Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99944 * 2 1 4 4 C 1.50694 * 109.47511 * 270.00024 * 3 2 1 5 5 H 1.08004 * 119.99910 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00113 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99987 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99728 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47066 * 90.00418 * 8 6 4 10 10 H 1.48502 * 109.47083 * 209.99900 * 8 6 4 11 11 H 1.48495 * 109.47497 * 330.00111 * 8 6 4 12 12 C 1.34771 * 120.00069 * 180.02562 * 2 1 3 13 13 S 1.71199 * 120.00294 * 180.02562 * 12 2 1 14 14 N 1.34776 * 119.99923 * 359.97438 * 12 2 1 15 15 C 1.39889 * 120.00097 * 184.12894 * 14 12 2 16 16 C 1.38881 * 120.07184 * 134.77786 * 15 14 12 17 17 C 1.38107 * 119.92997 * 180.02562 * 16 15 14 18 18 C 1.38284 * 120.06980 * 0.02562 * 17 16 15 19 19 S 1.76206 * 119.92471 * 180.02562 * 18 17 16 20 20 N 1.65592 * 107.21944 * 89.99835 * 19 18 17 21 21 O 1.42102 * 106.39767 * 203.53823 * 19 18 17 22 22 O 1.42096 * 106.40220 * 336.45120 * 19 18 17 23 23 C 1.38274 * 120.14391 * 0.26846 * 18 17 16 24 24 C 1.38112 * 120.07446 * 359.45888 * 23 18 17 25 25 H 1.08997 * 109.46933 * 269.99936 * 1 2 3 26 26 H 1.09006 * 109.46829 * 29.99857 * 1 2 3 27 27 H 1.08994 * 109.46946 * 149.99428 * 1 2 3 28 28 H 1.09000 * 109.46922 * 30.00375 * 3 2 1 29 29 H 1.08999 * 109.47025 * 149.99832 * 3 2 1 30 30 H 0.97000 * 119.99928 * 180.02562 * 7 6 4 31 31 H 0.96997 * 119.99855 * 4.13666 * 14 12 2 32 32 H 1.08001 * 120.03204 * 359.97438 * 16 15 14 33 33 H 1.08005 * 119.96614 * 179.97438 * 17 16 15 34 34 H 0.97004 * 120.00075 * 269.99328 * 20 19 18 35 35 H 0.97001 * 120.00349 * 89.99474 * 20 19 18 36 36 H 1.08004 * 119.96363 * 179.70586 * 23 18 17 37 37 H 1.07999 * 120.04138 * 180.24875 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0963 -2.2417 6 6 3.1261 2.8781 -1.6726 7 7 3.5533 3.6181 -0.6730 8 14 3.4380 3.4170 -3.4338 9 1 2.3078 4.2593 -3.9013 10 1 4.6980 4.2005 -3.4959 11 1 3.5562 2.2198 -4.3043 12 6 2.1389 -1.1671 -0.0005 13 16 3.8509 -1.1672 0.0001 14 7 1.4650 -2.3343 -0.0005 15 6 2.1618 -3.5443 0.0862 16 6 1.7233 -4.5395 0.9500 17 6 2.4137 -5.7327 1.0336 18 6 3.5408 -5.9368 0.2588 19 16 4.4183 -7.4609 0.3681 20 7 3.7613 -8.4864 -0.7539 21 8 5.7453 -7.1915 -0.0630 22 8 4.1115 -8.0101 1.6422 23 6 3.9834 -4.9457 -0.5977 24 6 3.2944 -3.7523 -0.6903 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5139 30 1 4.0295 4.4444 -0.8502 31 1 0.4969 -2.3354 -0.0607 32 1 0.8438 -4.3801 1.5562 33 1 2.0735 -6.5068 1.7055 34 1 3.0197 -9.0620 -0.5094 35 1 4.1179 -8.5116 -1.6556 36 1 4.8668 -5.1064 -1.1980 37 1 3.6383 -2.9801 -1.3624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199074240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = -14.107040 kcal Electronic energy + Delta-G solvation = -22970.928040 eV Core-core repulsion = 19388.160742 eV Total energy + Delta-G solvation = -3582.767298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16415 -38.33879 -37.34142 -35.98724 -35.39216 -33.45946 -32.74779 -31.15055 -30.08017 -28.43447 -27.04205 -24.05652 -23.18581 -22.38511 -21.10302 -19.74198 -18.48093 -18.01576 -17.71297 -17.60021 -17.13885 -16.70955 -15.66537 -15.55336 -14.79521 -14.71394 -14.45989 -14.30623 -13.87715 -13.56800 -13.31990 -13.19706 -12.45114 -12.39955 -12.33426 -12.22719 -12.17945 -12.15344 -11.51673 -11.35455 -11.25334 -11.01495 -10.80087 -10.59007 -10.48317 -10.24904 -10.09691 -9.37985 -9.09396 -8.55170 -8.33924 -7.10688 -6.39302 -6.16096 -4.21207 0.27432 0.67020 1.34449 1.89493 2.39924 2.96924 3.10045 3.23907 3.32751 3.36186 3.47301 3.59185 3.75390 4.20753 4.35754 4.72730 4.82140 4.93150 5.19744 5.22004 5.30990 5.34204 5.48830 5.63947 5.68667 5.77022 5.88804 6.11853 6.14912 6.39026 6.48784 6.80743 6.88342 6.95472 7.27354 7.32654 7.72043 7.76973 7.99837 8.76875 9.42474 10.92512 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002886 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.514882 B = 9700.573192 C =10341.740698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.532 5.532 3 C 0.234 3.766 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.902 3.098 9 H -0.282 1.282 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.545 3.455 13 S -0.617 6.617 14 N -0.659 5.659 15 C 0.203 3.797 16 C -0.155 4.155 17 C -0.020 4.020 18 C -0.687 4.687 19 S 2.707 3.293 20 N -1.246 6.246 21 O -0.958 6.958 22 O -0.963 6.963 23 C -0.018 4.018 24 C -0.092 4.092 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.418 0.582 35 H 0.420 0.580 36 H 0.142 0.858 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -20.998 0.032 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.234 5.234 3 C 0.116 3.884 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.208 1.208 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.188 3.812 13 S -0.482 6.482 14 N -0.290 5.290 15 C 0.108 3.892 16 C -0.177 4.177 17 C -0.041 4.041 18 C -0.776 4.776 19 S 2.794 3.206 20 N -0.916 5.916 21 O -0.948 6.948 22 O -0.953 6.953 23 C -0.040 4.040 24 C -0.116 4.116 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.160 0.840 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.533 -20.586 0.809 21.936 hybrid contribution -2.068 0.907 -1.466 2.692 sum -9.601 -19.679 -0.657 21.906 Atomic orbital electron populations 1.22045 0.80735 1.03825 1.02112 1.47877 1.06331 1.06644 1.62572 1.20095 0.94009 0.74801 0.99495 1.21074 1.37862 1.06502 0.90894 0.92499 1.24839 0.94851 0.96179 0.97605 1.69909 1.37653 1.14220 1.30832 0.86437 0.77751 0.78611 0.84279 1.20779 1.20877 1.19783 1.22350 0.95824 0.81095 0.81952 1.93230 0.89158 1.92572 1.73202 1.42421 1.09480 1.02952 1.74178 1.17707 0.93847 0.83742 0.93927 1.20972 1.02814 0.94711 0.99195 1.20516 0.91700 0.96873 0.95039 1.30805 1.13028 1.22556 1.11170 1.01388 0.73386 0.73021 0.72790 1.53396 1.51869 1.57590 1.28791 1.93615 1.33655 1.85340 1.82161 1.93589 1.85215 1.77682 1.38847 1.20738 0.97550 0.91174 0.94539 1.21858 0.93988 0.96610 0.99123 0.91693 0.88523 0.92264 0.94091 0.90172 0.92454 0.75743 0.85222 0.84259 0.75358 0.75179 0.84008 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.24 59.85 0.61 1.37 16 2 N -0.53 -9.97 2.86 -185.00 -0.53 -10.50 16 3 C 0.23 5.61 4.92 -5.20 -0.03 5.58 16 4 C -0.52 -13.84 9.39 -34.44 -0.32 -14.17 16 5 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 6 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 7 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.54 10.29 7.56 -86.92 -0.66 9.63 16 13 S -0.62 -14.49 24.22 -107.50 -2.60 -17.09 16 14 N -0.66 -9.24 5.19 -11.40 -0.06 -9.30 16 15 C 0.20 2.84 5.94 -83.70 -0.50 2.34 16 16 C -0.15 -1.74 9.97 -39.39 -0.39 -2.13 16 17 C -0.02 -0.22 9.51 -39.61 -0.38 -0.59 16 18 C -0.69 -7.72 5.98 -39.55 -0.24 -7.96 16 19 S 2.71 26.43 6.28 -107.50 -0.68 25.75 16 20 N -1.25 -6.35 9.52 60.35 0.57 -5.77 16 21 O -0.96 -12.70 17.27 -57.17 -0.99 -13.69 16 22 O -0.96 -11.90 17.28 -57.17 -0.99 -12.88 16 23 C -0.02 -0.23 9.51 -39.61 -0.38 -0.61 16 24 C -0.09 -1.39 7.87 -39.39 -0.31 -1.70 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 27 H 0.06 0.57 6.30 -51.93 -0.33 0.24 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.40 4.14 6.52 -40.82 -0.27 3.87 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.14 7.61 -52.48 -0.40 0.74 16 34 H 0.42 1.25 8.96 -34.47 -0.31 0.95 16 35 H 0.42 1.45 8.96 -34.47 -0.31 1.14 16 36 H 0.14 1.65 7.60 -52.48 -0.40 1.25 16 37 H 0.16 2.82 6.08 -43.99 -0.27 2.55 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -37.68 340.20 -10.95 -48.63 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.85 Total: 4.63 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.68 Total: -6.47 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.72 Total: -50.20 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.98 Total: -26.57 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 11.94 SS G_CDS: -3.28 Total: 8.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.68 -10.95 -48.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199074240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.524 kcal (2) G-P(sol) polarization free energy of solvation -37.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds