Wall clock time and date at job start Tue Mar 31 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00511 * 2 1 4 4 O 1.20828 * 119.99916 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00219 * 179.97438 * 3 2 1 6 6 C 1.50700 * 109.47209 * 180.02562 * 5 3 2 7 7 C 1.38261 * 119.91706 * 270.02470 * 6 5 3 8 8 C 1.38280 * 120.17875 * 179.74702 * 7 6 5 9 9 C 1.38508 * 120.01803 * 0.50486 * 8 7 6 10 10 O 1.36009 * 120.08024 * 179.74527 * 9 8 7 11 11 C 1.42903 * 117.00330 * 359.72901 * 10 9 8 12 12 C 1.39316 * 119.83705 * 359.47352 * 9 8 7 13 13 N 1.39967 * 120.08762 * 180.29855 * 12 9 8 14 14 S 1.65601 * 120.00036 * 146.95791 * 13 12 9 15 15 O 1.42094 * 106.40257 * 181.21852 * 14 13 12 16 16 O 1.42100 * 106.40037 * 314.13562 * 14 13 12 17 17 C 1.76194 * 107.21903 * 67.67735 * 14 13 12 18 18 H 1.08007 * 119.99748 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00379 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99892 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00269 * 180.02562 * 19 17 14 22 22 H 1.48504 * 109.46886 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47328 * 119.99611 * 21 19 17 24 24 H 1.48506 * 109.46841 * 240.00032 * 21 19 17 25 25 C 1.38222 * 119.92235 * 90.00084 * 6 5 3 26 26 H 1.08998 * 109.46755 * 300.00377 * 1 2 3 27 27 H 1.08994 * 109.46574 * 60.00084 * 1 2 3 28 28 H 1.08992 * 109.47537 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47239 * 59.99733 * 5 3 2 30 30 H 1.09000 * 109.47211 * 299.99779 * 5 3 2 31 31 H 1.07998 * 119.91177 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.99328 * 180.27873 * 8 7 6 33 33 H 1.09000 * 109.46612 * 299.99784 * 11 10 9 34 34 H 1.08999 * 109.47212 * 59.99485 * 11 10 9 35 35 H 1.08994 * 109.47316 * 180.02562 * 11 10 9 36 36 H 0.97004 * 119.99813 * 326.96253 * 13 12 9 37 37 H 0.97000 * 120.00274 * 180.02562 * 20 19 17 38 38 H 1.07995 * 120.00804 * 0.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 3.9938 2.7198 0.0011 7 6 4.1893 3.3815 -1.1970 8 6 4.5764 4.7090 -1.2029 9 6 4.7796 5.3768 -0.0066 10 8 5.1653 6.6811 -0.0109 11 6 5.3485 7.2993 -1.2862 12 6 4.5823 4.7109 1.2011 13 7 4.7801 5.3825 2.4132 14 16 3.8519 5.0030 3.7311 15 8 4.2709 5.8664 4.7790 16 8 2.5095 4.9348 3.2702 17 6 4.2917 3.3702 4.2260 18 1 5.0474 2.8254 3.6794 19 6 3.6705 2.7875 5.3102 20 7 2.7500 3.4507 5.9754 21 14 4.1373 1.0566 5.8353 22 1 5.1910 0.5320 4.9299 23 1 4.6497 1.0833 7.2287 24 1 2.9418 0.1785 5.7640 25 6 4.1889 3.3807 1.1993 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.9565 0.7803 -0.8891 30 1 3.9558 0.7808 0.8908 31 1 4.0358 2.8612 -2.1309 32 1 4.7239 5.2243 -2.1406 33 1 6.1185 6.7643 -1.8420 34 1 4.4117 7.2691 -1.8425 35 1 5.6555 8.3358 -1.1468 36 1 5.4607 6.0703 2.4811 37 1 2.3132 3.0409 6.7384 38 1 4.0355 2.8614 2.1337 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:16 Heat of formation + Delta-G solvation = -183.746733 kcal Electronic energy + Delta-G solvation = -26773.406446 eV Core-core repulsion = 22708.237397 eV Total energy + Delta-G solvation = -4065.169049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41745 -39.80678 -37.53550 -36.19435 -35.29087 -34.58544 -34.02228 -33.17360 -31.91172 -29.02495 -28.47285 -27.41305 -26.26828 -25.99380 -22.30399 -21.89607 -20.36233 -18.98522 -18.08074 -17.55968 -17.41039 -16.81556 -16.46255 -16.20374 -16.10531 -15.63363 -15.34154 -14.93261 -14.20383 -14.08178 -13.98916 -13.77839 -13.46753 -13.31733 -13.08318 -12.54324 -12.15723 -12.07729 -11.98289 -11.80459 -11.53248 -11.33079 -11.28144 -10.95703 -10.87342 -10.62761 -10.62443 -10.56086 -10.34887 -10.22885 -10.20619 -10.07330 -9.30825 -8.85144 -8.24505 -7.40573 -6.76765 -5.40829 1.59112 1.70479 2.19039 2.48865 2.95345 3.01703 3.10460 3.16321 3.44526 3.99000 4.08192 4.52123 4.57879 4.80268 4.98682 5.08251 5.16137 5.19529 5.20361 5.26224 5.31406 5.35482 5.50199 5.54452 5.62815 5.68982 5.77238 5.89833 6.11400 6.26913 6.45228 6.51102 6.58201 6.80947 6.87052 7.07732 7.24255 7.56733 7.85983 7.90399 8.00709 8.79618 10.17191 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.008198 B = 0.007191 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.591231 B = 3892.591109 C = 6451.565786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.455 3.545 4 O -0.483 6.483 5 C -0.066 4.066 6 C -0.086 4.086 7 C -0.097 4.097 8 C -0.186 4.186 9 C 0.092 3.908 10 O -0.315 6.315 11 C 0.030 3.970 12 C 0.174 3.826 13 N -1.064 6.064 14 S 2.701 3.299 15 O -0.998 6.998 16 O -0.986 6.986 17 C -1.023 5.023 18 H 0.110 0.890 19 C 0.134 3.866 20 N -0.839 5.839 21 Si 0.918 3.082 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.119 4.119 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.415 0.585 37 H 0.292 0.708 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -4.881 -15.587 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.296 3.704 4 O -0.368 6.368 5 C -0.103 4.103 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.205 4.205 9 C 0.044 3.956 10 O -0.229 6.229 11 C -0.066 4.066 12 C 0.075 3.925 13 N -0.806 5.806 14 S 2.801 3.199 15 O -0.989 6.989 16 O -0.976 6.976 17 C -1.156 5.156 18 H 0.128 0.872 19 C -0.085 4.085 20 N -0.468 5.468 21 Si 0.742 3.258 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.140 4.140 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.461 -3.888 -14.825 15.522 hybrid contribution 0.563 -0.920 0.035 1.079 sum 3.024 -4.808 -14.790 15.843 Atomic orbital electron populations 1.23221 0.76665 1.03236 1.02732 1.86470 1.23240 1.33850 1.84751 1.23754 0.92055 0.81396 0.73190 1.90755 1.66821 1.36033 1.43216 1.20221 0.87835 0.95693 1.06557 1.18840 1.02746 0.94158 0.92941 1.20565 1.00223 0.93880 0.96981 1.20883 1.07506 0.95992 0.96125 1.18819 1.00078 0.83523 0.93181 1.86062 1.83413 1.22281 1.31100 1.22997 1.00827 0.98106 0.84650 1.16663 1.01450 0.90545 0.83815 1.54107 1.53119 1.49701 1.23639 1.01080 0.72411 0.76323 0.70068 1.93387 1.82848 1.69414 1.53231 1.93429 1.34824 1.88769 1.80605 1.30611 1.35305 1.24382 1.25323 0.87153 1.24752 0.91047 0.99903 0.92760 1.69902 1.20609 1.38543 1.17752 0.86155 0.79451 0.80951 0.79281 1.18230 1.19451 1.19458 1.21612 0.99707 0.91845 1.00818 0.91626 0.92146 0.88443 0.86940 0.86392 0.86114 0.85443 0.92930 0.92818 0.88566 0.75214 0.89742 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.15 10.56 -39.24 -0.41 -5.56 16 3 C 0.45 7.36 7.95 36.01 0.29 7.64 16 4 O -0.48 -9.80 15.78 -18.75 -0.30 -10.09 16 5 C -0.07 -0.88 5.94 -29.03 -0.17 -1.05 16 6 C -0.09 -1.42 4.37 -104.62 -0.46 -1.87 16 7 C -0.10 -1.39 9.69 -39.56 -0.38 -1.78 16 8 C -0.19 -2.72 9.04 -39.47 -0.36 -3.07 16 9 C 0.09 1.63 6.70 -39.08 -0.26 1.37 16 10 O -0.32 -5.07 10.03 -19.77 -0.20 -5.26 16 11 C 0.03 0.31 9.81 101.05 0.99 1.30 16 12 C 0.17 3.59 6.21 -83.56 -0.52 3.07 16 13 N -1.06 -23.43 5.67 32.51 0.18 -23.24 16 14 S 2.70 73.96 4.63 -107.50 -0.50 73.46 16 15 O -1.00 -29.80 18.02 -57.17 -1.03 -30.83 16 16 O -0.99 -30.10 17.44 -57.17 -1.00 -31.10 16 17 C -1.02 -27.43 7.59 30.60 0.23 -27.20 16 18 H 0.11 2.64 6.88 -52.48 -0.36 2.28 16 19 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 20 N -0.84 -24.40 13.19 55.43 0.73 -23.67 16 21 Si 0.92 19.85 29.54 -169.99 -5.02 14.83 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.12 -2.40 8.59 -39.41 -0.34 -2.74 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.12 1.45 8.08 -51.93 -0.42 1.03 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 33 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 34 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.41 8.02 8.65 -34.47 -0.30 7.72 16 37 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.17 3.63 4.47 -52.49 -0.23 3.39 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -38.56 344.83 -6.46 -45.02 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.11 Total: 10.53 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.01 Total: -19.29 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.92 Total: -46.91 kcal Atomic # 8 Polarization: -79.91 SS G_CDS: -2.94 Total: -82.84 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 73.96 SS G_CDS: -0.50 Total: 73.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -38.56 -6.46 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.729 kcal (2) G-P(sol) polarization free energy of solvation -38.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds