Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47533 * 59.99910 * 5 3 2 7 7 C 1.53000 * 109.47220 * 299.99522 * 5 3 2 8 8 C 1.50697 * 109.47085 * 175.00451 * 7 5 3 9 9 C 1.38292 * 119.97592 * 90.00067 * 8 7 5 10 10 C 1.38239 * 120.11103 * 179.97438 * 9 8 7 11 11 C 1.38165 * 120.05649 * 0.02562 * 10 9 8 12 12 C 1.38708 * 119.94670 * 0.02562 * 11 10 9 13 13 O 1.35901 * 120.05915 * 180.02562 * 12 11 10 14 14 C 1.38124 * 119.97084 * 269.72013 * 8 7 5 15 15 N 1.46504 * 109.46911 * 179.97438 * 5 3 2 16 16 S 1.65600 * 119.99773 * 264.99676 * 15 5 3 17 17 O 1.42102 * 106.40171 * 178.54256 * 16 15 5 18 18 O 1.42100 * 106.40618 * 311.46133 * 16 15 5 19 19 C 1.76203 * 107.21876 * 65.00392 * 16 15 5 20 20 H 1.08002 * 119.99708 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99854 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00419 * 359.97438 * 21 19 16 23 23 Si 1.86807 * 119.99853 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47005 * 119.99771 * 23 21 19 26 26 H 1.48497 * 109.47245 * 240.00320 * 23 21 19 27 27 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 28 28 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 30 30 H 1.09005 * 109.46886 * 294.99894 * 7 5 3 31 31 H 1.08994 * 109.46869 * 54.99860 * 7 5 3 32 32 H 1.07998 * 119.94188 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.97085 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.02274 * 180.02562 * 11 10 9 35 35 H 0.96704 * 114.00073 * 89.99785 * 13 12 11 36 36 H 1.07999 * 120.02442 * 0.02562 * 14 8 7 37 37 H 0.96997 * 120.00124 * 85.00149 * 15 5 3 38 38 H 0.96997 * 120.00095 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8908 7 6 4.1139 0.5811 1.2483 8 6 5.6193 0.5518 1.1874 9 6 6.3530 1.5929 1.7262 10 6 7.7342 1.5686 1.6723 11 6 8.3850 0.5039 1.0793 12 6 7.6514 -0.5411 0.5372 13 8 8.2892 -1.5898 -0.0462 14 6 6.2654 -0.5177 0.5986 15 7 3.9817 2.6797 -0.0011 16 16 4.3358 3.4379 -1.4301 17 8 4.6664 4.7802 -1.1010 18 8 5.2135 2.5723 -2.1369 19 6 2.8451 3.5080 -2.3668 20 1 1.9337 3.0923 -1.9631 21 6 2.8421 4.0935 -3.6151 22 7 3.9519 4.6001 -4.1064 23 14 1.2618 4.1671 -4.6084 24 1 0.1628 3.5314 -3.8381 25 1 0.9171 5.5847 -4.8857 26 1 1.4493 3.4432 -5.8914 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.7968 1.1281 2.1363 31 1 3.7321 -0.4388 1.2943 32 1 5.8461 2.4262 2.1898 33 1 8.3049 2.3827 2.0941 34 1 9.4640 0.4853 1.0378 35 1 8.4961 -2.3123 0.5624 36 1 5.6920 -1.3324 0.1817 37 1 4.0493 3.1658 0.8356 38 1 3.9499 5.0117 -4.9848 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -225.858372 kcal Electronic energy + Delta-G solvation = -26870.014327 eV Core-core repulsion = 22803.019180 eV Total energy + Delta-G solvation = -4066.995147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62355 -40.61718 -38.27563 -37.54320 -37.42444 -36.37608 -36.18230 -35.18468 -32.98319 -30.73490 -30.13185 -28.26849 -28.23270 -25.61051 -23.48398 -22.42178 -21.86664 -21.10878 -19.66437 -19.03352 -18.59138 -18.28781 -18.04284 -17.34112 -17.12777 -17.05495 -16.75651 -16.33709 -15.96577 -15.92505 -15.40550 -14.90551 -14.64212 -14.53196 -14.05494 -13.94599 -13.86487 -13.31611 -13.16972 -13.06419 -12.94663 -12.83117 -12.60070 -12.56338 -12.46743 -12.35701 -12.31063 -12.18261 -11.89490 -11.70997 -11.36117 -11.28497 -10.97591 -10.49777 -9.72858 -9.47473 -8.78000 -7.47921 0.23232 0.35367 0.42856 1.17571 1.27126 1.27868 1.45870 1.69409 2.18131 2.54836 2.72039 2.84681 3.32035 3.62534 3.67147 3.79302 3.91262 4.04482 4.14009 4.28210 4.31100 4.38209 4.39439 4.45486 4.53829 4.69743 4.75580 4.83728 4.89198 5.06560 5.14175 5.25814 5.37833 5.48986 5.51642 5.65867 5.95749 5.98739 6.19226 6.73586 6.82328 6.94702 8.19120 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.005233 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.957855 B = 5349.084612 C = 6600.839809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.443 3.557 4 O -0.512 6.512 5 C 0.171 3.829 6 H 0.119 0.881 7 C -0.067 4.067 8 C -0.071 4.071 9 C -0.135 4.135 10 C -0.114 4.114 11 C -0.160 4.160 12 C 0.094 3.906 13 O -0.510 6.510 14 C -0.149 4.149 15 N -1.094 6.094 16 S 2.720 3.280 17 O -1.040 7.040 18 O -1.030 7.030 19 C -1.039 5.039 20 H 0.119 0.881 21 C 0.073 3.927 22 N -0.893 5.893 23 Si 0.984 3.016 24 H -0.256 1.256 25 H -0.257 1.257 26 H -0.253 1.253 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.409 0.591 36 H 0.145 0.855 37 H 0.421 0.579 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -14.494 13.727 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.284 3.716 4 O -0.400 6.400 5 C 0.061 3.939 6 H 0.136 0.864 7 C -0.106 4.106 8 C -0.072 4.072 9 C -0.153 4.153 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.049 3.951 13 O -0.323 6.323 14 C -0.167 4.167 15 N -0.851 5.851 16 S 2.821 3.179 17 O -1.030 7.030 18 O -1.020 7.020 19 C -1.172 5.172 20 H 0.137 0.863 21 C -0.140 4.140 22 N -0.525 5.525 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.181 1.181 26 H -0.177 1.177 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.268 0.732 36 H 0.163 0.837 37 H 0.256 0.744 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.227 -13.563 12.703 18.584 hybrid contribution -1.166 0.436 -0.192 1.259 sum -1.393 -13.127 12.511 18.187 Atomic orbital electron populations 1.23581 0.75029 1.05864 1.02297 1.86472 1.24754 1.31923 1.83803 1.24636 0.92844 0.81893 0.72264 1.90685 1.67177 1.37353 1.44749 1.20357 0.85967 0.83282 1.04311 0.86353 1.20881 0.90846 1.03710 0.95127 1.19662 0.95327 0.94272 0.97905 1.21426 0.94570 0.98498 1.00827 1.21347 0.94776 0.98272 0.98800 1.21668 1.01286 0.95339 0.99557 1.18619 0.90611 0.90125 0.95707 1.84816 1.78441 1.29692 1.39354 1.21569 0.94153 1.00454 1.00547 1.55323 1.84815 1.19489 1.25512 0.99981 0.75346 0.71140 0.71477 1.93313 1.86423 1.38763 1.84549 1.93339 1.67596 1.68484 1.72575 1.31053 1.18814 1.52097 1.15258 0.86297 1.25935 1.01805 0.88934 0.97351 1.69986 1.29767 1.32651 1.20067 0.85200 0.76873 0.79737 0.77965 1.17988 1.18132 1.17719 0.93288 0.84283 0.91393 0.87335 0.85293 0.84443 0.83706 0.84198 0.73239 0.83749 0.74422 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -9.35 10.37 -51.38 -0.53 -9.88 16 3 C 0.44 14.79 7.16 71.24 0.51 15.30 16 4 O -0.51 -20.64 14.16 21.96 0.31 -20.33 16 5 C 0.17 5.62 2.80 44.24 0.12 5.74 16 6 H 0.12 4.24 7.50 -2.39 -0.02 4.22 16 7 C -0.07 -1.49 4.91 29.85 0.15 -1.35 16 8 C -0.07 -1.83 4.95 -19.88 -0.10 -1.93 16 9 C -0.14 -3.50 9.30 22.28 0.21 -3.29 16 10 C -0.11 -2.86 10.04 22.25 0.22 -2.64 16 11 C -0.16 -4.06 9.99 22.36 0.22 -3.83 16 12 C 0.09 2.47 6.70 22.51 0.15 2.62 16 13 O -0.51 -11.74 13.50 -92.44 -1.25 -12.99 16 14 C -0.15 -3.84 9.64 22.37 0.22 -3.63 16 15 N -1.09 -43.30 4.34 -172.52 -0.75 -44.04 16 16 S 2.72 149.80 5.00 -56.49 -0.28 149.52 16 17 O -1.04 -63.88 18.02 -128.00 -2.31 -66.19 16 18 O -1.03 -61.83 17.36 -128.00 -2.22 -64.06 16 19 C -1.04 -60.03 9.65 67.73 0.65 -59.38 16 20 H 0.12 6.55 5.56 -2.91 -0.02 6.53 16 21 C 0.07 4.20 5.46 84.65 0.46 4.66 16 22 N -0.89 -54.77 13.19 21.45 0.28 -54.48 16 23 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 27 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 28 H 0.14 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.11 1.93 8.09 -2.38 -0.02 1.91 16 31 H 0.13 2.09 7.94 -2.39 -0.02 2.08 16 32 H 0.14 3.05 7.94 -2.91 -0.02 3.03 16 33 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.41 4.51 9.06 -74.05 -0.67 3.84 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.42 14.11 8.72 -96.75 -0.84 13.27 16 38 H 0.30 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -88.13 349.66 -1.09 -89.23 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.39 Total: 33.59 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 4.02 Total: -46.00 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -0.47 Total: -98.53 kcal Atomic # 8 Polarization: -167.45 SS G_CDS: -6.00 Total: -173.45 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 149.80 SS G_CDS: -0.28 Total: 149.52 kcal Total: -88.13 -1.09 -89.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.631 kcal (2) G-P(sol) polarization free energy of solvation -88.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds