Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00374 * 2 1 4 4 O 1.20833 * 119.99795 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00551 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46567 * 304.99418 * 5 3 2 7 7 O 1.42901 * 109.47152 * 184.99725 * 5 3 2 8 8 C 1.52994 * 109.47273 * 64.99294 * 5 3 2 9 9 H 1.08999 * 109.47467 * 300.01014 * 8 5 3 10 10 N 1.46500 * 109.46903 * 60.00564 * 8 5 3 11 11 S 1.65606 * 120.00055 * 215.00161 * 10 8 5 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 8 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 8 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 8 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31506 * 120.00315 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 119.99549 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47295 * 90.00054 * 18 16 14 20 20 H 1.48505 * 109.47129 * 210.00207 * 18 16 14 21 21 H 1.48504 * 109.47322 * 330.00304 * 18 16 14 22 22 C 1.50701 * 109.47273 * 179.97438 * 8 5 3 23 23 C 1.38230 * 120.00319 * 279.73227 * 22 8 5 24 24 C 1.38233 * 119.99873 * 179.78779 * 23 22 8 25 25 C 1.38230 * 120.00289 * 0.43832 * 24 23 22 26 26 C 1.38234 * 119.99738 * 359.81339 * 25 24 23 27 27 C 1.38230 * 120.00264 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47221 * 300.00397 * 1 2 3 29 29 H 1.09002 * 109.46705 * 60.00612 * 1 2 3 30 30 H 1.09000 * 109.46851 * 179.97438 * 1 2 3 31 31 H 0.96697 * 113.99989 * 299.99800 * 7 5 3 32 32 H 0.97002 * 120.00335 * 35.00201 * 10 8 5 33 33 H 0.96999 * 119.99997 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.99773 * 359.97438 * 23 22 8 35 35 H 1.07999 * 119.99784 * 180.27450 * 24 23 22 36 36 H 1.08003 * 120.00379 * 179.83665 * 25 24 23 37 37 H 1.08007 * 120.00203 * 179.97438 * 26 25 24 38 38 H 1.08001 * 120.00413 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9597 0.7054 0.8427 7 8 3.9718 2.6401 0.1178 8 6 4.1082 0.6923 -1.3063 9 1 3.7989 -0.3490 -1.3958 10 7 3.5796 1.4577 -2.4381 11 16 3.2259 0.6912 -3.8629 12 8 4.3570 -0.1085 -4.1799 13 8 2.7081 1.6858 -4.7358 14 6 1.9018 -0.4254 -3.5398 15 1 1.4870 -0.4979 -2.5453 16 6 1.3951 -1.2067 -4.5567 17 7 0.4066 -2.0398 -4.3156 18 14 2.1121 -1.0808 -6.2770 19 1 3.2261 -2.0521 -6.4213 20 1 1.0569 -1.3856 -7.2765 21 1 2.6233 0.2954 -6.5008 22 6 5.6131 0.7718 -1.3060 23 6 6.2425 1.9614 -1.6216 24 6 7.6228 2.0353 -1.6170 25 6 8.3739 0.9175 -1.3056 26 6 7.7446 -0.2735 -0.9951 27 6 6.3642 -0.3464 -0.9953 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6566 3.2069 -0.5994 32 1 3.4367 2.4133 -2.3531 33 1 0.0504 -2.5897 -5.0309 34 1 5.6557 2.8337 -1.8689 35 1 8.1145 2.9659 -1.8593 36 1 9.4524 0.9746 -1.3046 37 1 8.3314 -1.1471 -0.7521 38 1 5.8724 -1.2767 -0.7523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = -181.764153 kcal Electronic energy + Delta-G solvation = -27616.687856 eV Core-core repulsion = 23551.604778 eV Total energy + Delta-G solvation = -4065.083078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65185 -39.26231 -37.44296 -36.07207 -35.68721 -34.50219 -34.39507 -33.08926 -30.94513 -30.47423 -29.37274 -27.00111 -26.43943 -24.21853 -22.39729 -21.17684 -20.77150 -19.38605 -18.18092 -17.59339 -17.43648 -17.06910 -16.72343 -16.36993 -15.95251 -15.33085 -15.08835 -14.74462 -14.41717 -14.18744 -13.86880 -13.57831 -13.25924 -13.22270 -13.01325 -12.92165 -12.61126 -12.49120 -12.08179 -11.84198 -11.65520 -11.42685 -11.22854 -11.05123 -10.86242 -10.70554 -10.67413 -10.55248 -10.51317 -10.15055 -9.92873 -9.43786 -9.26296 -8.85106 -8.67814 -8.51273 -6.86394 -5.40842 1.48436 1.63816 1.92783 2.29907 2.82127 3.03092 3.13643 3.22924 3.89830 3.92763 4.00088 4.20478 4.53830 4.66562 4.76410 5.00614 5.02212 5.13454 5.18853 5.26549 5.31994 5.39046 5.49770 5.56087 5.69725 5.74100 5.92277 5.95645 6.13491 6.20044 6.30362 6.56660 6.63560 6.68503 6.83397 7.18797 7.21427 7.39629 7.45527 7.86492 8.15404 8.64714 10.25334 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.006904 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.766587 B = 4054.394125 C = 5612.697219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.345 6.345 3 C 0.438 3.562 4 O -0.502 6.502 5 C 0.121 3.879 6 H 0.147 0.853 7 O -0.522 6.522 8 C 0.175 3.825 9 H 0.124 0.876 10 N -1.121 6.121 11 S 2.669 3.331 12 O -0.999 6.999 13 O -1.005 7.005 14 C -1.016 5.016 15 H 0.127 0.873 16 C 0.158 3.842 17 N -0.819 5.819 18 Si 0.799 3.201 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.222 1.222 22 C -0.085 4.085 23 C -0.085 4.085 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.100 4.100 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.382 0.618 32 H 0.403 0.597 33 H 0.281 0.719 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 3.306 9.885 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.261 6.261 3 C 0.280 3.720 4 O -0.389 6.389 5 C 0.058 3.942 6 H 0.165 0.835 7 O -0.328 6.328 8 C 0.066 3.934 9 H 0.141 0.859 10 N -0.875 5.875 11 S 2.771 3.229 12 O -0.988 6.988 13 O -0.995 6.995 14 C -1.151 5.151 15 H 0.145 0.855 16 C -0.062 4.062 17 N -0.448 5.448 18 Si 0.619 3.381 19 H -0.169 1.169 20 H -0.179 1.179 21 H -0.144 1.144 22 C -0.087 4.087 23 C -0.103 4.103 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.118 4.118 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.231 0.769 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.432 3.220 9.538 13.132 hybrid contribution -0.967 0.232 -0.927 1.359 sum 7.465 3.451 8.611 11.907 Atomic orbital electron populations 1.23299 0.75627 1.04191 1.02274 1.86499 1.24052 1.32384 1.83117 1.24502 0.92784 0.82267 0.72482 1.90658 1.66749 1.36454 1.45068 1.21831 0.86174 0.85871 1.00313 0.83527 1.86650 1.75760 1.17592 1.52760 1.20152 0.90152 0.97973 0.85108 0.85876 1.55858 1.81850 1.18946 1.30848 1.01651 0.75819 0.74647 0.70751 1.93442 1.53799 1.69787 1.81804 1.93489 1.81342 1.62187 1.62526 1.30420 1.37792 1.39638 1.07236 0.85537 1.24344 0.92054 0.91397 0.98437 1.69961 1.20954 1.19379 1.34507 0.87909 0.81706 0.83898 0.84621 1.16925 1.17915 1.14433 1.19926 0.94289 0.94327 1.00146 1.20851 0.94332 0.97200 0.97955 1.21068 0.93948 0.98511 1.00915 1.21093 0.99487 0.93319 1.00043 1.21045 0.94463 0.97749 1.00847 1.21028 0.94011 0.97766 0.99035 0.92532 0.91066 0.87795 0.76870 0.76510 0.90890 0.86382 0.86376 0.86524 0.86172 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.66 16 2 O -0.34 -5.67 10.03 -39.24 -0.39 -6.06 16 3 C 0.44 7.08 6.87 36.01 0.25 7.33 16 4 O -0.50 -9.08 16.07 -25.47 -0.41 -9.48 16 5 C 0.12 1.64 3.33 -27.89 -0.09 1.54 16 6 H 0.15 1.59 8.14 -51.93 -0.42 1.16 16 7 O -0.52 -6.76 11.66 -55.14 -0.64 -7.40 16 8 C 0.18 2.75 2.23 -69.09 -0.15 2.59 16 9 H 0.12 2.03 7.71 -51.93 -0.40 1.63 16 10 N -1.12 -20.11 4.32 -5.88 -0.03 -20.13 16 11 S 2.67 64.06 4.15 -107.50 -0.45 63.62 16 12 O -1.00 -25.61 16.59 -57.17 -0.95 -26.56 16 13 O -1.01 -26.49 16.02 -57.17 -0.92 -27.41 16 14 C -1.02 -26.83 10.12 30.60 0.31 -26.52 16 15 H 0.13 3.30 7.52 -52.49 -0.39 2.91 16 16 C 0.16 4.34 5.47 -17.82 -0.10 4.24 16 17 N -0.82 -22.48 13.96 55.43 0.77 -21.71 16 18 Si 0.80 20.15 26.54 -169.99 -4.51 15.64 16 19 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.22 -5.78 5.61 56.52 0.32 -5.46 16 22 C -0.09 -1.28 4.88 -104.62 -0.51 -1.79 16 23 C -0.09 -1.21 8.45 -39.59 -0.33 -1.55 16 24 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 25 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 26 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 27 C -0.10 -1.40 9.67 -39.58 -0.38 -1.78 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.38 4.38 7.23 45.56 0.33 4.71 16 32 H 0.40 6.14 7.13 -34.47 -0.25 5.90 16 33 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.12 1.51 7.30 -52.49 -0.38 1.13 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.13 1.55 8.04 -52.49 -0.42 1.12 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -34.35 340.85 -7.22 -41.57 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -3.70 Total: 12.89 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.14 Total: -20.10 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.75 Total: -41.84 kcal Atomic # 8 Polarization: -73.61 SS G_CDS: -3.31 Total: -76.92 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.51 Total: 15.64 kcal Atomic # 16 Polarization: 64.06 SS G_CDS: -0.45 Total: 63.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.35 -7.22 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.195 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds