Wall clock time and date at job start Tue Mar 31 2020 04:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47367 * 2 1 4 4 C 1.42896 * 113.99945 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47268 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46645 * 65.00144 * 5 4 3 7 7 C 1.42905 * 113.99572 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46722 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00337 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99583 * 179.97438 * 8 7 6 11 11 C 1.46922 * 120.63168 * 359.97438 * 10 8 7 12 12 C 1.53196 * 108.77606 * 233.58995 * 11 10 8 13 13 C 1.53037 * 109.31040 * 305.36550 * 12 11 10 14 14 H 1.09006 * 109.46385 * 301.34352 * 13 12 11 15 15 C 1.53000 * 109.46000 * 181.38842 * 13 12 11 16 16 N 1.46507 * 109.47390 * 64.99825 * 15 13 12 17 17 C 1.36930 * 119.99857 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00592 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99550 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00097 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46975 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47110 * 120.00194 * 21 19 17 24 24 H 1.48498 * 109.46663 * 240.00244 * 21 19 17 25 25 C 1.53039 * 109.54101 * 61.36876 * 13 12 11 26 26 H 1.08993 * 109.52527 * 58.59948 * 25 13 12 27 27 C 1.52998 * 109.50028 * 178.68208 * 25 13 12 28 28 C 1.46931 * 120.62785 * 179.97438 * 10 8 7 29 29 H 1.08994 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46733 * 300.00041 * 1 2 3 31 31 H 1.09000 * 109.47330 * 59.99708 * 1 2 3 32 32 H 1.08999 * 109.47218 * 240.00035 * 2 1 3 33 33 H 1.09000 * 109.47330 * 120.00292 * 2 1 3 34 34 H 1.09005 * 109.47547 * 59.99856 * 4 3 2 35 35 H 1.09005 * 109.47243 * 300.00159 * 4 3 2 36 36 H 1.08999 * 109.47040 * 304.99888 * 5 4 3 37 37 H 1.08997 * 109.47046 * 185.00074 * 5 4 3 38 38 H 1.08998 * 109.46827 * 59.99853 * 7 6 5 39 39 H 1.08996 * 109.47061 * 299.99743 * 7 6 5 40 40 H 1.08999 * 109.58543 * 113.80083 * 11 10 8 41 41 H 1.09003 * 109.70593 * 353.44277 * 11 10 8 42 42 H 1.08999 * 109.50112 * 65.32084 * 12 11 10 43 43 H 1.09004 * 109.49641 * 185.41325 * 12 11 10 44 44 H 1.08998 * 109.47710 * 185.00022 * 15 13 12 45 45 H 1.08999 * 109.47392 * 304.99945 * 15 13 12 46 46 H 0.96994 * 119.99417 * 0.02562 * 16 15 13 47 47 H 0.96997 * 119.99869 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.47403 * 179.83059 * 27 25 13 49 49 H 1.09001 * 109.46940 * 299.83728 * 27 25 13 50 50 H 1.09010 * 109.46871 * 59.83556 * 27 25 13 51 51 H 1.09000 * 109.57916 * 246.19424 * 28 10 8 52 52 H 1.08997 * 109.58813 * 6.62026 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3987 3.5457 1.2199 7 6 3.7196 4.9345 1.3214 8 6 3.2253 5.4691 2.6409 9 8 2.6540 4.7334 3.4176 10 7 3.4180 6.7648 2.9577 11 6 4.1088 7.6682 2.0275 12 6 5.2659 8.3470 2.7671 13 6 4.7294 9.0317 4.0263 14 1 3.9703 9.7624 3.7470 15 6 5.8766 9.7401 4.7494 16 7 6.3895 10.8238 3.9075 17 6 7.4259 11.6021 4.3493 18 1 7.8655 11.4169 5.3183 19 6 7.9122 12.6286 3.5513 20 7 7.3768 12.8541 2.3703 21 14 9.3265 13.6900 4.1538 22 1 9.7473 13.2345 5.5031 23 1 10.4695 13.5719 3.2132 24 1 8.8872 15.1068 4.2236 25 6 4.1113 7.9838 4.9548 26 1 4.8632 7.2390 5.2152 27 6 3.6047 8.6648 6.2278 28 6 2.9414 7.3008 4.2401 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8333 0.9766 -0.8908 35 1 3.8340 0.9763 0.8892 36 1 3.3494 3.4411 -0.8430 37 1 4.9083 3.0253 -0.0912 38 1 3.2409 5.4784 0.5071 39 1 4.8001 5.0633 1.2587 40 1 3.4115 8.4246 1.6672 41 1 4.4985 7.0989 1.1836 42 1 6.0073 7.5989 3.0476 43 1 5.7269 9.0907 2.1170 44 1 5.5134 10.1522 5.6909 45 1 6.6758 9.0263 4.9497 46 1 5.9949 10.9899 3.0372 47 1 7.7163 13.5716 1.8128 48 1 3.1618 7.9186 6.8874 49 1 4.4376 9.1506 6.7360 50 1 2.8536 9.4104 5.9667 51 1 2.1488 8.0272 4.0604 52 1 2.5610 6.4871 4.8575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185760843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:10 Heat of formation + Delta-G solvation = -125.428419 kcal Electronic energy + Delta-G solvation = -28452.482534 eV Core-core repulsion = 24452.307432 eV Total energy + Delta-G solvation = -4000.175103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35009 -38.79673 -38.08927 -37.13948 -34.98822 -33.62911 -32.22098 -31.96728 -30.34318 -29.96846 -28.25592 -26.90355 -25.72753 -23.68522 -23.10128 -22.88522 -22.51252 -21.35144 -20.00553 -19.09685 -17.66883 -17.28641 -17.09116 -16.82515 -16.24126 -16.15904 -15.55435 -15.08257 -14.88216 -14.77728 -14.42630 -13.97248 -13.93190 -13.69254 -13.52786 -13.34462 -13.07211 -12.90736 -12.61773 -12.51365 -12.46864 -12.23430 -11.91200 -11.83392 -11.76281 -11.59923 -11.58697 -11.26753 -11.00631 -10.89777 -10.82735 -10.38575 -10.28666 -10.18152 -9.98775 -9.95663 -9.91188 -9.66088 -9.64266 -8.87749 -8.59082 -6.91529 -5.78518 -3.06109 2.56162 2.62422 3.33172 3.41822 3.48000 3.49832 3.60551 4.40769 4.57491 4.64462 4.72027 4.75645 4.81233 4.88358 4.92011 4.94376 4.96136 5.01348 5.03398 5.08025 5.09579 5.11430 5.29940 5.32865 5.43679 5.44382 5.52452 5.56817 5.59555 5.71447 5.80745 5.81417 5.87114 5.91936 5.98007 6.07129 6.23239 6.28874 6.32707 6.44188 6.50259 6.62243 6.76818 6.83665 6.91733 6.93584 7.35874 7.69725 8.14997 8.41051 9.52359 10.10769 10.45413 11.44562 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.001998 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.586602 B =14010.414346 C =14939.471923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.356 6.356 7 C 0.044 3.956 8 C 0.517 3.483 9 O -0.526 6.526 10 N -0.608 5.608 11 C 0.104 3.896 12 C -0.126 4.126 13 C -0.089 4.089 14 H 0.073 0.927 15 C 0.156 3.844 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.097 4.097 26 H 0.073 0.927 27 C -0.147 4.147 28 C 0.120 3.880 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.025 0.975 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 -22.182 -5.958 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.274 6.274 7 C -0.035 4.035 8 C 0.304 3.696 9 O -0.401 6.401 10 N -0.343 5.343 11 C -0.019 4.019 12 C -0.164 4.164 13 C -0.108 4.108 14 H 0.091 0.909 15 C 0.028 3.972 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.117 4.117 26 H 0.091 0.909 27 C -0.205 4.205 28 C -0.002 4.002 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.124 -22.477 -5.292 25.631 hybrid contribution 1.173 0.754 -0.356 1.439 sum -9.951 -21.723 -5.648 24.553 Atomic orbital electron populations 1.21736 0.93701 1.02121 1.03340 1.22455 0.95792 0.83858 0.99864 1.87986 1.20408 1.26210 1.95365 1.22486 0.82366 0.95348 1.00911 1.22598 0.98524 0.92836 0.87581 1.88075 1.80800 1.20813 1.37687 1.22257 1.00584 0.84316 0.96374 1.20152 0.79737 0.81685 0.88054 1.90705 1.41581 1.56656 1.51179 1.48089 1.58025 1.08690 1.19530 1.21908 0.95038 0.93231 0.91693 1.21942 0.96545 1.00196 0.97757 1.21337 0.98508 0.96255 0.94682 0.90909 1.20762 0.92609 0.90141 0.93641 1.42381 1.40272 1.35326 1.19627 1.19281 1.08140 1.08600 1.00746 0.91227 1.24720 1.00086 0.99576 0.96686 1.69658 1.44215 1.33865 1.10600 0.86134 0.82057 0.80369 0.77754 1.20597 1.21931 1.21902 1.21457 0.97141 0.97623 0.95471 0.90905 1.21831 1.01765 1.00269 0.96595 1.21695 0.96151 0.98488 0.83899 0.91189 0.91604 0.91920 0.93628 0.93355 0.91734 0.92262 0.92158 0.91447 0.90230 0.90156 0.90828 0.90242 0.91735 0.89175 0.95754 0.96567 0.78337 0.93626 0.92974 0.91311 0.92486 0.91422 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.17 10.31 -40.08 -0.41 -4.58 16 4 C 0.07 0.56 6.32 37.16 0.23 0.79 16 5 C 0.06 0.54 6.32 37.16 0.23 0.77 16 6 O -0.36 -4.58 9.84 -59.73 -0.59 -5.17 16 7 C 0.04 0.49 4.77 36.01 0.17 0.66 16 8 C 0.52 7.33 7.78 -10.98 -0.09 7.24 16 9 O -0.53 -9.58 15.91 -14.35 -0.23 -9.81 16 10 N -0.61 -7.73 2.97 -172.78 -0.51 -8.24 16 11 C 0.10 1.16 6.34 -3.71 -0.02 1.14 16 12 C -0.13 -1.76 5.25 -26.61 -0.14 -1.90 16 13 C -0.09 -1.35 1.73 -90.58 -0.16 -1.50 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C 0.16 3.01 5.41 -4.04 -0.02 2.99 16 16 N -0.73 -17.82 5.32 -59.90 -0.32 -18.14 16 17 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.10 -1.28 2.41 -90.51 -0.22 -1.50 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.15 -1.79 8.82 37.16 0.33 -1.47 16 28 C 0.12 1.53 5.71 -3.72 -0.02 1.51 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 39 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.70 5.95 -51.93 -0.31 0.39 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 44 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 9.67 6.85 -40.82 -0.28 9.39 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.90 6.30 -51.93 -0.33 0.58 16 50 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -34.56 411.15 -8.99 -43.55 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -9.51 Total: 4.38 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.68 Total: 1.55 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.23 Total: -19.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.56 -8.99 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185760843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.873 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds