Wall clock time and date at job start Tue Mar 31 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99828 * 2 1 4 4 O 1.20820 * 120.00331 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00068 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.46761 * 299.99720 * 5 3 2 7 7 N 1.46498 * 109.47462 * 179.97438 * 5 3 2 8 8 S 1.65602 * 119.99612 * 94.72016 * 7 5 3 9 9 O 1.42104 * 106.40175 * 178.81816 * 8 7 5 10 10 O 1.42095 * 106.40656 * 311.73868 * 8 7 5 11 11 C 1.76203 * 107.21635 * 65.28001 * 8 7 5 12 12 H 1.07994 * 119.99889 * 0.02562 * 11 8 7 13 13 C 1.37877 * 119.99706 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99786 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00282 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47370 * 89.99815 * 15 13 11 17 17 H 1.48501 * 109.46920 * 209.99965 * 15 13 11 18 18 H 1.48503 * 109.47075 * 329.99362 * 15 13 11 19 19 C 1.50696 * 109.47191 * 59.99766 * 5 3 2 20 20 C 1.38290 * 119.97037 * 79.72780 * 19 5 3 21 21 C 1.38249 * 120.11014 * 179.72458 * 20 19 5 22 22 C 1.38173 * 120.05551 * 0.55074 * 21 20 19 23 23 C 1.38705 * 119.93940 * 359.72467 * 22 21 20 24 24 O 1.35905 * 120.05352 * 179.97438 * 23 22 21 25 25 C 1.42901 * 116.99769 * 0.02562 * 24 23 22 26 26 C 1.38118 * 119.97541 * 260.00278 * 19 5 3 27 27 H 1.09003 * 109.46754 * 60.00146 * 1 2 3 28 28 H 1.09001 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46924 * 299.99906 * 1 2 3 30 30 H 0.97001 * 120.00384 * 275.00494 * 7 5 3 31 31 H 0.96999 * 120.00275 * 180.02562 * 14 13 11 32 32 H 1.07995 * 119.94561 * 359.97438 * 20 19 5 33 33 H 1.07998 * 119.97364 * 180.25390 * 21 20 19 34 34 H 1.07992 * 120.02841 * 179.70282 * 22 21 20 35 35 H 1.09006 * 109.46973 * 300.00078 * 25 24 23 36 36 H 1.08996 * 109.47183 * 60.00392 * 25 24 23 37 37 H 1.09002 * 109.47310 * 180.02562 * 25 24 23 38 38 H 1.08007 * 120.02871 * 0.02562 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8892 7 7 3.9817 2.6798 -0.0011 8 16 4.3302 3.4406 1.4280 9 8 4.7222 4.7647 1.0924 10 8 3.2557 3.1483 2.3107 11 6 5.7561 2.6555 2.1026 12 1 6.2218 1.8362 1.5752 13 6 6.2779 3.0878 3.3034 14 7 7.3424 2.5022 3.8067 15 14 5.4728 4.5055 4.2153 16 1 4.4384 3.9757 5.1397 17 1 6.5016 5.2416 4.9931 18 1 4.8385 5.4262 3.2379 19 6 4.1047 0.5920 -1.2313 20 6 4.0985 1.2524 -2.4463 21 6 4.5969 0.6308 -3.5761 22 6 5.0922 -0.6566 -3.4961 23 6 5.0942 -1.3232 -2.2797 24 8 5.5803 -2.5897 -2.1984 25 6 6.0742 -3.1737 -3.4055 26 6 4.5987 -0.6950 -1.1461 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0487 3.1655 -0.8380 31 1 7.7093 2.8061 4.6516 32 1 3.7074 2.2569 -2.5120 33 1 4.5948 1.1501 -4.5231 34 1 5.4770 -1.1436 -4.3799 35 1 5.2733 -3.2142 -4.1438 36 1 6.8947 -2.5694 -3.7923 37 1 6.4310 -4.1833 -3.2013 38 1 4.5989 -1.2122 -0.1979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:47 Heat of formation + Delta-G solvation = -163.154075 kcal Electronic energy + Delta-G solvation = -26644.062784 eV Core-core repulsion = 22579.786699 eV Total energy + Delta-G solvation = -4064.276084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61542 -39.91155 -37.85492 -36.37367 -35.63694 -34.68478 -34.44898 -33.05538 -31.26174 -30.03282 -28.28899 -27.42845 -26.46066 -25.90374 -22.73770 -21.99312 -20.57839 -19.29762 -18.32065 -17.59169 -17.34647 -16.82988 -16.60860 -16.33322 -16.02779 -15.82673 -15.81794 -15.31055 -14.89497 -14.16433 -13.90704 -13.69550 -13.44387 -13.34609 -13.24907 -12.86812 -12.72648 -12.61423 -12.05963 -11.93312 -11.75666 -11.52974 -11.37202 -11.21506 -10.94170 -10.82169 -10.64281 -10.60581 -10.56119 -10.49588 -9.88612 -9.47034 -9.22315 -8.91910 -8.77705 -8.24805 -6.82187 -5.38059 1.17172 1.41657 1.91148 2.44785 2.87530 3.07781 3.17300 3.18459 3.28062 3.68695 3.95165 4.21383 4.51203 4.58702 4.70117 4.92522 4.96047 4.98191 5.02359 5.14011 5.20541 5.21814 5.29082 5.29915 5.31585 5.48597 5.58840 5.61277 5.82911 5.99043 6.20863 6.28089 6.35335 6.51379 6.56684 6.63936 7.31820 7.42746 7.50492 7.98858 8.17808 8.67914 10.29537 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.004766 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.464924 B = 5873.544551 C = 6955.034837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.453 3.547 4 O -0.484 6.484 5 C 0.217 3.783 6 H 0.142 0.858 7 N -1.096 6.096 8 S 2.670 3.330 9 O -1.000 7.000 10 O -1.001 7.001 11 C -1.017 5.017 12 H 0.125 0.875 13 C 0.155 3.845 14 N -0.819 5.819 15 Si 0.800 3.200 16 H -0.245 1.245 17 H -0.254 1.254 18 H -0.220 1.220 19 C -0.045 4.045 20 C -0.141 4.141 21 C -0.079 4.079 22 C -0.204 4.204 23 C 0.127 3.873 24 O -0.315 6.315 25 C 0.028 3.972 26 C -0.121 4.121 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.412 0.588 31 H 0.281 0.719 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 -10.823 -14.565 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.291 3.709 4 O -0.369 6.369 5 C 0.106 3.894 6 H 0.159 0.841 7 N -0.850 5.850 8 S 2.772 3.228 9 O -0.990 6.990 10 O -0.990 6.990 11 C -1.152 5.152 12 H 0.143 0.857 13 C -0.065 4.065 14 N -0.448 5.448 15 Si 0.620 3.380 16 H -0.169 1.169 17 H -0.178 1.178 18 H -0.142 1.142 19 C -0.047 4.047 20 C -0.159 4.159 21 C -0.097 4.097 22 C -0.223 4.223 23 C 0.082 3.918 24 O -0.228 6.228 25 C -0.067 4.067 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.245 0.755 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.345 -10.032 -13.738 18.156 hybrid contribution 0.250 0.394 -0.132 0.485 sum -6.095 -9.638 -13.870 17.956 Atomic orbital electron populations 1.23236 0.76817 1.03346 1.02511 1.86512 1.23034 1.33302 1.84294 1.24258 0.92211 0.81698 0.72703 1.90647 1.66299 1.36311 1.43652 1.18853 0.86518 0.84315 0.99723 0.84089 1.55654 1.84025 1.18214 1.27065 1.01685 0.76097 0.73425 0.71578 1.93486 1.84697 1.37562 1.83279 1.93436 1.57407 1.85348 1.62843 1.30414 1.33184 1.33870 1.17702 0.85685 1.24387 0.92688 0.94554 0.94844 1.69981 1.18491 1.37883 1.18412 0.87886 0.81940 0.83722 0.84496 1.16877 1.17804 1.14237 1.19277 0.98301 0.93564 0.93583 1.20890 1.02425 1.00598 0.92021 1.20842 0.96582 0.93979 0.98295 1.21240 1.07090 0.97074 0.96892 1.18875 0.94787 0.84263 0.93841 1.86094 1.75759 1.26187 1.34788 1.23042 0.98540 0.98786 0.86340 1.20259 1.01430 0.94197 0.98113 0.92212 0.88293 0.91735 0.75453 0.90811 0.85573 0.85497 0.85470 0.92789 0.92636 0.88308 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.47 10.48 -39.25 -0.41 -5.88 16 3 C 0.45 8.21 7.30 36.01 0.26 8.47 16 4 O -0.48 -9.98 16.18 -18.75 -0.30 -10.28 16 5 C 0.22 3.86 2.87 -70.23 -0.20 3.66 16 6 H 0.14 2.49 7.73 -51.93 -0.40 2.09 16 7 N -1.10 -21.70 4.91 -6.88 -0.03 -21.74 16 8 S 2.67 67.58 4.15 -107.50 -0.45 67.13 16 9 O -1.00 -27.20 16.02 -57.17 -0.92 -28.11 16 10 O -1.00 -27.23 16.59 -57.17 -0.95 -28.17 16 11 C -1.02 -27.88 10.13 30.60 0.31 -27.57 16 12 H 0.13 3.39 8.06 -52.49 -0.42 2.97 16 13 C 0.16 4.42 5.47 -17.82 -0.10 4.32 16 14 N -0.82 -23.32 13.96 55.43 0.77 -22.54 16 15 Si 0.80 20.60 26.54 -169.99 -4.51 16.09 16 16 H -0.25 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.25 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.22 -5.83 5.61 56.52 0.32 -5.52 16 19 C -0.05 -0.68 4.87 -104.65 -0.51 -1.19 16 20 C -0.14 -1.87 9.14 -39.56 -0.36 -2.24 16 21 C -0.08 -0.88 10.04 -39.60 -0.40 -1.28 16 22 C -0.20 -2.26 9.04 -39.43 -0.36 -2.61 16 23 C 0.13 1.65 6.69 -39.22 -0.26 1.38 16 24 O -0.31 -3.79 10.50 -19.44 -0.20 -3.99 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 C -0.12 -1.73 9.61 -39.43 -0.38 -2.10 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 30 H 0.41 7.02 7.09 -34.47 -0.24 6.77 16 31 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.13 1.56 6.83 -52.49 -0.36 1.20 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 35 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 36 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.14 1.90 8.04 -52.48 -0.42 1.48 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -35.74 342.96 -6.07 -41.82 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.31 Total: 7.00 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 0.06 Total: -16.48 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.74 Total: -44.28 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: -2.78 Total: -76.44 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.51 Total: 16.09 kcal Atomic # 16 Polarization: 67.58 SS G_CDS: -0.45 Total: 67.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.74 -6.07 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.338 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds