Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.46602 * 60.00278 * 5 3 2 7 7 N 1.46502 * 109.47168 * 179.97438 * 5 3 2 8 8 S 1.65599 * 120.00115 * 265.00044 * 7 5 3 9 9 O 1.42090 * 106.40362 * 178.54303 * 8 7 5 10 10 O 1.42105 * 106.40367 * 311.46805 * 8 7 5 11 11 C 1.76205 * 107.21535 * 65.00416 * 8 7 5 12 12 H 1.07998 * 119.99857 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99870 * 179.97438 * 11 8 7 14 14 N 1.31510 * 119.99768 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99829 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47020 * 90.00437 * 15 13 11 17 17 H 1.48507 * 109.46622 * 209.99910 * 15 13 11 18 18 H 1.48502 * 109.47114 * 329.99670 * 15 13 11 19 19 C 1.50692 * 109.47099 * 300.00642 * 5 3 2 20 20 C 1.38289 * 119.97176 * 279.99190 * 19 5 3 21 21 C 1.38247 * 120.11657 * 180.02562 * 20 19 5 22 22 C 1.38166 * 120.05102 * 359.95721 * 21 20 19 23 23 C 1.38708 * 119.94605 * 0.02562 * 22 21 20 24 24 O 1.35904 * 120.05870 * 180.02562 * 23 22 21 25 25 C 1.42904 * 116.99634 * 359.97438 * 24 23 22 26 26 C 1.38122 * 119.97557 * 99.72233 * 19 5 3 27 27 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 28 28 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 30 30 H 0.96998 * 119.99525 * 85.00813 * 7 5 3 31 31 H 0.97000 * 120.00135 * 180.02562 * 14 13 11 32 32 H 1.08009 * 119.94167 * 359.97438 * 20 19 5 33 33 H 1.07992 * 119.97511 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.02582 * 180.02562 * 22 21 20 35 35 H 1.08991 * 109.47068 * 300.00268 * 25 24 23 36 36 H 1.09000 * 109.46979 * 59.99904 * 25 24 23 37 37 H 1.08996 * 109.46978 * 179.97438 * 25 24 23 38 38 H 1.08002 * 120.02647 * 359.97438 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9564 0.7807 -0.8893 7 7 3.9816 2.6799 -0.0002 8 16 4.3368 3.4376 -1.4291 9 8 4.6671 4.7799 -1.1003 10 8 5.2150 2.5717 -2.1351 11 6 2.8467 3.5072 -2.3669 12 1 1.9350 3.0916 -1.9638 13 6 2.8446 4.0923 -3.6155 14 7 3.9549 4.5979 -4.1065 15 14 1.2650 4.1655 -4.6099 16 1 0.5386 5.4215 -4.2935 17 1 1.5903 4.1333 -6.0586 18 1 0.4106 2.9999 -4.2684 19 6 4.1047 0.5920 1.2313 20 6 4.1038 1.2544 2.4452 21 6 4.5975 0.6309 3.5760 22 6 5.0923 -0.6566 3.4959 23 6 5.0940 -1.3234 2.2796 24 8 5.5797 -2.5900 2.1983 25 6 6.0737 -3.1741 3.4054 26 6 4.5935 -0.6971 1.1471 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 4.0486 3.1662 0.8364 31 1 3.9534 5.0099 -4.9847 32 1 3.7175 2.2610 2.5098 33 1 4.5961 1.1505 4.5227 34 1 5.4775 -1.1435 4.3797 35 1 6.8943 -2.5699 3.7920 36 1 5.2728 -3.2142 4.1438 37 1 6.4300 -4.1837 3.2012 38 1 4.5896 -1.2158 0.1997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -176.833470 kcal Electronic energy + Delta-G solvation = -26648.997499 eV Core-core repulsion = 22584.128231 eV Total energy + Delta-G solvation = -4064.869268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.58415 -39.89643 -37.85235 -36.29259 -35.28736 -34.56909 -33.99789 -33.02903 -31.23886 -30.00263 -28.23525 -27.44772 -26.08789 -25.83097 -22.74137 -21.97130 -20.50799 -19.11921 -18.23858 -17.74993 -17.01478 -16.75443 -16.45414 -16.27408 -15.92646 -15.85741 -15.74400 -15.18014 -14.69444 -14.11196 -13.97599 -13.69549 -13.42115 -13.40674 -13.21252 -12.72523 -12.63226 -12.01412 -11.99901 -11.87478 -11.69340 -11.30577 -11.18087 -11.13198 -10.92671 -10.60112 -10.54773 -10.50897 -10.42748 -10.32244 -10.23873 -9.28254 -9.19918 -8.87398 -8.64070 -8.27205 -6.66068 -5.25916 1.15969 1.39382 2.18888 2.52262 2.92747 3.11088 3.14483 3.17338 3.24977 3.69013 4.11061 4.48383 4.63969 4.68094 4.71529 4.90736 4.93753 4.96504 5.08309 5.17398 5.24533 5.26154 5.27514 5.35459 5.47339 5.59429 5.66083 5.75108 5.90345 6.18453 6.22657 6.33835 6.48762 6.60383 6.62438 6.69073 7.28655 7.39801 7.67097 8.01936 8.17654 8.96447 10.28557 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.004233 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.138986 B = 6613.274615 C = 7359.970703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.445 3.555 4 O -0.473 6.473 5 C 0.215 3.785 6 H 0.141 0.859 7 N -1.107 6.107 8 S 2.707 3.293 9 O -0.997 6.997 10 O -1.001 7.001 11 C -1.017 5.017 12 H 0.113 0.887 13 C 0.135 3.865 14 N -0.848 5.848 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.044 4.044 20 C -0.141 4.141 21 C -0.079 4.079 22 C -0.205 4.205 23 C 0.126 3.874 24 O -0.316 6.316 25 C 0.028 3.972 26 C -0.123 4.123 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.409 0.591 31 H 0.290 0.710 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 -14.278 14.651 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.283 3.717 4 O -0.358 6.358 5 C 0.104 3.896 6 H 0.159 0.841 7 N -0.859 5.859 8 S 2.808 3.192 9 O -0.988 6.988 10 O -0.991 6.991 11 C -1.151 5.151 12 H 0.131 0.869 13 C -0.083 4.083 14 N -0.478 5.478 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.188 1.188 19 C -0.046 4.046 20 C -0.160 4.160 21 C -0.097 4.097 22 C -0.224 4.224 23 C 0.081 3.919 24 O -0.229 6.229 25 C -0.067 4.067 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.970 -13.771 13.939 19.619 hybrid contribution -1.641 0.339 0.040 1.676 sum -2.611 -13.433 13.979 19.562 Atomic orbital electron populations 1.23224 0.76927 1.03228 1.02554 1.86504 1.22941 1.33482 1.84414 1.24364 0.92359 0.81764 0.73219 1.90694 1.66186 1.36001 1.42878 1.18846 0.86424 0.84856 0.99509 0.84137 1.56165 1.84813 1.17470 1.27462 1.00763 0.75898 0.71976 0.70594 1.93385 1.85841 1.36054 1.83499 1.93377 1.66744 1.68143 1.70818 1.30648 1.17873 1.52209 1.14368 0.86866 1.24729 0.97958 0.89653 0.95974 1.69899 1.27321 1.31402 1.19142 0.86163 0.81545 0.79643 0.78178 1.19190 1.20036 1.18775 1.19334 0.98011 0.93462 0.93751 1.20938 1.02319 1.00725 0.91992 1.20854 0.96598 0.93974 0.98304 1.21236 1.07206 0.97109 0.96859 1.18883 0.94914 0.84236 0.93883 1.86088 1.75820 1.26208 1.34779 1.23036 0.98549 0.98742 0.86373 1.20264 1.01615 0.94247 0.98090 0.92211 0.88427 0.91738 0.75866 0.89943 0.85424 0.85496 0.85493 0.92678 0.92764 0.88323 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.59 10.48 -39.25 -0.41 -6.00 16 3 C 0.44 8.15 7.14 36.01 0.26 8.40 16 4 O -0.47 -9.90 14.16 -18.75 -0.27 -10.16 16 5 C 0.22 3.88 3.01 -70.23 -0.21 3.67 16 6 H 0.14 2.53 7.36 -51.92 -0.38 2.15 16 7 N -1.11 -22.62 4.91 -6.88 -0.03 -22.65 16 8 S 2.71 72.67 5.00 -107.50 -0.54 72.13 16 9 O -1.00 -29.57 18.02 -57.17 -1.03 -30.60 16 10 O -1.00 -28.83 17.36 -57.17 -0.99 -29.82 16 11 C -1.02 -28.75 9.65 30.60 0.30 -28.45 16 12 H 0.11 3.06 5.56 -52.49 -0.29 2.77 16 13 C 0.13 3.83 5.46 -17.82 -0.10 3.73 16 14 N -0.85 -25.19 13.19 55.43 0.73 -24.46 16 15 Si 0.92 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.04 -0.66 4.88 -104.65 -0.51 -1.17 16 20 C -0.14 -1.88 9.15 -39.56 -0.36 -2.25 16 21 C -0.08 -0.88 10.04 -39.60 -0.40 -1.27 16 22 C -0.21 -2.21 9.04 -39.43 -0.36 -2.56 16 23 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 24 O -0.32 -3.62 10.50 -19.44 -0.20 -3.82 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 C -0.12 -1.72 9.61 -39.43 -0.38 -2.10 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 30 H 0.41 7.25 7.08 -34.47 -0.24 7.01 16 31 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.13 1.61 6.82 -52.48 -0.36 1.25 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 35 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 36 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.14 1.83 8.04 -52.49 -0.42 1.41 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -37.67 344.91 -6.60 -44.27 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.07 Total: 7.61 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 0.03 Total: -17.99 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.70 Total: -47.11 kcal Atomic # 8 Polarization: -77.50 SS G_CDS: -2.90 Total: -80.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.54 Total: 72.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.67 -6.60 -44.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.559 kcal (2) G-P(sol) polarization free energy of solvation -37.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds