Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00035 * 2 1 4 4 O 1.20824 * 120.00000 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00195 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46907 * 59.99699 * 5 3 2 7 7 C 1.53002 * 109.47021 * 300.00041 * 5 3 2 8 8 C 1.50697 * 109.46967 * 175.00048 * 7 5 3 9 9 C 1.38270 * 119.94421 * 270.25509 * 8 7 5 10 10 C 1.38138 * 120.05794 * 180.26220 * 9 8 7 11 11 C 1.38736 * 119.94337 * 359.46080 * 10 9 8 12 12 O 1.35893 * 120.05957 * 180.30421 * 11 10 9 13 13 C 1.38740 * 119.88595 * 0.28279 * 11 10 9 14 14 C 1.38146 * 119.94197 * 359.97438 * 13 11 10 15 15 N 1.46501 * 109.47054 * 180.02562 * 5 3 2 16 16 S 1.65609 * 119.99385 * 264.99702 * 15 5 3 17 17 O 1.42108 * 106.39668 * 178.54144 * 16 15 5 18 18 O 1.42099 * 106.40421 * 311.46134 * 16 15 5 19 19 C 1.76195 * 107.21643 * 65.00546 * 16 15 5 20 20 H 1.08001 * 120.00416 * 359.97438 * 19 16 15 21 21 C 1.37880 * 119.99919 * 179.97438 * 19 16 15 22 22 N 1.31521 * 119.99989 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 120.00377 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47060 * 89.99619 * 23 21 19 25 25 H 1.48499 * 109.46921 * 210.00130 * 23 21 19 26 26 H 1.48499 * 109.46511 * 329.99991 * 23 21 19 27 27 H 1.09003 * 109.47147 * 59.99428 * 1 2 3 28 28 H 1.08999 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46934 * 299.99930 * 1 2 3 30 30 H 1.08999 * 109.46732 * 54.99828 * 7 5 3 31 31 H 1.09002 * 109.47090 * 295.00145 * 7 5 3 32 32 H 1.08004 * 119.97397 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.03311 * 179.74549 * 10 9 8 34 34 H 0.96702 * 114.00269 * 89.99703 * 12 11 10 35 35 H 1.07993 * 120.02463 * 180.02562 * 13 11 10 36 36 H 1.08006 * 119.96944 * 179.97438 * 14 13 11 37 37 H 0.96996 * 120.00208 * 85.00127 * 15 5 3 38 38 H 0.96995 * 120.00396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1139 0.5811 1.2483 8 6 5.6193 0.5518 1.1873 9 6 6.2652 -0.5138 0.5879 10 6 7.6452 -0.5457 0.5355 11 6 8.3830 0.4980 1.0751 12 8 9.7405 0.4720 1.0193 13 6 7.7324 1.5686 1.6713 14 6 6.3523 1.5931 1.7258 15 7 3.9817 2.6798 0.0002 16 16 4.3357 3.4392 -1.4283 17 8 4.6662 4.7813 -1.0980 18 8 5.2134 2.5742 -2.1359 19 6 2.8449 3.5101 -2.3648 20 1 1.9335 3.0941 -1.9614 21 6 2.8418 4.0966 -3.6126 22 7 3.9516 4.6036 -4.1036 23 14 1.2615 4.1711 -4.6058 24 1 0.5354 5.4267 -4.2873 25 1 1.5856 4.1406 -6.0547 26 1 0.4073 3.0052 -4.2649 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.7321 -0.4388 1.2941 31 1 3.7968 1.1280 2.1363 32 1 5.6903 -1.3237 0.1636 33 1 8.1493 -1.3801 0.0708 34 1 10.1096 0.8833 0.2257 35 1 8.3045 2.3824 2.0917 36 1 5.8454 2.4261 2.1903 37 1 4.0493 3.1651 0.8372 38 1 3.9495 5.0159 -4.9816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = -193.953664 kcal Electronic energy + Delta-G solvation = -26816.345229 eV Core-core repulsion = 22750.733575 eV Total energy + Delta-G solvation = -4065.611655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.34012 -39.60241 -37.27504 -36.31667 -35.30312 -34.87848 -33.98752 -33.04810 -31.20043 -30.86507 -28.66093 -26.98840 -26.08327 -24.22221 -22.73402 -21.32054 -20.58272 -19.09372 -18.33894 -17.84888 -17.12707 -16.87777 -16.44358 -15.89062 -15.70141 -15.63516 -15.24251 -14.96357 -14.74528 -13.98872 -13.79167 -13.52406 -13.42869 -13.37380 -13.13372 -12.68940 -12.27917 -12.02075 -11.90577 -11.78541 -11.45024 -11.36138 -11.19933 -11.10667 -10.62852 -10.50874 -10.47035 -10.41004 -10.35191 -10.29503 -10.21600 -9.21579 -9.20285 -8.86577 -8.63807 -8.35424 -6.67611 -5.27008 1.28297 1.47461 2.22741 2.51662 2.91072 3.08867 3.15208 3.22644 3.68247 4.08288 4.32726 4.49873 4.67425 4.76516 4.88111 4.99476 5.06804 5.17396 5.22130 5.25988 5.31012 5.45731 5.51031 5.62910 5.68894 5.78733 5.83877 5.96788 6.09670 6.31005 6.37012 6.51264 6.58719 6.65361 6.69614 6.89589 7.38181 7.69176 7.70247 8.00881 8.16556 8.95121 10.26853 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.005219 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.651032 B = 5363.524080 C = 6903.665357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.437 3.563 4 O -0.476 6.476 5 C 0.180 3.820 6 H 0.132 0.868 7 C -0.078 4.078 8 C -0.085 4.085 9 C -0.093 4.093 10 C -0.142 4.142 11 C 0.100 3.900 12 O -0.505 6.505 13 C -0.144 4.144 14 C -0.091 4.091 15 N -1.108 6.108 16 S 2.709 3.291 17 O -1.001 7.001 18 O -1.000 7.000 19 C -1.018 5.018 20 H 0.112 0.888 21 C 0.134 3.866 22 N -0.849 5.849 23 Si 0.920 3.080 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.264 1.264 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.391 0.609 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.407 0.593 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -11.635 10.008 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.276 3.724 4 O -0.360 6.360 5 C 0.068 3.932 6 H 0.150 0.850 7 C -0.117 4.117 8 C -0.085 4.085 9 C -0.111 4.111 10 C -0.160 4.160 11 C 0.055 3.945 12 O -0.315 6.315 13 C -0.162 4.162 14 C -0.110 4.110 15 N -0.860 5.860 16 S 2.809 3.191 17 O -0.992 6.992 18 O -0.990 6.990 19 C -1.151 5.151 20 H 0.130 0.870 21 C -0.084 4.084 22 N -0.479 5.479 23 Si 0.744 3.256 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.188 1.188 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.238 0.762 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.011 -11.294 10.006 15.123 hybrid contribution -1.639 0.650 -0.869 1.966 sum -0.628 -10.645 9.137 14.042 Atomic orbital electron populations 1.23212 0.77013 1.03171 1.02571 1.86486 1.22956 1.33878 1.84625 1.24724 0.92887 0.81599 0.73212 1.90695 1.66455 1.36056 1.42776 1.20094 0.85598 0.85120 1.02386 0.85023 1.20825 0.91847 1.02248 0.96749 1.19638 0.94738 0.94963 0.99139 1.20931 0.93820 0.98235 0.98074 1.21348 0.94257 0.99468 1.00973 1.18470 0.82686 0.94315 0.98981 1.84761 1.16879 1.82540 1.47320 1.21396 0.94868 0.98145 1.01813 1.20951 0.93254 0.97721 0.99035 1.56062 1.84745 1.18113 1.27064 1.00675 0.75789 0.71923 0.70680 1.93381 1.85856 1.36337 1.83585 1.93373 1.66668 1.68138 1.70844 1.30677 1.18015 1.52013 1.14444 0.86982 1.24734 0.97928 0.89681 0.96008 1.69901 1.27358 1.31482 1.19130 0.86175 0.81601 0.79631 0.78192 1.19187 1.20047 1.18821 0.91833 0.88467 0.92190 0.88378 0.89758 0.85229 0.85508 0.75309 0.85473 0.85549 0.76155 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.14 10.37 -39.26 -0.41 -5.54 16 3 C 0.44 7.45 7.16 36.01 0.26 7.71 16 4 O -0.48 -9.62 14.16 -18.75 -0.27 -9.89 16 5 C 0.18 2.94 2.80 -69.08 -0.19 2.75 16 6 H 0.13 2.25 7.50 -51.93 -0.39 1.86 16 7 C -0.08 -0.93 4.91 -27.88 -0.14 -1.07 16 8 C -0.08 -1.12 4.95 -104.60 -0.52 -1.64 16 9 C -0.09 -1.18 9.69 -39.61 -0.38 -1.56 16 10 C -0.14 -1.83 9.99 -39.43 -0.39 -2.23 16 11 C 0.10 1.35 6.71 -39.21 -0.26 1.09 16 12 O -0.50 -6.08 13.50 -19.40 -0.26 -6.34 16 13 C -0.14 -1.96 9.99 -39.43 -0.39 -2.35 16 14 C -0.09 -1.24 9.30 -39.61 -0.37 -1.61 16 15 N -1.11 -21.46 4.34 -5.88 -0.03 -21.49 16 16 S 2.71 71.40 5.00 -107.50 -0.54 70.86 16 17 O -1.00 -29.44 18.02 -57.17 -1.03 -30.47 16 18 O -1.00 -28.21 17.36 -57.17 -0.99 -29.20 16 19 C -1.02 -28.60 9.65 30.60 0.30 -28.30 16 20 H 0.11 3.02 5.56 -52.49 -0.29 2.73 16 21 C 0.13 3.81 5.46 -17.82 -0.10 3.71 16 22 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 23 Si 0.92 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.39 3.13 9.06 45.56 0.41 3.54 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 1.49 7.93 -52.48 -0.42 1.08 16 37 H 0.41 6.78 8.71 -34.48 -0.30 6.48 16 38 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -38.67 349.64 -7.16 -45.83 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.49 Total: 11.21 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.13 Total: -22.04 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.71 Total: -45.91 kcal Atomic # 8 Polarization: -78.49 SS G_CDS: -2.96 Total: -81.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 71.40 SS G_CDS: -0.54 Total: 70.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -38.67 -7.16 -45.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.124 kcal (2) G-P(sol) polarization free energy of solvation -38.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds