Wall clock time and date at job start Tue Mar 31 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.46856 * 2 1 4 4 C 1.42901 * 113.99874 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47442 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47135 * 64.99736 * 5 4 3 7 7 C 1.42904 * 114.00003 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47184 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00083 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00169 * 179.97438 * 8 7 6 11 11 C 1.46928 * 120.63197 * 0.02562 * 10 8 7 12 12 C 1.53184 * 108.77743 * 126.41095 * 11 10 8 13 13 C 1.53037 * 109.31223 * 54.63588 * 12 11 10 14 14 H 1.09004 * 109.46133 * 58.64227 * 13 12 11 15 15 C 1.53001 * 109.46089 * 178.61156 * 13 12 11 16 16 N 1.46497 * 109.47393 * 295.00365 * 15 13 12 17 17 C 1.36935 * 120.00298 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00267 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00268 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00127 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00531 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00628 * 21 19 17 25 25 C 1.53034 * 109.53894 * 298.63407 * 13 12 11 26 26 H 1.08998 * 109.49933 * 301.41072 * 25 13 12 27 27 C 1.53002 * 109.49935 * 181.31742 * 25 13 12 28 28 C 1.46928 * 120.63224 * 180.02562 * 10 8 7 29 29 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47123 * 299.99651 * 1 2 3 31 31 H 1.08998 * 109.47774 * 59.99592 * 1 2 3 32 32 H 1.09001 * 109.47123 * 240.00349 * 2 1 3 33 33 H 1.08998 * 109.47774 * 120.00408 * 2 1 3 34 34 H 1.08999 * 109.47074 * 59.99997 * 4 3 2 35 35 H 1.09003 * 109.47489 * 300.00532 * 4 3 2 36 36 H 1.09010 * 109.46746 * 304.99962 * 5 4 3 37 37 H 1.08999 * 109.47276 * 185.00549 * 5 4 3 38 38 H 1.09000 * 109.46774 * 60.00009 * 7 6 5 39 39 H 1.08997 * 109.46913 * 300.00424 * 7 6 5 40 40 H 1.09003 * 109.58130 * 6.62042 * 11 10 8 41 41 H 1.08997 * 109.58486 * 246.20515 * 11 10 8 42 42 H 1.09008 * 109.49761 * 294.68329 * 12 11 10 43 43 H 1.09002 * 109.50000 * 174.58990 * 12 11 10 44 44 H 1.09001 * 109.47183 * 174.99802 * 15 13 12 45 45 H 1.09004 * 109.47147 * 55.00212 * 15 13 12 46 46 H 0.96992 * 120.00013 * 359.97438 * 16 15 13 47 47 H 0.97000 * 119.99327 * 359.97438 * 20 19 17 48 48 H 1.09000 * 109.47459 * 59.99456 * 27 25 13 49 49 H 1.08993 * 109.47435 * 180.02562 * 27 25 13 50 50 H 1.09008 * 109.46886 * 299.99972 * 27 25 13 51 51 H 1.08999 * 109.58271 * 353.37917 * 28 10 8 52 52 H 1.08999 * 109.58397 * 113.65388 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 8 3.3985 3.5448 1.2217 7 6 3.7194 4.9335 1.3244 8 6 3.2262 5.4667 2.6447 9 8 2.6557 4.7301 3.4212 10 7 3.4191 6.7621 2.9628 11 6 4.1080 7.6669 2.0324 12 6 3.2206 8.8913 1.7874 13 6 2.8560 9.5289 3.1299 14 1 3.7671 9.8134 3.6563 15 6 1.9982 10.7724 2.8874 16 7 2.7904 11.7821 2.1811 17 6 2.2286 12.9871 1.8533 18 1 1.2012 13.1930 2.1151 19 6 2.9795 13.9440 1.1845 20 7 4.2314 13.6931 0.8650 21 14 2.2128 15.5875 0.7367 22 1 1.7687 16.2798 1.9732 23 1 3.2158 16.4262 0.0324 24 1 1.0443 15.3630 -0.1517 25 6 2.0706 8.5249 3.9768 26 1 1.1717 8.2211 3.4405 27 6 1.6782 9.1743 5.3055 28 6 2.9445 7.2965 4.2466 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8332 0.9768 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 3.3491 3.4419 -0.8413 37 1 4.9081 3.0255 -0.0900 38 1 3.2406 5.4781 0.5105 39 1 4.7999 5.0624 1.2616 40 1 4.2891 7.1520 1.0889 41 1 5.0565 7.9838 2.4659 42 1 2.3109 8.5839 1.2715 43 1 3.7596 9.6146 1.1755 44 1 1.6645 11.1757 3.8435 45 1 1.1310 10.5036 2.2840 46 1 3.7130 11.5971 1.9456 47 1 4.6293 12.8395 1.0972 48 1 1.0585 10.0501 5.1129 49 1 1.1193 8.4588 5.9085 50 1 2.5777 9.4765 5.8419 51 1 2.3580 6.5372 4.7639 52 1 3.7981 7.5808 4.8619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185760842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:08 Heat of formation + Delta-G solvation = -124.786725 kcal Electronic energy + Delta-G solvation = -28559.448584 eV Core-core repulsion = 24559.301307 eV Total energy + Delta-G solvation = -4000.147277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41079 -38.83000 -38.14011 -37.18033 -35.16401 -33.81916 -32.25210 -32.05572 -30.26015 -29.96828 -28.28737 -26.79398 -25.71936 -23.51991 -23.10170 -22.90998 -22.64375 -21.53607 -20.07582 -19.15872 -17.70360 -17.30881 -17.24052 -16.90338 -16.31431 -16.15946 -15.59569 -15.21557 -14.95566 -14.74204 -14.57387 -14.03544 -13.93687 -13.76491 -13.59558 -13.37364 -13.14078 -13.02496 -12.81477 -12.58156 -12.47698 -12.28364 -11.99330 -11.89921 -11.77327 -11.67742 -11.59546 -11.28294 -10.96177 -10.75124 -10.70515 -10.46249 -10.31059 -10.16268 -10.01700 -9.94839 -9.92644 -9.71623 -9.17359 -8.87262 -8.65099 -6.99082 -6.11020 -3.09901 2.50621 2.57695 3.32099 3.51354 3.54695 3.56071 3.72043 4.35774 4.61975 4.65013 4.69694 4.71779 4.77468 4.84565 4.87040 4.90246 4.91619 4.97286 5.01520 5.02925 5.04938 5.07419 5.23370 5.30830 5.36239 5.43045 5.45503 5.60052 5.60112 5.65338 5.73819 5.79541 5.82651 5.84097 5.85944 5.94773 6.15967 6.20725 6.24361 6.36766 6.42293 6.50619 6.72937 6.76561 6.85094 6.90821 7.29875 7.81045 8.09781 8.75433 9.23272 10.09484 10.24788 11.37644 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002095 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.503191 B =13361.096113 C =14007.123338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.355 6.355 7 C 0.045 3.955 8 C 0.517 3.483 9 O -0.524 6.524 10 N -0.609 5.609 11 C 0.104 3.896 12 C -0.126 4.126 13 C -0.090 4.090 14 H 0.071 0.929 15 C 0.162 3.838 16 N -0.743 5.743 17 C -0.329 4.329 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.079 2.921 22 H -0.296 1.296 23 H -0.285 1.285 24 H -0.296 1.296 25 C -0.097 4.097 26 H 0.073 0.927 27 C -0.147 4.147 28 C 0.120 3.880 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.017 0.983 46 H 0.366 0.634 47 H 0.253 0.747 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.090 0.910 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -25.255 -0.363 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.274 6.274 7 C -0.035 4.035 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.344 5.344 11 C -0.018 4.018 12 C -0.164 4.164 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.034 3.966 16 N -0.389 5.389 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.591 5.591 21 Si 0.910 3.090 22 H -0.223 1.223 23 H -0.211 1.211 24 H -0.223 1.223 25 C -0.117 4.117 26 H 0.092 0.908 27 C -0.205 4.205 28 C -0.002 4.002 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.109 0.891 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.249 -24.092 -0.477 24.098 hybrid contribution 0.340 -1.493 0.335 1.568 sum 0.090 -25.585 -0.142 25.585 Atomic orbital electron populations 1.21739 0.93662 1.02132 1.03404 1.22456 0.95835 0.83820 0.99830 1.87998 1.20337 1.26233 1.95355 1.22477 0.82456 0.95289 1.00868 1.22602 0.98435 0.92912 0.87613 1.88074 1.80843 1.20767 1.37670 1.22250 1.00417 0.84405 0.96447 1.20159 0.79681 0.81760 0.88011 1.90709 1.41375 1.56666 1.51233 1.48084 1.58238 1.08505 1.19564 1.21898 0.95843 0.91363 0.92712 1.21934 1.00136 0.96080 0.98286 1.21355 0.99268 0.95244 0.95027 0.91057 1.20695 0.93198 0.87468 0.95200 1.42378 1.12143 1.14616 1.69727 1.20032 0.97711 0.93226 1.35002 0.91881 1.25753 0.96314 1.03407 0.98931 1.70898 1.12813 1.25344 1.50044 0.83246 0.74527 0.75246 0.75953 1.22302 1.21051 1.22315 1.21446 0.98570 0.94474 0.97163 0.90816 1.21830 1.01748 1.00932 0.95951 1.21688 0.98265 0.96001 0.84271 0.91175 0.91585 0.91878 0.93621 0.93380 0.91719 0.92318 0.92078 0.91516 0.90058 0.90343 0.90170 0.90863 0.91573 0.89628 0.95658 0.96472 0.80094 0.93542 0.91317 0.92855 0.92517 0.89119 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.24 10.31 -40.08 -0.41 -4.66 16 4 C 0.07 0.56 6.32 37.16 0.23 0.79 16 5 C 0.06 0.53 6.32 37.16 0.23 0.77 16 6 O -0.36 -4.55 9.84 -59.73 -0.59 -5.14 16 7 C 0.04 0.48 4.76 36.00 0.17 0.65 16 8 C 0.52 7.29 7.77 -10.99 -0.09 7.20 16 9 O -0.52 -9.51 15.91 -14.36 -0.23 -9.74 16 10 N -0.61 -7.69 2.97 -172.79 -0.51 -8.20 16 11 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 12 C -0.13 -1.77 5.25 -26.62 -0.14 -1.90 16 13 C -0.09 -1.37 1.73 -90.58 -0.16 -1.53 16 14 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.16 3.19 5.41 -4.04 -0.02 3.17 16 16 N -0.74 -18.26 5.32 -59.91 -0.32 -18.58 16 17 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 18 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 19 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 20 N -0.95 -28.81 13.70 55.49 0.76 -28.05 16 21 Si 1.08 25.85 29.92 -169.99 -5.09 20.76 16 22 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.10 -1.29 2.41 -90.52 -0.22 -1.51 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 C -0.15 -1.82 8.82 37.16 0.33 -1.49 16 28 C 0.12 1.52 5.71 -3.73 -0.02 1.50 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 39 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 40 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 44 H 0.03 0.51 6.14 -51.93 -0.32 0.20 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.37 9.04 5.68 -40.82 -0.23 8.81 16 47 H 0.25 7.54 6.77 -40.82 -0.28 7.26 16 48 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 51 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 52 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 409.43 15.07 6.17 6.17 Total: -1.00 -35.93 409.43 -8.94 -44.87 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -9.40 Total: 4.66 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.68 Total: -2.09 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.07 Total: -54.83 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.23 Total: -19.54 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.93 -8.94 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185760842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.918 kcal (2) G-P(sol) polarization free energy of solvation -35.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds