Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99877 * 2 1 4 4 O 1.20822 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47280 * 59.99996 * 5 3 2 7 7 N 1.46503 * 109.47063 * 179.97438 * 5 3 2 8 8 S 1.65595 * 120.00222 * 265.00035 * 7 5 3 9 9 O 1.42100 * 106.40268 * 178.54210 * 8 7 5 10 10 O 1.42099 * 106.40253 * 311.45838 * 8 7 5 11 11 C 1.76205 * 107.21763 * 64.99864 * 8 7 5 12 12 H 1.08000 * 119.99550 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99737 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00147 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99707 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47225 * 89.99744 * 15 13 11 17 17 H 1.48496 * 109.47102 * 209.99975 * 15 13 11 18 18 H 1.48502 * 109.47145 * 330.00003 * 15 13 11 19 19 C 1.50708 * 109.47325 * 299.99841 * 5 3 2 20 20 C 1.38163 * 120.02715 * 265.02667 * 19 5 3 21 21 C 1.38243 * 120.05438 * 179.97438 * 20 19 5 22 22 C 1.38289 * 120.11362 * 359.97438 * 21 20 19 23 23 C 1.38125 * 120.05159 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02785 * 85.00178 * 19 5 3 25 25 O 1.35899 * 120.05461 * 359.97438 * 24 19 5 26 26 C 1.42903 * 116.99930 * 180.02562 * 25 24 19 27 27 H 1.09007 * 109.46673 * 299.99908 * 1 2 3 28 28 H 1.08993 * 109.47468 * 59.99882 * 1 2 3 29 29 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 30 30 H 0.97004 * 119.99666 * 85.00015 * 7 5 3 31 31 H 0.97001 * 119.99548 * 180.02562 * 14 13 11 32 32 H 1.08001 * 119.97059 * 359.94984 * 20 19 5 33 33 H 1.08004 * 119.94070 * 180.02562 * 21 20 19 34 34 H 1.07993 * 119.96940 * 180.28495 * 22 21 20 35 35 H 1.08000 * 120.02328 * 179.97438 * 23 22 21 36 36 H 1.08998 * 109.47294 * 300.00489 * 26 25 24 37 37 H 1.08995 * 109.47056 * 60.00501 * 26 25 24 38 38 H 1.08998 * 109.46876 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9556 0.7809 -0.8908 7 7 3.9817 2.6797 -0.0011 8 16 4.3358 3.4379 -1.4300 9 8 4.6664 4.7802 -1.1008 10 8 5.2135 2.5723 -2.1368 11 6 2.8450 3.5080 -2.3667 12 1 1.9335 3.0930 -1.9627 13 6 2.8423 4.0927 -3.6154 14 7 3.9523 4.5985 -4.1071 15 14 1.2617 4.1676 -4.6081 16 1 0.5372 5.4246 -4.2912 17 1 1.5852 4.1345 -6.0570 18 1 0.4061 3.0033 -4.2652 19 6 4.1056 0.5914 1.2296 20 6 4.3961 1.3308 2.3600 21 6 4.8903 0.7044 3.4889 22 6 5.0949 -0.6633 3.4901 23 6 4.8061 -1.4069 2.3625 24 6 4.3104 -0.7805 1.2280 25 8 4.0245 -1.5101 0.1177 26 6 4.2597 -2.9179 0.1882 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.0493 3.1657 0.8357 31 1 3.9502 5.0101 -4.9854 32 1 4.2372 2.3990 2.3615 33 1 5.1163 1.2841 4.3717 34 1 5.4767 -1.1508 4.3749 35 1 4.9664 -2.4749 2.3638 36 1 5.3142 -3.1002 0.3950 37 1 3.6534 -3.3480 0.9853 38 1 3.9903 -3.3792 -0.7619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193005245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = -171.881779 kcal Electronic energy + Delta-G solvation = -27294.378901 eV Core-core repulsion = 23229.724355 eV Total energy + Delta-G solvation = -4064.654546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63813 -39.69717 -37.53567 -36.26194 -35.26047 -34.75958 -33.95568 -32.99539 -30.78608 -30.21598 -28.12161 -27.28933 -26.07004 -25.88465 -22.23155 -22.16977 -20.48308 -19.15821 -18.19176 -17.68242 -17.04490 -16.76734 -16.56133 -15.97132 -15.79718 -15.71183 -15.61381 -14.84305 -14.49658 -14.42667 -13.93881 -13.62723 -13.42462 -13.37872 -13.17531 -12.64070 -12.44621 -12.00962 -11.97158 -11.80481 -11.41694 -11.16188 -11.13985 -11.11353 -10.95406 -10.56236 -10.47380 -10.45759 -10.35285 -10.27780 -10.19593 -9.24132 -9.16618 -8.87795 -8.59817 -8.15950 -6.62632 -5.21709 1.20322 1.41020 2.24404 2.63185 3.03591 3.13355 3.19413 3.27583 3.28169 3.72641 4.13770 4.54736 4.61462 4.72986 4.77346 4.93821 5.03119 5.11508 5.19627 5.24486 5.31643 5.34210 5.39686 5.45855 5.50327 5.63288 5.70738 5.80611 5.89445 6.15855 6.25734 6.39938 6.50241 6.66167 6.70682 6.76345 7.36761 7.43393 7.71794 8.10042 8.25110 9.00102 10.31968 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.005102 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.559288 B = 5486.782094 C = 6191.512241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.447 3.553 4 O -0.479 6.479 5 C 0.225 3.775 6 H 0.142 0.858 7 N -1.110 6.110 8 S 2.707 3.293 9 O -0.999 6.999 10 O -1.001 7.001 11 C -1.015 5.015 12 H 0.113 0.887 13 C 0.134 3.866 14 N -0.848 5.848 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.120 4.120 20 C -0.065 4.065 21 C -0.158 4.158 22 C -0.077 4.077 23 C -0.211 4.211 24 C 0.154 3.846 25 O -0.300 6.300 26 C 0.029 3.971 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.406 0.594 31 H 0.290 0.710 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -15.367 12.895 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.286 3.714 4 O -0.363 6.363 5 C 0.113 3.887 6 H 0.159 0.841 7 N -0.862 5.862 8 S 2.808 3.192 9 O -0.989 6.989 10 O -0.991 6.991 11 C -1.149 5.149 12 H 0.131 0.869 13 C -0.083 4.083 14 N -0.479 5.479 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.122 4.122 20 C -0.084 4.084 21 C -0.176 4.176 22 C -0.095 4.095 23 C -0.230 4.230 24 C 0.108 3.892 25 O -0.212 6.212 26 C -0.067 4.067 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.240 0.760 31 H 0.100 0.900 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.574 -14.680 12.151 19.121 hybrid contribution -1.605 0.051 -0.123 1.610 sum -3.179 -14.629 12.028 19.203 Atomic orbital electron populations 1.23196 0.77422 1.02989 1.02409 1.86557 1.22406 1.33341 1.84294 1.24383 0.92408 0.81675 0.72952 1.90680 1.66279 1.36076 1.43301 1.18596 0.86268 0.84163 0.99645 0.84064 1.56182 1.84931 1.17858 1.27274 1.00736 0.75915 0.71934 0.70617 1.93382 1.85866 1.36126 1.83561 1.93376 1.66768 1.68118 1.70794 1.30644 1.17892 1.52064 1.14307 0.86871 1.24732 0.97956 0.89671 0.95976 1.69907 1.27335 1.31530 1.19085 0.86160 0.81589 0.79613 0.78132 1.19208 1.20073 1.18801 1.18960 1.06479 0.90814 0.95944 1.20866 0.96045 1.00082 0.91382 1.20998 1.03284 0.94794 0.98555 1.20943 0.97348 0.93960 0.97295 1.21171 1.07444 1.00489 0.93873 1.18702 0.93909 0.90349 0.86264 1.86192 1.80882 1.20269 1.33890 1.23064 1.00774 0.79066 1.03760 0.92382 0.91866 0.88636 0.76037 0.90001 0.84936 0.85598 0.85797 0.85213 0.92741 0.92780 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 101.05 1.07 1.51 16 2 O -0.35 -5.80 10.17 -39.45 -0.40 -6.21 16 3 C 0.45 8.69 7.15 36.00 0.26 8.95 16 4 O -0.48 -10.45 14.16 -18.75 -0.27 -10.72 16 5 C 0.22 4.34 2.75 -70.23 -0.19 4.15 16 6 H 0.14 2.88 7.05 -51.93 -0.37 2.51 16 7 N -1.11 -23.56 4.83 -6.88 -0.03 -23.59 16 8 S 2.71 74.39 5.00 -107.50 -0.54 73.85 16 9 O -1.00 -30.03 18.02 -57.17 -1.03 -31.06 16 10 O -1.00 -29.53 17.36 -57.17 -0.99 -30.52 16 11 C -1.02 -29.29 9.65 30.60 0.30 -28.99 16 12 H 0.11 3.14 5.56 -52.49 -0.29 2.85 16 13 C 0.13 3.88 5.46 -17.82 -0.10 3.78 16 14 N -0.85 -25.52 13.19 55.43 0.73 -24.79 16 15 Si 0.92 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.12 -1.91 4.99 -104.47 -0.52 -2.43 16 20 C -0.07 -0.90 9.29 -39.61 -0.37 -1.27 16 21 C -0.16 -1.77 10.04 -39.56 -0.40 -2.17 16 22 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 23 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 24 C 0.15 2.18 6.61 -39.22 -0.26 1.92 16 25 O -0.30 -4.16 9.37 -19.42 -0.18 -4.34 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.41 7.42 6.56 -34.47 -0.23 7.19 16 31 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 32 H 0.13 1.71 6.08 -52.49 -0.32 1.39 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 36 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -38.43 342.19 -6.55 -44.99 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.00 Total: 7.79 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 0.02 Total: -17.19 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.70 Total: -48.38 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -2.87 Total: -82.84 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 74.39 SS G_CDS: -0.54 Total: 73.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.43 -6.55 -44.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.896 kcal (2) G-P(sol) polarization free energy of solvation -38.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds