Wall clock time and date at job start Tue Mar 31 2020 04:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42908 * 109.47159 * 2 1 4 4 C 1.42897 * 113.99820 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46874 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47028 * 64.99818 * 5 4 3 7 7 C 1.42900 * 113.99803 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46799 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00250 * 0.02562 * 8 7 6 10 10 N 1.34787 * 119.99793 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.62918 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77227 * 233.33389 * 11 10 8 13 13 C 1.53038 * 109.31606 * 305.36475 * 12 11 10 14 14 H 1.09007 * 109.46048 * 301.34968 * 13 12 11 15 15 C 1.52996 * 109.46375 * 181.37737 * 13 12 11 16 16 N 1.46497 * 109.47382 * 64.99777 * 15 13 12 17 17 C 1.36939 * 119.99775 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00374 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99759 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00137 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47271 * 89.99619 * 21 19 17 23 23 H 1.48502 * 109.47192 * 209.99388 * 21 19 17 24 24 H 1.48496 * 109.47018 * 329.99553 * 21 19 17 25 25 C 1.53041 * 109.53768 * 61.36503 * 13 12 11 26 26 H 1.08998 * 109.49600 * 178.68449 * 25 13 12 27 27 C 1.53001 * 109.49679 * 58.58890 * 25 13 12 28 28 C 1.46924 * 120.63033 * 179.72182 * 10 8 7 29 29 H 1.08995 * 109.47361 * 59.99810 * 1 2 3 30 30 H 1.08999 * 109.46793 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47020 * 299.99598 * 1 2 3 32 32 H 1.09004 * 109.47020 * 240.00402 * 2 1 3 33 33 H 1.08995 * 109.47361 * 120.00190 * 2 1 3 34 34 H 1.08995 * 109.47428 * 60.00173 * 4 3 2 35 35 H 1.09002 * 109.47184 * 299.99675 * 4 3 2 36 36 H 1.09002 * 109.46666 * 305.00380 * 5 4 3 37 37 H 1.08991 * 109.46875 * 185.00368 * 5 4 3 38 38 H 1.08997 * 109.46849 * 60.00305 * 7 6 5 39 39 H 1.08997 * 109.47159 * 300.00050 * 7 6 5 40 40 H 1.09002 * 109.58798 * 353.11768 * 11 10 8 41 41 H 1.08996 * 109.58371 * 113.54749 * 11 10 8 42 42 H 1.08999 * 109.50002 * 65.31872 * 12 11 10 43 43 H 1.09001 * 109.49774 * 185.38216 * 12 11 10 44 44 H 1.09000 * 109.47420 * 185.00167 * 15 13 12 45 45 H 1.09003 * 109.46657 * 304.99766 * 15 13 12 46 46 H 0.97003 * 119.99848 * 359.97438 * 16 15 13 47 47 H 0.96997 * 120.00238 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.46841 * 60.00225 * 27 25 13 49 49 H 1.09001 * 109.47156 * 179.97438 * 27 25 13 50 50 H 1.08997 * 109.47018 * 300.00258 * 27 25 13 51 51 H 1.09003 * 109.58516 * 246.45674 * 28 10 8 52 52 H 1.09002 * 109.58479 * 6.87832 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9385 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3244 8 6 3.2262 5.4666 2.6448 9 8 2.6565 4.7298 3.4217 10 7 3.4191 6.7621 2.9629 11 6 4.1079 7.6668 2.0324 12 6 5.2620 8.3499 2.7727 13 6 4.7222 9.0341 4.0307 14 1 3.9610 9.7621 3.7499 15 6 5.8665 9.7464 4.7545 16 7 6.3771 10.8309 3.9123 17 6 7.4107 11.6127 4.3546 18 1 7.8498 11.4295 5.3242 19 6 7.8948 12.6400 3.5563 20 7 8.8880 13.3917 3.9817 21 14 7.1359 12.9563 1.8790 22 1 6.0179 13.9241 2.0161 23 1 8.1659 13.5158 0.9672 24 1 6.6206 11.6806 1.3204 25 6 4.1063 7.9851 4.9594 26 1 3.7430 8.4699 5.8655 27 6 5.1651 6.9433 5.3263 28 6 2.9386 7.2980 4.2438 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9765 0.8892 36 1 3.3491 3.4419 -0.8412 37 1 4.9081 3.0255 -0.0900 38 1 3.2406 5.4781 0.5106 39 1 4.7999 5.0624 1.2616 40 1 4.5005 7.0960 1.1910 41 1 3.4086 8.4207 1.6708 42 1 6.0055 7.6043 3.0546 43 1 5.7217 9.0940 2.1222 44 1 5.5009 10.1583 5.6952 45 1 6.6674 9.0351 4.9562 46 1 5.9834 10.9947 3.0409 47 1 9.2265 14.1093 3.4237 48 1 5.9967 7.4332 5.8328 49 1 4.7261 6.1967 5.9881 50 1 5.5268 6.4581 4.4198 51 1 2.1441 8.0218 4.0621 52 1 2.5596 6.4837 4.8614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185760844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:12 Heat of formation + Delta-G solvation = -117.978478 kcal Electronic energy + Delta-G solvation = -28782.747561 eV Core-core repulsion = 24782.895512 eV Total energy + Delta-G solvation = -3999.852049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54842 -38.89401 -38.20903 -37.20602 -35.12223 -33.53474 -32.26178 -31.88512 -30.70903 -29.99992 -28.25813 -27.33045 -25.97389 -23.57302 -23.13549 -23.06639 -22.89974 -21.34582 -20.12256 -18.50818 -17.83234 -17.43957 -17.26103 -16.98673 -16.30824 -16.17805 -15.63640 -15.20005 -15.00478 -14.93345 -14.39333 -14.19004 -14.04666 -13.76807 -13.70599 -13.46287 -13.08820 -12.90905 -12.81728 -12.59424 -12.48945 -12.41756 -12.23760 -11.83236 -11.66316 -11.61093 -11.48490 -11.40957 -11.30117 -11.07013 -10.84235 -10.50281 -10.30913 -10.18708 -10.09410 -10.04480 -9.95341 -9.72056 -9.59728 -8.90601 -8.67351 -7.23563 -5.78383 -3.13557 2.49788 2.55222 3.29132 3.32072 3.35801 3.42086 3.53632 4.32919 4.56316 4.59143 4.64857 4.68463 4.75536 4.80434 4.83617 4.86068 4.87774 4.94887 4.98873 5.00232 5.02964 5.05169 5.14515 5.27573 5.31435 5.39903 5.44443 5.51671 5.56275 5.61789 5.70958 5.72542 5.76230 5.78167 5.83087 5.92425 6.11046 6.16399 6.28108 6.30073 6.35823 6.51508 6.68499 6.72203 6.81891 6.87606 7.27799 7.98530 8.08482 8.40715 9.20041 9.92248 10.12320 11.40216 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002163 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.622964 B =12940.682396 C =13666.801933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.066 3.934 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.044 3.956 8 C 0.517 3.483 9 O -0.523 6.523 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.131 4.131 13 C -0.093 4.093 14 H 0.071 0.929 15 C 0.162 3.838 16 N -0.755 5.755 17 C -0.242 4.242 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 C -0.098 4.098 26 H 0.084 0.916 27 C -0.145 4.145 28 C 0.119 3.881 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 -24.144 -9.718 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.273 6.273 7 C -0.036 4.036 8 C 0.304 3.696 9 O -0.398 6.398 10 N -0.341 5.341 11 C -0.019 4.019 12 C -0.169 4.169 13 C -0.112 4.112 14 H 0.090 0.910 15 C 0.035 3.965 16 N -0.401 5.401 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.117 4.117 26 H 0.102 0.898 27 C -0.202 4.202 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.192 0.808 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.147 -24.413 -9.006 29.618 hybrid contribution 0.053 0.449 -1.554 1.619 sum -14.093 -23.965 -10.560 29.740 Atomic orbital electron populations 1.21737 0.93690 1.02145 1.03326 1.22460 0.95798 0.83826 0.99888 1.87985 1.20390 1.26248 1.95372 1.22482 0.82389 0.95304 1.00944 1.22598 0.98511 0.92890 0.87527 1.88078 1.80785 1.20769 1.37677 1.22255 1.00536 0.84408 0.96375 1.20129 0.79745 0.81671 0.88032 1.90713 1.41476 1.56492 1.51127 1.48027 1.58012 1.08628 1.19479 1.21883 0.94971 0.93273 0.91745 1.22008 0.96997 1.00344 0.97557 1.21361 0.98548 0.96269 0.95000 0.91021 1.20700 0.93013 0.89553 0.93223 1.42731 1.41596 1.37088 1.18701 1.19069 1.07601 1.08023 1.02546 0.89301 1.24683 0.98262 0.98163 0.98192 1.69702 1.28521 1.22305 1.37750 0.86539 0.78637 0.77755 0.85468 1.21140 1.21801 1.20417 1.21469 0.95581 0.96152 0.98512 0.89754 1.21863 0.98873 0.98231 1.01281 1.21695 0.95888 0.98615 0.84139 0.91930 0.91165 0.91606 0.93613 0.93329 0.91711 0.92239 0.92192 0.91455 0.90313 0.90232 0.90223 0.90963 0.90877 0.89959 0.95537 0.95246 0.80763 0.93093 0.91796 0.93155 0.92708 0.91466 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.38 -4.04 10.31 -40.09 -0.41 -4.45 16 4 C 0.07 0.53 6.32 37.16 0.23 0.77 16 5 C 0.06 0.51 6.32 37.16 0.23 0.74 16 6 O -0.36 -4.37 9.84 -59.73 -0.59 -4.96 16 7 C 0.04 0.45 4.77 36.00 0.17 0.62 16 8 C 0.52 6.87 7.78 -10.98 -0.09 6.78 16 9 O -0.52 -9.09 15.91 -14.36 -0.23 -9.32 16 10 N -0.61 -7.04 2.41 -172.75 -0.42 -7.46 16 11 C 0.10 1.05 6.34 -3.71 -0.02 1.02 16 12 C -0.13 -1.66 4.90 -26.62 -0.13 -1.79 16 13 C -0.09 -1.29 1.96 -90.58 -0.18 -1.47 16 14 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 15 C 0.16 2.97 5.18 -4.05 -0.02 2.95 16 16 N -0.76 -17.22 5.12 -59.91 -0.31 -17.52 16 17 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 20 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 21 Si 0.89 21.54 27.74 -169.99 -4.71 16.83 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 25 C -0.10 -1.18 2.72 -90.48 -0.25 -1.43 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 C -0.15 -1.82 8.38 37.16 0.31 -1.51 16 28 C 0.12 1.39 5.83 -3.69 -0.02 1.37 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 39 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 40 H 0.08 0.62 5.94 -51.93 -0.31 0.31 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 43 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.03 0.56 6.74 -51.93 -0.35 0.21 16 46 H 0.36 7.89 4.71 -40.82 -0.19 7.69 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -35.54 404.01 -8.49 -44.03 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -9.31 Total: 3.97 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 0.62 Total: 1.14 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.05 Total: -53.32 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.23 Total: -18.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.54 -8.49 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185760844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.949 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds