0.17 3.86 4.50 -2.44 -0.01 3.85 16 13 N -0.59 -14.32 2.59 -171.49 -0.44 -14.77 16 14 C -0.26 -6.98 9.43 -15.06 -0.14 -7.13 16 15 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 16 C 0.00 0.14 4.88 -17.43 -0.09 0.05 16 17 N -0.91 -26.08 10.97 55.49 0.61 -25.47 16 18 Si 0.90 22.05 29.58 -169.99 -5.03 17.02 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.16 3.17 5.68 -4.15 -0.02 3.15 16 23 C -0.18 -3.12 6.03 -28.31 -0.17 -3.29 16 24 C 0.08 1.22 6.04 34.59 0.21 1.43 16 25 O -0.36 -6.69 9.76 -34.09 -0.33 -7.02 16 26 C -0.10 -0.94 2.73 -90.62 -0.25 -1.19 16 27 C -0.15 -1.05 8.81 37.16 0.33 -0.73 16 28 C -0.14 -1.51 8.81 37.15 0.33 -1.19 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.05 0.36 7.08 -51.93 -0.37 -0.01 16 34 H 0.40 4.49 8.22 -40.82 -0.34 4.16 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 2.24 6.22 -51.93 -0.32 1.92 16 38 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 41 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.03 0.46 7.27 -51.93 -0.38 0.08 16 46 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 47 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 48 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.74 7.24 -51.93 -0.38 0.36 16 52 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -32.77 404.64 -9.11 -41.88 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.57 Total: 1.75 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 0.58 Total: 6.24 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.16 Total: -50.63 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.02 Total: -22.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.77 -9.11 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149721535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds