Wall clock time and date at job start Tue Mar 31 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34745 * 117.00110 * 2 1 4 4 O 1.21511 * 120.00195 * 0.02562 * 3 2 1 5 5 C 1.47399 * 120.00304 * 180.02562 * 3 2 1 6 6 C 1.39770 * 120.19626 * 0.02562 * 5 3 2 7 7 C 1.37763 * 119.90698 * 180.02562 * 6 5 3 8 8 S 1.76201 * 119.84972 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.39942 * 23.56808 * 8 7 6 10 10 O 1.42098 * 106.39772 * 156.48204 * 8 7 6 11 11 N 1.65599 * 107.21978 * 270.02837 * 8 7 6 12 12 C 1.46495 * 120.00058 * 64.99901 * 11 8 7 13 13 H 1.08992 * 109.47286 * 334.99733 * 12 11 8 14 14 C 1.52994 * 109.47173 * 95.00029 * 12 11 8 15 15 C 1.50708 * 109.46841 * 214.99925 * 12 11 8 16 16 H 1.08001 * 119.99756 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99714 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00407 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99852 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46883 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47182 * 120.00003 * 19 17 15 22 22 H 1.48498 * 109.46878 * 239.99909 * 19 17 15 23 23 C 1.38571 * 120.30435 * 0.02562 * 7 6 5 24 24 C 1.38046 * 120.40235 * 0.23364 * 23 7 6 25 25 C 1.38710 * 120.09341 * 359.48428 * 24 23 7 26 26 O 1.35631 * 120.15918 * 180.23221 * 25 24 23 27 27 H 1.09001 * 109.46938 * 299.99446 * 1 2 3 28 28 H 1.08992 * 109.47592 * 59.99624 * 1 2 3 29 29 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.04728 * 0.03945 * 6 5 3 31 31 H 0.97004 * 119.99623 * 244.99859 * 11 8 7 32 32 H 1.09004 * 109.46960 * 59.99996 * 14 12 11 33 33 H 1.09001 * 109.47543 * 179.97438 * 14 12 11 34 34 H 1.08991 * 109.47231 * 299.99992 * 14 12 11 35 35 H 0.96998 * 120.00323 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.79439 * 179.97438 * 23 7 6 37 37 H 1.07998 * 119.95547 * 179.74378 * 24 23 7 38 38 H 0.96703 * 114.00617 * 270.30098 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5357 1.2778 -0.0006 6 6 4.3010 0.1082 -0.0017 7 6 5.6764 0.1873 -0.0016 8 16 6.6397 -1.2881 -0.0023 9 8 5.8128 -2.3069 -0.5478 10 8 7.9056 -0.9404 -0.5462 11 7 6.9071 -1.6997 1.5792 12 6 5.7825 -2.0817 2.4369 13 1 4.8653 -1.6342 2.0542 14 6 5.6419 -3.6051 2.4452 15 6 6.0325 -1.5926 3.8403 16 1 6.9382 -1.0511 4.0702 17 6 5.1049 -1.8365 4.8307 18 7 4.0017 -2.4955 4.5507 19 14 5.4143 -1.2297 6.5702 20 1 6.7181 -0.5209 6.6225 21 1 4.3281 -0.2995 6.9705 22 1 5.4428 -2.3869 7.5003 23 6 6.3058 1.4218 0.0000 24 6 5.5623 2.5850 0.0064 25 6 4.1766 2.5247 0.0006 26 8 3.4449 3.6667 0.0022 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8148 -0.8562 -0.0027 31 1 7.8084 -1.6879 1.9377 32 1 6.5592 -4.0526 2.8280 33 1 4.8055 -3.8894 3.0837 34 1 5.4612 -3.9588 1.4302 35 1 3.3492 -2.6675 5.2476 36 1 7.3845 1.4742 0.0004 37 1 6.0604 3.5433 0.0118 38 1 3.2329 3.9970 0.8860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197266009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:58 Heat of formation + Delta-G solvation = -172.930423 kcal Electronic energy + Delta-G solvation = -26734.349447 eV Core-core repulsion = 22669.649428 eV Total energy + Delta-G solvation = -4064.700019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73680 -39.26027 -36.99551 -36.82918 -36.20015 -35.50622 -35.39612 -32.27022 -31.77860 -30.29450 -28.34261 -27.70900 -25.27755 -24.28763 -23.12548 -21.41344 -21.00263 -19.18003 -18.65233 -17.97199 -17.53232 -17.12897 -16.37180 -16.21968 -16.10559 -15.85456 -15.48521 -15.20109 -14.56481 -14.33852 -13.65287 -13.54337 -13.43218 -13.12419 -12.71545 -12.50303 -12.45635 -12.26674 -12.07809 -11.77533 -11.71705 -11.59298 -11.21955 -11.19824 -11.06813 -10.76228 -10.72459 -10.60721 -10.34901 -10.29123 -10.18769 -9.32991 -9.22349 -9.20137 -8.69876 -8.38227 -6.20268 -4.28840 0.38265 0.81795 0.97229 2.39907 2.66760 3.17671 3.26278 3.27424 3.29725 3.63180 3.92764 4.18868 4.28197 4.40896 4.69653 4.83648 5.07278 5.11452 5.11689 5.19590 5.21014 5.37449 5.51772 5.66501 5.73521 5.92190 5.99027 6.23975 6.33260 6.46389 6.76447 7.00040 7.03716 7.39559 7.51302 7.63964 7.73186 7.74248 7.97265 8.19896 8.74595 9.37993 10.85077 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.005610 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.687439 B = 4990.184342 C = 6114.062958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.349 6.349 3 C 0.514 3.486 4 O -0.498 6.498 5 C -0.180 4.180 6 C 0.063 3.937 7 C -0.692 4.692 8 S 2.691 3.309 9 O -0.957 6.957 10 O -0.978 6.978 11 N -1.097 6.097 12 C 0.273 3.727 13 H 0.041 0.959 14 C -0.159 4.159 15 C -0.527 4.527 16 H 0.065 0.935 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.033 3.967 24 C -0.182 4.182 25 C 0.222 3.778 26 O -0.480 6.480 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.161 0.839 31 H 0.411 0.589 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.027 0.973 35 H 0.264 0.736 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 7.280 -6.906 10.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.265 6.265 3 C 0.359 3.641 4 O -0.387 6.387 5 C -0.183 4.183 6 C 0.044 3.956 7 C -0.776 4.776 8 S 2.777 3.223 9 O -0.947 6.947 10 O -0.968 6.968 11 N -0.859 5.859 12 C 0.169 3.831 13 H 0.058 0.942 14 C -0.218 4.218 15 C -0.566 4.566 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 C 0.013 3.987 24 C -0.201 4.201 25 C 0.176 3.824 26 O -0.293 6.293 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.178 0.822 31 H 0.245 0.755 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.657 7.032 -8.227 10.949 hybrid contribution -0.264 1.107 2.076 2.368 sum -1.921 8.140 -6.150 10.381 Atomic orbital electron populations 1.23288 0.75769 1.04030 1.02357 1.86606 1.23715 1.32143 1.84086 1.20792 0.88518 0.81779 0.73053 1.90838 1.66488 1.35719 1.45612 1.19586 0.90201 0.94462 1.14049 1.21248 0.91694 0.98902 0.83770 1.31297 1.07485 1.20289 1.18545 1.01963 0.73105 0.73674 0.73510 1.93585 1.69896 1.53869 1.77332 1.93529 1.40542 1.84843 1.77934 1.55573 1.17640 1.82731 1.29953 1.18570 0.82393 0.92638 0.89488 0.94151 1.22238 1.02393 0.97642 0.99547 1.21315 1.05966 1.36458 0.92901 0.91669 1.24910 0.94955 0.94863 0.99062 1.69883 1.09068 1.39660 1.33538 0.86453 0.78272 0.78614 0.84139 1.19696 1.21007 1.20817 1.21035 1.00820 0.90202 0.86594 1.21458 0.92327 0.99948 1.06334 1.18650 0.89557 0.84524 0.89675 1.84668 1.72762 1.37883 1.33960 0.91764 0.91997 0.87698 0.82173 0.75493 0.94817 0.88936 0.95433 0.92580 0.83174 0.83558 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.52 16 2 O -0.35 -5.42 9.82 -40.61 -0.40 -5.82 16 3 C 0.51 8.44 7.89 34.46 0.27 8.71 16 4 O -0.50 -8.55 14.95 -26.60 -0.40 -8.95 16 5 C -0.18 -2.89 5.89 -104.86 -0.62 -3.51 16 6 C 0.06 1.06 8.44 -39.18 -0.33 0.72 16 7 C -0.69 -11.16 5.81 -39.63 -0.23 -11.39 16 8 S 2.69 47.30 5.64 -107.50 -0.61 46.69 16 9 O -0.96 -19.17 16.52 -57.17 -0.94 -20.11 16 10 O -0.98 -17.71 17.26 -57.17 -0.99 -18.69 16 11 N -1.10 -20.51 5.46 -5.89 -0.03 -20.55 16 12 C 0.27 6.17 2.76 -69.08 -0.19 5.98 16 13 H 0.04 0.96 7.22 -51.93 -0.37 0.58 16 14 C -0.16 -3.63 9.29 37.15 0.35 -3.29 16 15 C -0.53 -12.92 8.76 -34.44 -0.30 -13.22 16 16 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.88 -23.14 11.32 55.43 0.63 -22.51 16 19 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.03 0.45 9.50 -39.53 -0.38 0.07 16 24 C -0.18 -2.25 9.98 -39.48 -0.39 -2.65 16 25 C 0.22 3.13 6.72 -38.67 -0.26 2.87 16 26 O -0.48 -6.15 11.58 -40.47 -0.47 -6.62 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.16 2.71 7.15 -52.48 -0.38 2.33 16 31 H 0.41 6.88 8.83 -34.47 -0.30 6.58 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 34 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 35 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.15 1.71 7.60 -52.49 -0.40 1.31 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.40 3.56 9.06 45.56 0.41 3.97 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -32.27 344.63 -7.56 -39.82 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.41 Total: 9.45 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.11 Total: -12.62 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.60 Total: -43.06 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -3.20 Total: -60.19 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 47.30 SS G_CDS: -0.61 Total: 46.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.27 -7.56 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197266009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.106 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds