Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35985 * 117.00136 * 2 1 4 4 C 1.39039 * 119.88921 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.40475 * 180.02562 * 4 3 2 6 6 C 1.38666 * 120.16893 * 359.95084 * 5 4 3 7 7 O 1.35672 * 120.11022 * 180.29945 * 6 5 4 8 8 C 1.42901 * 116.99983 * 359.72276 * 7 6 5 9 9 C 1.40395 * 119.77168 * 0.02562 * 6 5 4 10 10 C 1.46788 * 120.19484 * 180.02562 * 9 6 5 11 11 O 1.21300 * 119.99937 * 359.97438 * 10 9 6 12 12 C 1.50694 * 120.00094 * 180.02562 * 10 9 6 13 13 N 1.46495 * 109.47252 * 180.02562 * 12 10 9 14 14 S 1.65607 * 120.00278 * 164.99985 * 13 12 10 15 15 O 1.42095 * 106.40474 * 178.53821 * 14 13 12 16 16 O 1.42107 * 106.40011 * 311.45724 * 14 13 12 17 17 C 1.76202 * 107.21823 * 64.99770 * 14 13 12 18 18 H 1.08002 * 119.99730 * 0.02562 * 17 14 13 19 19 C 1.37870 * 119.99878 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00220 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00049 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46930 * 59.99602 * 21 19 17 23 23 H 1.48495 * 109.47539 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47101 * 300.00034 * 21 19 17 25 25 C 1.38123 * 119.88360 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47305 * 300.00360 * 1 2 3 28 28 H 1.08999 * 109.46441 * 59.99872 * 1 2 3 29 29 H 1.08003 * 119.79479 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.91121 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47006 * 60.00133 * 8 7 6 32 32 H 1.09002 * 109.46944 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47529 * 299.99973 * 8 7 6 34 34 H 1.09004 * 109.47288 * 300.00262 * 12 10 9 35 35 H 1.08997 * 109.47274 * 59.99679 * 12 10 9 36 36 H 0.96997 * 120.00418 * 344.99968 * 13 12 10 37 37 H 0.97005 * 120.00298 * 180.02562 * 20 19 17 38 38 H 1.07997 * 120.09475 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2869 2.3762 0.0005 5 6 1.9025 3.6117 0.0000 6 6 3.2863 3.7008 0.0000 7 8 3.8901 4.9157 0.0056 8 6 3.0387 6.0633 0.0052 9 6 4.0603 2.5294 -0.0001 10 6 5.5258 2.6129 0.0004 11 8 6.0716 3.6962 0.0004 12 6 6.3523 1.3528 -0.0002 13 7 7.7750 1.7020 0.0011 14 16 8.9092 0.5536 0.3720 15 8 10.1755 1.1872 0.2535 16 8 8.4650 -0.0785 1.5647 17 6 8.8450 -0.6707 -0.8936 18 1 8.1445 -0.5680 -1.7092 19 6 9.6891 -1.7596 -0.8428 20 7 10.5425 -1.8843 0.1501 21 14 9.6206 -3.0579 -2.1841 22 1 9.9227 -2.4307 -3.4959 23 1 10.6223 -4.1167 -1.8999 24 1 8.2629 -3.6580 -2.2233 25 6 3.4259 1.2811 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 0.2087 2.3138 0.0005 30 1 1.3048 4.5112 0.0000 31 1 2.4060 6.0466 0.8926 32 1 3.6475 6.9674 0.0096 33 1 2.4131 6.0514 -0.8873 34 1 6.1216 0.7665 0.8893 35 1 6.1222 0.7678 -0.8906 36 1 8.0529 2.6058 -0.2152 37 1 11.1366 -2.6503 0.1857 38 1 4.0138 0.3751 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -166.290551 kcal Electronic energy + Delta-G solvation = -25696.171177 eV Core-core repulsion = 21631.759085 eV Total energy + Delta-G solvation = -4064.412092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.88222 -39.37258 -38.72127 -36.43544 -35.17106 -33.94022 -33.87253 -33.01991 -31.91396 -30.03489 -28.06643 -27.16048 -26.57356 -26.08760 -23.65100 -22.07958 -20.11243 -19.10107 -18.31424 -17.80694 -17.30302 -17.11205 -16.28476 -16.16417 -15.78124 -15.60445 -15.39426 -14.96392 -14.89939 -14.73262 -14.33082 -13.91671 -13.87275 -13.33050 -13.12392 -12.96076 -12.82437 -12.58077 -12.34835 -11.94370 -11.85764 -11.84299 -11.24325 -11.22476 -11.16333 -10.68510 -10.59133 -10.51446 -10.23445 -10.14288 -9.51003 -9.36624 -9.19951 -9.00750 -8.47999 -8.00868 -6.65873 -5.28439 0.45968 1.17323 2.36131 2.42436 2.96020 3.11522 3.12139 3.16458 3.22062 3.53762 3.98455 4.12155 4.34639 4.55531 4.68633 4.74512 4.76980 4.79142 4.85016 4.90425 4.92227 5.13097 5.18302 5.26497 5.29196 5.47588 5.65090 5.67946 5.76944 5.89536 5.92889 5.98894 6.17710 6.48283 6.84170 7.02279 7.20702 7.35657 7.69210 7.96017 8.03042 8.92616 10.28344 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003577 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.929540 B = 7826.720868 C = 9354.812369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.078 3.922 4 C -0.137 4.137 5 C -0.187 4.187 6 C 0.149 3.851 7 O -0.284 6.284 8 C 0.023 3.977 9 C -0.158 4.158 10 C 0.393 3.607 11 O -0.425 6.425 12 C 0.084 3.916 13 N -1.130 6.130 14 S 2.716 3.284 15 O -1.003 7.003 16 O -1.006 7.006 17 C -1.022 5.022 18 H 0.103 0.897 19 C 0.133 3.867 20 N -0.845 5.845 21 Si 0.921 3.079 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.065 4.065 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.291 0.709 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 8.340 -2.228 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.033 3.967 4 C -0.156 4.156 5 C -0.206 4.206 6 C 0.102 3.898 7 O -0.196 6.196 8 C -0.073 4.073 9 C -0.161 4.161 10 C 0.268 3.732 11 O -0.298 6.298 12 C -0.044 4.044 13 N -0.887 5.887 14 S 2.816 3.184 15 O -0.993 6.993 16 O -0.996 6.996 17 C -1.155 5.155 18 H 0.121 0.879 19 C -0.085 4.085 20 N -0.474 5.474 21 Si 0.745 3.255 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.084 4.084 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.243 0.757 37 H 0.102 0.898 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.464 8.558 -1.295 24.074 hybrid contribution -0.911 -0.377 -1.354 1.675 sum -23.375 8.181 -2.649 24.906 Atomic orbital electron populations 1.23050 0.78575 1.04110 1.01037 1.86143 1.21107 1.26082 1.89341 1.18706 0.92050 0.84479 1.01421 1.21227 1.00200 0.91617 1.02522 1.20991 0.92932 0.98626 1.08004 1.19147 0.90615 0.85467 0.94599 1.86338 1.34506 1.11567 1.87156 1.23140 0.95782 0.87345 1.01003 1.19735 0.95048 0.90701 1.10603 1.22310 0.87485 0.91068 0.72344 1.90538 1.73875 1.30718 1.34694 1.21343 0.82616 0.95972 1.04519 1.55895 1.15788 1.27195 1.89833 1.00401 0.70644 0.72420 0.74932 1.93379 1.40179 1.77378 1.88386 1.93355 1.81855 1.75805 1.48603 1.30530 1.31646 1.24427 1.28925 0.87907 1.24736 0.91138 0.97117 0.95481 1.69891 1.18008 1.30331 1.29201 0.86201 0.78929 0.79356 0.81063 1.18897 1.20171 1.18794 1.20682 0.91816 0.97449 0.98443 0.88109 0.92783 0.92820 0.84835 0.84620 0.92696 0.87953 0.92718 0.87136 0.88491 0.75659 0.89832 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.24 10.49 -19.69 -0.21 -3.45 16 3 C 0.08 0.85 6.67 -39.33 -0.26 0.59 16 4 C -0.14 -1.22 9.02 -39.36 -0.36 -1.57 16 5 C -0.19 -1.77 9.02 -39.50 -0.36 -2.13 16 6 C 0.15 1.89 6.70 -38.61 -0.26 1.63 16 7 O -0.28 -3.75 8.56 -40.66 -0.35 -4.10 16 8 C 0.02 0.18 9.81 101.05 0.99 1.17 16 9 C -0.16 -2.20 5.88 -104.96 -0.62 -2.81 16 10 C 0.39 6.48 7.17 -30.86 -0.22 6.26 16 11 O -0.43 -8.03 14.53 -16.41 -0.24 -8.27 16 12 C 0.08 1.46 5.31 -5.20 -0.03 1.43 16 13 N -1.13 -24.07 5.93 -11.66 -0.07 -24.14 16 14 S 2.72 73.41 5.02 -107.50 -0.54 72.87 16 15 O -1.00 -30.25 18.02 -57.17 -1.03 -31.28 16 16 O -1.01 -29.42 17.49 -57.17 -1.00 -30.42 16 17 C -1.02 -28.04 9.72 30.60 0.30 -27.74 16 18 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 19 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 20 N -0.84 -24.95 13.19 55.43 0.73 -24.22 16 21 Si 0.92 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.07 -0.79 9.40 -38.95 -0.37 -1.16 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.26 7.65 -51.93 -0.40 -0.14 16 28 H 0.05 0.25 7.65 -51.93 -0.40 -0.14 16 29 H 0.13 0.79 6.27 -52.48 -0.33 0.46 16 30 H 0.14 0.90 6.29 -52.49 -0.33 0.57 16 31 H 0.05 0.34 7.65 -51.93 -0.40 -0.05 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 34 H 0.11 1.86 7.69 -51.93 -0.40 1.46 16 35 H 0.10 1.46 8.09 -51.93 -0.42 1.04 16 36 H 0.41 8.32 7.70 -34.47 -0.27 8.05 16 37 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.16 1.73 7.05 -52.49 -0.37 1.36 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -38.65 344.19 -6.91 -45.56 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.09 Total: 6.32 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -0.28 Total: -19.55 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.66 Total: -48.37 kcal Atomic # 8 Polarization: -74.69 SS G_CDS: -2.82 Total: -77.51 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.54 Total: 72.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.65 -6.91 -45.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.733 kcal (2) G-P(sol) polarization free energy of solvation -38.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds