Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47533 * 59.99910 * 5 3 2 7 7 C 1.53000 * 109.47220 * 299.99522 * 5 3 2 8 8 C 1.50697 * 109.47085 * 175.00451 * 7 5 3 9 9 C 1.38292 * 119.97592 * 90.00067 * 8 7 5 10 10 C 1.38239 * 120.11103 * 179.97438 * 9 8 7 11 11 C 1.38165 * 120.05649 * 0.02562 * 10 9 8 12 12 C 1.38708 * 119.94670 * 0.02562 * 11 10 9 13 13 O 1.35901 * 120.05915 * 180.02562 * 12 11 10 14 14 C 1.38124 * 119.97084 * 269.72013 * 8 7 5 15 15 N 1.46504 * 109.46911 * 179.97438 * 5 3 2 16 16 S 1.65600 * 119.99773 * 264.99676 * 15 5 3 17 17 O 1.42102 * 106.40171 * 178.54256 * 16 15 5 18 18 O 1.42100 * 106.40618 * 311.46133 * 16 15 5 19 19 C 1.76203 * 107.21876 * 65.00392 * 16 15 5 20 20 H 1.08002 * 119.99708 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99854 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00419 * 359.97438 * 21 19 16 23 23 Si 1.86807 * 119.99853 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47005 * 119.99771 * 23 21 19 26 26 H 1.48497 * 109.47245 * 240.00320 * 23 21 19 27 27 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 28 28 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 30 30 H 1.09005 * 109.46886 * 294.99894 * 7 5 3 31 31 H 1.08994 * 109.46869 * 54.99860 * 7 5 3 32 32 H 1.07998 * 119.94188 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.97085 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.02274 * 180.02562 * 11 10 9 35 35 H 0.96704 * 114.00073 * 89.99785 * 13 12 11 36 36 H 1.07999 * 120.02442 * 0.02562 * 14 8 7 37 37 H 0.96997 * 120.00124 * 85.00149 * 15 5 3 38 38 H 0.96997 * 120.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8908 7 6 4.1139 0.5811 1.2483 8 6 5.6193 0.5518 1.1874 9 6 6.3530 1.5929 1.7262 10 6 7.7342 1.5686 1.6723 11 6 8.3850 0.5039 1.0793 12 6 7.6514 -0.5411 0.5372 13 8 8.2892 -1.5898 -0.0462 14 6 6.2654 -0.5177 0.5986 15 7 3.9817 2.6797 -0.0011 16 16 4.3358 3.4379 -1.4301 17 8 4.6664 4.7802 -1.1010 18 8 5.2135 2.5723 -2.1369 19 6 2.8451 3.5080 -2.3668 20 1 1.9337 3.0923 -1.9631 21 6 2.8421 4.0935 -3.6151 22 7 3.9519 4.6001 -4.1064 23 14 1.2618 4.1671 -4.6084 24 1 0.1628 3.5314 -3.8381 25 1 0.9171 5.5847 -4.8857 26 1 1.4493 3.4432 -5.8914 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7968 1.1281 2.1363 31 1 3.7321 -0.4388 1.2943 32 1 5.8461 2.4262 2.1898 33 1 8.3049 2.3827 2.0941 34 1 9.4640 0.4853 1.0378 35 1 8.4961 -2.3123 0.5624 36 1 5.6920 -1.3324 0.1817 37 1 4.0493 3.1658 0.8356 38 1 3.9499 5.0117 -4.9848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -192.667364 kcal Electronic energy + Delta-G solvation = -26868.575057 eV Core-core repulsion = 22803.019180 eV Total energy + Delta-G solvation = -4065.555877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33718 -39.61776 -37.19517 -36.31796 -35.30497 -34.96225 -33.94826 -33.02450 -31.77924 -29.73107 -28.91601 -27.23978 -26.05687 -24.44540 -22.50253 -21.36556 -20.58093 -19.09214 -18.13559 -17.70145 -17.10410 -16.72633 -16.43098 -16.26720 -15.83088 -15.67804 -15.23828 -14.93753 -14.71202 -13.99353 -13.83825 -13.59268 -13.38276 -13.33874 -12.85810 -12.63005 -12.27743 -11.99608 -11.85099 -11.79251 -11.58416 -11.27903 -11.19084 -11.08090 -10.59135 -10.55892 -10.45673 -10.40998 -10.33146 -10.24592 -10.17361 -9.20273 -9.18683 -8.74339 -8.57105 -8.47861 -6.64580 -5.23916 1.32656 1.41681 2.25770 2.52744 2.92296 3.09245 3.17314 3.26808 3.71208 4.10563 4.20010 4.53643 4.70268 4.73531 4.90685 5.00340 5.15302 5.17451 5.22924 5.27991 5.31715 5.41976 5.52770 5.63172 5.64158 5.76546 5.86583 5.95951 6.07727 6.32970 6.47036 6.49509 6.59525 6.64571 6.70748 6.89441 7.41055 7.69403 7.72796 8.02687 8.19087 8.98141 10.29912 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.005233 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.957855 B = 5349.084612 C = 6600.839809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.437 3.563 4 O -0.475 6.475 5 C 0.180 3.820 6 H 0.132 0.868 7 C -0.079 4.079 8 C -0.060 4.060 9 C -0.116 4.116 10 C -0.103 4.103 11 C -0.147 4.147 12 C 0.105 3.895 13 O -0.497 6.497 14 C -0.134 4.134 15 N -1.108 6.108 16 S 2.708 3.292 17 O -1.001 7.001 18 O -0.999 6.999 19 C -1.017 5.017 20 H 0.112 0.888 21 C 0.134 3.866 22 N -0.848 5.848 23 Si 0.918 3.082 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.385 0.615 36 H 0.131 0.869 37 H 0.407 0.593 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -12.955 13.043 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.276 3.724 4 O -0.359 6.359 5 C 0.068 3.932 6 H 0.150 0.850 7 C -0.118 4.118 8 C -0.060 4.060 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.166 4.166 12 C 0.061 3.939 13 O -0.307 6.307 14 C -0.153 4.153 15 N -0.860 5.860 16 S 2.808 3.192 17 O -0.992 6.992 18 O -0.988 6.988 19 C -1.151 5.151 20 H 0.131 0.869 21 C -0.084 4.084 22 N -0.478 5.478 23 Si 0.743 3.257 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.197 1.197 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.240 0.760 36 H 0.149 0.851 37 H 0.238 0.762 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.219 -11.986 11.990 16.997 hybrid contribution -1.644 0.089 -0.056 1.648 sum -0.425 -11.897 11.934 16.856 Atomic orbital electron populations 1.23213 0.77008 1.03165 1.02582 1.86488 1.22960 1.33875 1.84633 1.24703 0.92850 0.81606 0.73244 1.90698 1.66428 1.36043 1.42732 1.20076 0.85637 0.85166 1.02324 0.85012 1.20840 0.91717 1.02309 0.96890 1.19481 0.94682 0.94154 0.97704 1.21106 0.94026 0.97937 1.00378 1.21017 0.94504 0.97697 0.98875 1.21388 1.00307 0.95340 0.99547 1.18408 0.90223 0.89509 0.95800 1.84886 1.78588 1.29084 1.38125 1.21301 0.93825 0.99805 1.00353 1.56074 1.84744 1.18041 1.27102 1.00728 0.75808 0.71953 0.70706 1.93377 1.85849 1.36320 1.83607 1.93388 1.66616 1.68057 1.70786 1.30704 1.18024 1.51983 1.14391 0.86945 1.24737 0.97925 0.89694 0.96031 1.69913 1.27344 1.31558 1.18998 0.86162 0.81718 0.78747 0.79121 1.18649 1.19595 1.19671 0.91819 0.88465 0.92195 0.89613 0.88369 0.85670 0.85543 0.85668 0.76018 0.85112 0.76171 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.23 10.37 -39.25 -0.41 -5.64 16 3 C 0.44 7.59 7.16 36.01 0.26 7.85 16 4 O -0.48 -9.75 14.16 -18.75 -0.27 -10.01 16 5 C 0.18 3.03 2.80 -69.08 -0.19 2.84 16 6 H 0.13 2.37 7.50 -51.93 -0.39 1.98 16 7 C -0.08 -0.96 4.91 -27.88 -0.14 -1.10 16 8 C -0.06 -0.81 4.95 -104.65 -0.52 -1.33 16 9 C -0.12 -1.56 9.30 -39.56 -0.37 -1.93 16 10 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 16 11 C -0.15 -1.91 9.99 -39.43 -0.39 -2.31 16 12 C 0.10 1.42 6.70 -39.22 -0.26 1.16 16 13 O -0.50 -5.98 13.50 -19.43 -0.26 -6.25 16 14 C -0.13 -1.81 9.64 -39.43 -0.38 -2.19 16 15 N -1.11 -21.98 4.34 -5.88 -0.03 -22.00 16 16 S 2.71 73.12 5.00 -107.50 -0.54 72.58 16 17 O -1.00 -29.94 18.02 -57.17 -1.03 -30.97 16 18 O -1.00 -29.22 17.36 -57.17 -0.99 -30.21 16 19 C -1.02 -29.09 9.65 30.60 0.30 -28.79 16 20 H 0.11 3.08 5.56 -52.49 -0.29 2.79 16 21 C 0.13 3.86 5.46 -17.82 -0.10 3.76 16 22 N -0.85 -25.60 13.19 55.43 0.73 -24.87 16 23 Si 0.92 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.10 0.96 7.94 -51.93 -0.41 0.55 16 32 H 0.13 1.46 7.94 -52.49 -0.42 1.04 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.38 2.39 9.06 45.56 0.41 2.81 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.41 6.89 8.72 -34.47 -0.30 6.59 16 38 H 0.29 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -40.07 349.66 -7.16 -47.23 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.49 Total: 10.63 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.13 Total: -22.29 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.71 Total: -46.87 kcal Atomic # 8 Polarization: -80.12 SS G_CDS: -2.96 Total: -83.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 73.12 SS G_CDS: -0.54 Total: 72.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -40.07 -7.16 -47.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.442 kcal (2) G-P(sol) polarization free energy of solvation -40.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds