Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99752 * 2 1 4 4 O 1.20819 * 120.00540 * 354.98794 * 3 2 1 5 5 C 1.50701 * 119.99553 * 174.98992 * 3 2 1 6 6 C 1.53003 * 109.46983 * 185.51237 * 5 3 2 7 7 H 1.08998 * 109.47356 * 305.52020 * 6 5 3 8 8 N 1.46505 * 109.47190 * 65.52204 * 6 5 3 9 9 S 1.65599 * 119.99950 * 212.57568 * 8 6 5 10 10 O 1.42105 * 106.39945 * 176.04601 * 9 8 6 11 11 O 1.42100 * 106.40308 * 308.96916 * 9 8 6 12 12 C 1.76199 * 107.21622 * 62.50860 * 9 8 6 13 13 H 1.07995 * 120.00363 * 3.94147 * 12 9 8 14 14 C 1.37883 * 120.00002 * 183.93644 * 12 9 8 15 15 N 1.31514 * 119.99463 * 5.03205 * 14 12 9 16 16 Si 1.86795 * 120.00134 * 185.03021 * 14 12 9 17 17 H 1.48496 * 109.47198 * 5.00449 * 16 14 12 18 18 H 1.48500 * 109.47366 * 125.00880 * 16 14 12 19 19 H 1.48507 * 109.47027 * 245.00476 * 16 14 12 20 20 C 1.50698 * 109.47156 * 185.51967 * 6 5 3 21 21 C 1.38273 * 119.94503 * 100.00018 * 20 6 5 22 22 C 1.38139 * 120.05859 * 180.02562 * 21 20 6 23 23 C 1.38738 * 119.94109 * 359.97438 * 22 21 20 24 24 O 1.35906 * 120.05424 * 179.97438 * 23 22 21 25 25 C 1.38729 * 119.89367 * 0.02562 * 23 22 21 26 26 C 1.38145 * 119.94044 * 0.02562 * 25 23 22 27 27 H 1.08999 * 109.47166 * 184.85400 * 1 2 3 28 28 H 1.08999 * 109.46389 * 304.85774 * 1 2 3 29 29 H 1.09001 * 109.46964 * 64.85663 * 1 2 3 30 30 H 1.08999 * 109.47434 * 65.51416 * 5 3 2 31 31 H 1.09004 * 109.47240 * 305.50996 * 5 3 2 32 32 H 0.97005 * 119.99746 * 32.57277 * 8 6 5 33 33 H 0.97000 * 119.99538 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.96532 * 0.28030 * 21 20 6 35 35 H 1.08001 * 120.02904 * 180.02562 * 22 21 20 36 36 H 0.96701 * 113.99942 * 89.99479 * 24 23 22 37 37 H 1.07998 * 120.03047 * 179.97438 * 25 23 22 38 38 H 1.07997 * 119.97581 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4070 2.2075 -0.0914 5 6 3.5619 1.2771 0.1140 6 6 3.9862 2.7426 0.2279 7 1 3.5757 3.3060 -0.6101 8 7 3.4821 3.3007 1.4852 9 16 3.0497 4.8971 1.5681 10 8 2.5219 5.1027 2.8713 11 8 4.1455 5.6372 1.0476 12 6 1.7117 5.1339 0.4463 13 1 1.2954 4.2899 -0.0835 14 6 1.1961 6.3967 0.2450 15 7 1.7652 7.4375 0.8130 16 14 -0.3105 6.6293 -0.8344 17 1 -0.8291 5.3023 -1.2531 18 1 -1.3594 7.3524 -0.0714 19 1 0.0592 7.4182 -2.0371 20 6 5.4903 2.8333 0.2054 21 6 6.1435 3.1800 -0.9629 22 6 7.5222 3.2633 -0.9863 23 6 8.2515 2.9993 0.1640 24 8 9.6080 3.0801 0.1435 25 6 7.5938 2.6517 1.3351 26 6 6.2150 2.5687 1.3529 27 1 -0.3633 -1.0240 0.0870 28 1 -0.3632 0.5874 0.8433 29 1 -0.3633 0.4366 -0.9303 30 1 4.0180 0.8346 -0.7716 31 1 3.8888 0.7342 1.0009 32 1 3.4016 2.7350 2.2691 33 1 1.4026 8.3259 0.6711 34 1 5.5750 3.3898 -1.8569 35 1 8.0319 3.5345 -1.8990 36 1 9.9532 3.9562 0.3632 37 1 8.1594 2.4453 2.2317 38 1 5.7025 2.2977 2.2641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = -190.971502 kcal Electronic energy + Delta-G solvation = -26804.473513 eV Core-core repulsion = 22738.991175 eV Total energy + Delta-G solvation = -4065.482339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36326 -39.58874 -37.44083 -36.26731 -35.11559 -34.71369 -33.84000 -32.93342 -30.90158 -30.31992 -29.32490 -27.27926 -25.95994 -24.00506 -22.64506 -21.32490 -20.29480 -18.99865 -18.30689 -17.55038 -17.46063 -16.73728 -16.33787 -15.89753 -15.79289 -15.57022 -15.13231 -14.85537 -14.51863 -13.95411 -13.74122 -13.61948 -13.27061 -13.25066 -13.16558 -12.57264 -12.13355 -12.01388 -11.93753 -11.87987 -11.51925 -11.27122 -11.14867 -10.97450 -10.62199 -10.48489 -10.34763 -10.33109 -10.18103 -10.12792 -10.06964 -9.16808 -9.05784 -8.79283 -8.48590 -8.27384 -6.56208 -5.12403 1.34796 1.54911 2.42748 2.46803 2.85417 3.12990 3.21149 3.32426 3.74056 4.17624 4.35310 4.70359 4.76772 4.79130 4.85063 5.04355 5.11387 5.18752 5.19676 5.28312 5.34463 5.48522 5.56933 5.63551 5.69629 5.89106 5.94354 5.97333 6.17906 6.44057 6.45760 6.55819 6.56316 6.74157 6.94491 6.95056 7.49089 7.70745 7.86198 7.92320 8.46584 9.10482 10.37635 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.005560 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.474006 B = 5034.835964 C = 6682.100486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.446 3.554 4 O -0.465 6.465 5 C -0.113 4.113 6 C 0.213 3.787 7 H 0.111 0.889 8 N -1.125 6.125 9 S 2.710 3.290 10 O -1.016 7.016 11 O -0.998 6.998 12 C -1.012 5.012 13 H 0.126 0.874 14 C 0.132 3.868 15 N -0.851 5.851 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.093 4.093 21 C -0.084 4.084 22 C -0.144 4.144 23 C 0.097 3.903 24 O -0.504 6.504 25 C -0.147 4.147 26 C -0.083 4.083 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.399 0.601 33 H 0.286 0.714 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.388 0.612 37 H 0.125 0.875 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 -14.245 -3.465 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.287 3.713 4 O -0.349 6.349 5 C -0.152 4.152 6 C 0.104 3.896 7 H 0.128 0.872 8 N -0.876 5.876 9 S 2.810 3.190 10 O -1.006 7.006 11 O -0.987 6.987 12 C -1.146 5.146 13 H 0.144 0.856 14 C -0.085 4.085 15 N -0.482 5.482 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.162 4.162 23 C 0.053 3.947 24 O -0.314 6.314 25 C -0.166 4.166 26 C -0.101 4.101 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.229 0.771 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.143 0.857 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.219 -13.571 -3.213 15.270 hybrid contribution -1.366 0.377 -0.442 1.484 sum 4.853 -13.194 -3.656 14.526 Atomic orbital electron populations 1.23215 0.76629 1.03090 1.02872 1.86460 1.23211 1.34001 1.84988 1.23723 0.91992 0.81587 0.74012 1.90830 1.66604 1.35346 1.42091 1.21720 0.88360 0.98873 1.06229 1.19235 0.88703 0.92394 0.89276 0.87152 1.56156 1.82358 1.32661 1.16450 1.00585 0.75065 0.68875 0.74439 1.93366 1.81364 1.83319 1.42579 1.93372 1.56272 1.67898 1.81203 1.30793 1.37563 1.01480 1.44742 0.85569 1.24751 0.96585 0.94039 0.93077 1.69960 1.38489 1.00333 1.39438 0.86199 0.80997 0.79043 0.79671 1.18474 1.19974 1.19889 1.20258 0.95594 0.99730 0.93952 1.20921 0.93704 0.97609 0.98010 1.21318 0.94175 1.02288 0.98433 1.18456 0.82481 1.00704 0.93067 1.84781 1.17387 1.36751 1.92522 1.21330 0.94695 1.02977 0.97552 1.20812 0.92959 0.98368 0.97998 0.88639 0.91665 0.91992 0.86696 0.87355 0.77084 0.90350 0.85206 0.85568 0.75616 0.85705 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.58 101.05 1.07 1.46 16 2 O -0.37 -4.73 10.57 -39.24 -0.41 -5.14 16 3 C 0.45 6.56 7.78 36.01 0.28 6.84 16 4 O -0.46 -8.85 12.61 -18.74 -0.24 -9.08 16 5 C -0.11 -1.35 5.37 -27.88 -0.15 -1.50 16 6 C 0.21 3.44 1.93 -69.08 -0.13 3.31 16 7 H 0.11 1.98 7.29 -51.93 -0.38 1.60 16 8 N -1.12 -21.58 4.07 -5.88 -0.02 -21.61 16 9 S 2.71 72.22 5.00 -107.50 -0.54 71.68 16 10 O -1.02 -30.26 18.02 -57.17 -1.03 -31.29 16 11 O -1.00 -28.99 17.66 -57.17 -1.01 -30.00 16 12 C -1.01 -28.40 9.34 30.60 0.29 -28.11 16 13 H 0.13 3.36 5.09 -52.49 -0.27 3.10 16 14 C 0.13 3.78 5.46 -17.82 -0.10 3.69 16 15 N -0.85 -25.62 13.06 55.43 0.72 -24.90 16 16 Si 0.92 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.09 -1.43 4.96 -104.60 -0.52 -1.95 16 21 C -0.08 -1.21 9.66 -39.60 -0.38 -1.60 16 22 C -0.14 -1.94 9.99 -39.43 -0.39 -2.34 16 23 C 0.10 1.32 6.71 -39.22 -0.26 1.05 16 24 O -0.50 -5.92 13.50 -19.45 -0.26 -6.18 16 25 C -0.15 -1.99 9.99 -39.43 -0.39 -2.38 16 26 C -0.08 -1.19 9.32 -39.60 -0.37 -1.56 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.77 8.09 -51.93 -0.42 0.34 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 6.46 8.69 -34.47 -0.30 6.16 16 33 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.13 1.66 8.03 -52.49 -0.42 1.24 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.39 2.89 9.06 45.56 0.41 3.30 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.13 1.59 7.62 -52.49 -0.40 1.19 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -39.78 347.29 -7.09 -46.87 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.45 Total: 11.08 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -1.07 Total: -23.10 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.70 Total: -46.50 kcal Atomic # 8 Polarization: -78.75 SS G_CDS: -2.95 Total: -81.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 72.22 SS G_CDS: -0.54 Total: 71.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.78 -7.09 -46.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.105 kcal (2) G-P(sol) polarization free energy of solvation -39.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds