Wall clock time and date at job start Tue Mar 31 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47101 * 2 1 4 4 C 1.42900 * 113.99857 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47066 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47473 * 64.99430 * 5 4 3 7 7 C 1.42893 * 114.00228 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47415 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47366 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46981 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00240 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99993 * 179.97438 * 10 9 8 13 13 C 1.48216 * 119.96950 * 180.02562 * 12 10 9 14 14 C 1.47139 * 110.33900 * 102.47479 * 13 12 10 15 15 C 1.53800 * 111.84388 * 58.29922 * 14 13 12 16 16 N 1.43463 * 107.95594 * 281.66239 * 15 14 13 17 17 C 1.36935 * 118.94418 * 273.61114 * 16 15 14 18 18 H 1.08002 * 119.99775 * 27.13389 * 17 16 15 19 19 C 1.38811 * 120.00114 * 207.14382 * 17 16 15 20 20 N 1.31615 * 120.00227 * 26.49459 * 19 17 16 21 21 Si 1.86806 * 119.99744 * 206.50038 * 19 17 16 22 22 H 1.48495 * 109.47040 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47035 * 59.99654 * 21 19 17 24 24 H 1.48493 * 109.47219 * 299.99924 * 21 19 17 25 25 C 1.48860 * 122.11873 * 93.88979 * 16 15 14 26 26 C 1.43623 * 119.97019 * 359.97438 * 12 10 9 27 27 H 1.08996 * 109.46956 * 60.00356 * 1 2 3 28 28 H 1.08995 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47095 * 300.00076 * 1 2 3 30 30 H 1.09000 * 109.46879 * 239.99421 * 2 1 3 31 31 H 1.09001 * 109.46671 * 120.00019 * 2 1 3 32 32 H 1.09001 * 109.47066 * 59.99588 * 4 3 2 33 33 H 1.08998 * 109.46773 * 299.99842 * 4 3 2 34 34 H 1.09006 * 109.47120 * 305.00158 * 5 4 3 35 35 H 1.08998 * 109.47482 * 185.00236 * 5 4 3 36 36 H 1.08996 * 109.47292 * 60.00086 * 7 6 5 37 37 H 1.09006 * 109.47163 * 300.00074 * 7 6 5 38 38 H 1.09001 * 109.46500 * 59.99897 * 8 7 6 39 39 H 1.08998 * 109.46865 * 300.00246 * 8 7 6 40 40 H 1.09004 * 109.46867 * 60.00158 * 9 8 7 41 41 H 1.08998 * 109.47618 * 300.00138 * 9 8 7 42 42 H 1.08998 * 109.32711 * 342.20666 * 13 12 10 43 43 H 1.09003 * 109.17959 * 222.64946 * 13 12 10 44 44 H 1.09001 * 109.00884 * 297.68394 * 14 13 12 45 45 H 1.09005 * 108.94169 * 178.85941 * 14 13 12 46 46 H 1.08997 * 109.76249 * 162.04703 * 15 14 13 47 47 H 1.09000 * 109.80883 * 41.30044 * 15 14 13 48 48 H 0.96998 * 119.99990 * 5.79357 * 20 19 17 49 49 H 1.09002 * 109.48060 * 80.34523 * 25 16 15 50 50 H 1.08998 * 109.48404 * 200.37951 * 25 16 15 51 51 H 1.08999 * 108.87197 * 31.46418 * 26 12 10 52 52 H 1.09000 * 108.87340 * 149.99854 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5458 1.2198 7 6 3.7193 4.9346 1.3212 8 6 3.2185 5.4772 2.6613 9 6 3.5625 6.9640 2.7702 10 6 3.0686 7.4985 4.0898 11 8 2.4981 6.7627 4.8668 12 7 3.2618 8.7941 4.4068 13 6 2.7762 9.3190 5.7051 14 6 3.8941 9.4549 6.6521 15 6 4.9928 10.3852 6.1109 16 7 5.7693 9.6452 5.1583 17 6 6.8177 8.8859 5.6047 18 1 6.8073 8.4880 6.6087 19 6 7.8940 8.6278 4.7669 20 7 8.1912 9.4688 3.7991 21 14 8.9206 7.0866 5.0131 22 1 10.0015 7.0441 3.9958 23 1 8.0565 5.8878 4.8670 24 1 9.5193 7.1025 6.3719 25 6 5.4757 9.6810 3.6993 26 6 3.9390 9.6647 3.4868 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8333 0.9766 -0.8908 33 1 3.8340 0.9764 0.8892 34 1 3.3493 3.4411 -0.8430 35 1 4.9082 3.0254 -0.0912 36 1 3.2407 5.4785 0.5069 37 1 4.7999 5.0634 1.2585 38 1 3.6975 4.9332 3.4754 39 1 2.1380 5.3483 2.7244 40 1 3.0838 7.5082 1.9560 41 1 4.6430 7.0925 2.7072 42 1 2.0357 8.6335 6.1171 43 1 2.3164 10.2946 5.5475 44 1 4.3229 8.4703 6.8389 45 1 3.5157 9.8607 7.5904 46 1 5.6316 10.7163 6.9296 47 1 4.5390 11.2490 5.6251 48 1 7.7125 10.3090 3.7227 49 1 5.8964 10.5885 3.2661 50 1 5.9185 8.8091 3.2179 51 1 3.7275 9.3356 2.4694 52 1 3.5587 10.6781 3.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197810414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:56 Heat of formation + Delta-G solvation = -113.240362 kcal Electronic energy + Delta-G solvation = -29220.001373 eV Core-core repulsion = 25220.354784 eV Total energy + Delta-G solvation = -3999.646589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.83783 -38.65714 -37.56274 -37.07785 -34.43348 -33.77779 -32.69960 -31.83385 -30.78867 -29.38366 -27.75555 -26.62266 -25.08478 -23.70463 -23.03663 -22.71530 -22.46318 -20.96752 -19.77529 -18.45154 -17.48453 -17.22469 -16.96983 -16.55521 -16.05951 -15.96104 -15.68505 -15.12705 -15.06885 -14.41257 -14.26636 -13.85637 -13.70602 -13.54287 -13.30939 -13.20149 -12.91215 -12.78324 -12.61533 -12.30591 -12.23437 -11.86298 -11.82595 -11.65293 -11.50609 -11.29364 -11.19803 -11.08680 -10.86276 -10.74677 -10.68932 -10.31209 -10.29026 -10.25955 -10.01284 -9.83603 -9.59748 -9.39395 -9.30426 -8.33513 -8.11820 -6.90082 -6.08032 -3.25118 3.08317 3.36591 3.43523 3.48717 3.52745 3.69551 3.73072 4.58642 4.74566 4.77806 4.87787 4.95364 5.01532 5.07763 5.08571 5.11120 5.14013 5.22626 5.27201 5.39202 5.39835 5.45744 5.50739 5.53889 5.56141 5.57426 5.64382 5.65505 5.71984 5.85722 5.85969 5.87012 5.96029 6.00410 6.18184 6.31418 6.36610 6.44874 6.46533 6.67256 6.76008 6.91707 6.96258 6.96353 7.19387 7.21464 7.91986 8.05353 8.55640 8.66333 9.13998 9.82913 10.22339 11.18010 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.002802 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.429405 B = 9989.391269 C =11399.707135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.063 3.937 6 O -0.379 6.379 7 C 0.063 3.937 8 C -0.099 4.099 9 C -0.138 4.138 10 C 0.523 3.477 11 O -0.554 6.554 12 N -0.587 5.587 13 C 0.130 3.870 14 C -0.168 4.168 15 C 0.164 3.836 16 N -0.594 5.594 17 C -0.350 4.350 18 H 0.053 0.947 19 C -0.020 4.020 20 N -0.915 5.915 21 Si 1.054 2.946 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.137 3.863 26 C 0.088 3.912 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.031 0.969 48 H 0.267 0.733 49 H 0.035 0.965 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -9.525 -9.461 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.299 6.299 7 C -0.014 4.014 8 C -0.137 4.137 9 C -0.178 4.178 10 C 0.312 3.688 11 O -0.433 6.433 12 N -0.318 5.318 13 C 0.008 3.992 14 C -0.209 4.209 15 C 0.036 3.964 16 N -0.316 5.316 17 C -0.479 4.479 18 H 0.071 0.929 19 C -0.222 4.222 20 N -0.555 5.555 21 Si 0.884 3.116 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.011 3.989 26 C -0.038 4.038 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.079 0.921 49 H 0.053 0.947 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.047 -10.712 -9.528 18.099 hybrid contribution -0.704 0.894 0.488 1.238 sum -11.752 -9.819 -9.041 17.783 Atomic orbital electron populations 1.21736 0.93758 1.02082 1.03294 1.22455 0.95728 0.84003 0.99861 1.87979 1.20631 1.26067 1.95366 1.22524 0.82081 0.95842 1.00765 1.22486 0.98404 0.92422 0.88037 1.87945 1.81032 1.23323 1.37551 1.22540 0.99244 0.81580 0.98030 1.21170 1.02668 0.93585 0.96276 1.21581 1.03874 0.96471 0.95837 1.20404 0.78492 0.81467 0.88459 1.90632 1.43649 1.56670 1.52320 1.47363 1.56316 1.09457 1.18710 1.20544 0.96747 0.98150 0.83739 1.21831 0.98122 1.03375 0.97588 1.20284 0.91827 0.91565 0.92707 1.43677 1.33510 1.53563 1.00899 1.19911 0.97677 1.28603 1.01711 0.92908 1.25709 0.95685 1.03517 0.97281 1.70824 1.39847 1.08898 1.35965 0.83681 0.76128 0.76119 0.75678 1.21107 1.22013 1.21982 1.22172 0.90185 1.00530 0.86052 1.21995 0.95777 0.93826 0.92193 0.91944 0.91231 0.91633 0.93673 0.93379 0.91999 0.92340 0.92586 0.91693 0.93387 0.92971 0.90344 0.90680 0.89335 0.88083 0.90404 0.92263 0.91226 0.92682 0.93524 0.95100 0.92145 0.94715 0.91277 0.91270 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.38 -4.56 10.31 -40.09 -0.41 -4.97 16 4 C 0.06 0.64 6.32 37.16 0.23 0.88 16 5 C 0.06 0.69 6.32 37.16 0.23 0.92 16 6 O -0.38 -5.48 10.31 -40.09 -0.41 -5.89 16 7 C 0.06 0.83 5.94 37.16 0.22 1.05 16 8 C -0.10 -1.53 4.87 -26.73 -0.13 -1.66 16 9 C -0.14 -2.14 4.25 -27.89 -0.12 -2.26 16 10 C 0.52 9.88 7.67 -10.99 -0.08 9.80 16 11 O -0.55 -12.11 15.42 5.56 0.09 -12.02 16 12 N -0.59 -10.49 2.46 -176.48 -0.43 -10.92 16 13 C 0.13 2.20 5.70 -5.91 -0.03 2.17 16 14 C -0.17 -3.11 5.64 -29.13 -0.16 -3.27 16 15 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 16 N -0.59 -14.03 2.38 -171.82 -0.41 -14.44 16 17 C -0.35 -9.51 9.12 -15.06 -0.14 -9.65 16 18 H 0.05 1.50 7.96 -52.49 -0.42 1.08 16 19 C -0.02 -0.55 4.60 -17.43 -0.08 -0.63 16 20 N -0.92 -26.21 12.63 55.49 0.70 -25.51 16 21 Si 1.05 25.16 29.99 -169.99 -5.10 20.06 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.14 2.89 5.09 -1.60 -0.01 2.88 16 26 C 0.09 1.45 5.05 -4.43 -0.02 1.43 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 39 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.09 1.11 7.37 -51.93 -0.38 0.73 16 41 H 0.10 1.67 7.34 -51.93 -0.38 1.29 16 42 H 0.08 1.36 7.13 -51.93 -0.37 0.99 16 43 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 44 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 47 H 0.03 0.57 7.59 -51.93 -0.39 0.17 16 48 H 0.27 7.64 6.37 -40.82 -0.26 7.38 16 49 H 0.04 0.76 7.11 -51.93 -0.37 0.39 16 50 H 0.07 1.62 6.22 -51.93 -0.32 1.30 16 51 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 52 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -33.27 407.02 -8.92 -42.19 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -9.59 Total: 0.45 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 0.51 Total: 4.93 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.14 Total: -50.88 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.74 Total: -22.89 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.27 -8.92 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197810414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.046 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds