Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46941 * 2 1 4 4 C 1.50702 * 109.47176 * 119.99854 * 2 1 3 5 5 H 1.08001 * 120.00340 * 119.99558 * 4 2 1 6 6 C 1.37874 * 120.00067 * 299.99776 * 4 2 1 7 7 N 1.31521 * 120.00017 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00247 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47113 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.47232 * 300.00581 * 8 6 4 11 11 H 1.48507 * 109.46621 * 60.00191 * 8 6 4 12 12 N 1.46499 * 109.47139 * 239.99884 * 2 1 3 13 13 C 1.34770 * 120.00347 * 84.99962 * 12 2 1 14 14 S 1.71205 * 119.99749 * 359.97438 * 13 12 2 15 15 N 1.34772 * 120.00365 * 180.02562 * 13 12 2 16 16 C 1.39893 * 120.00045 * 175.77183 * 15 13 12 17 17 C 1.38889 * 120.06989 * 225.17727 * 16 15 13 18 18 C 1.38108 * 119.92572 * 179.72188 * 17 16 15 19 19 C 1.38284 * 120.07279 * 0.52944 * 18 17 16 20 20 S 1.76198 * 119.92731 * 179.74784 * 19 18 17 21 21 N 1.65599 * 107.21518 * 270.01934 * 20 19 18 22 22 O 1.42096 * 106.40496 * 23.56365 * 20 19 18 23 23 O 1.42096 * 106.40089 * 156.48374 * 20 19 18 24 24 C 1.38284 * 120.14294 * 359.76416 * 19 18 17 25 25 C 1.38105 * 120.07041 * 359.96227 * 24 19 18 26 26 H 1.09004 * 109.46598 * 300.00157 * 1 2 3 27 27 H 1.08994 * 109.47346 * 60.00006 * 1 2 3 28 28 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99791 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99636 * 265.00610 * 12 2 1 31 31 H 0.97000 * 120.00076 * 355.75987 * 15 13 12 32 32 H 1.07997 * 120.03355 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.96405 * 180.27438 * 18 17 16 34 34 H 0.96999 * 119.99878 * 150.00176 * 21 20 19 35 35 H 0.96997 * 120.00648 * 329.99795 * 21 20 19 36 36 H 1.08004 * 119.96653 * 179.97438 * 24 19 18 37 37 H 1.08008 * 120.03561 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 1.8270 -0.4197 5.2205 10 1 1.8260 -2.5200 4.0078 11 1 3.8065 -1.1208 4.0081 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 16 1.7393 1.6426 -2.4342 15 7 2.5958 -0.6539 -3.4576 16 6 2.6458 0.0196 -4.6827 17 6 2.1854 -0.6005 -5.8371 18 6 2.2308 0.0693 -7.0440 19 6 2.7441 1.3519 -7.1058 20 16 2.8063 2.2004 -8.6488 21 7 4.2665 1.8457 -9.3446 22 8 1.8136 1.6062 -9.4739 23 8 2.8341 3.5878 -8.3429 24 6 3.2088 1.9699 -5.9594 25 6 3.1610 1.3077 -4.7484 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7082 1.1610 3.4844 30 1 2.2489 -1.6318 -1.1525 31 1 2.8843 -1.5782 -3.4002 32 1 1.7886 -1.6038 -5.7902 33 1 1.8689 -0.4107 -7.9412 34 1 4.3509 1.8238 -10.3107 35 1 5.0376 1.6598 -8.7863 36 1 3.6095 2.9715 -6.0110 37 1 3.5246 1.7907 -3.8534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199236294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = -25.950865 kcal Electronic energy + Delta-G solvation = -22755.540596 eV Core-core repulsion = 19172.259712 eV Total energy + Delta-G solvation = -3583.280885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.065 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.15380 -38.10804 -37.28715 -35.96657 -35.63225 -33.44530 -32.99203 -31.23556 -30.40517 -28.69975 -25.55374 -24.37491 -23.21968 -22.38894 -21.14437 -19.74817 -18.64955 -18.51066 -18.04136 -17.56900 -16.60451 -16.17297 -15.84670 -15.64076 -15.03019 -14.99172 -14.55310 -14.12009 -13.72307 -13.52059 -13.29655 -13.05753 -12.71653 -12.35140 -12.21883 -12.11240 -11.95445 -11.53882 -11.24090 -11.13514 -11.08223 -10.94916 -10.74346 -10.68460 -10.49518 -10.39889 -9.75859 -9.31186 -9.17827 -8.78182 -8.41451 -7.32631 -6.59907 -6.29986 -4.42785 0.22190 0.57700 1.26228 1.80239 2.29378 2.83376 3.00211 3.13528 3.20123 3.20738 3.33144 3.63641 3.93340 4.22429 4.33741 4.71773 4.75717 5.02319 5.14349 5.27870 5.41611 5.68577 5.71094 5.80946 6.03156 6.12566 6.32470 6.44427 6.70699 6.73747 6.75193 6.88846 6.93518 7.21656 7.35775 7.43660 7.68911 7.93861 8.08203 8.58212 9.23845 10.75074 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.036848 B = 0.002434 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.687275 B =11502.200082 C =11696.574699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.085 0.915 4 C -0.550 4.550 5 H 0.060 0.940 6 C 0.073 3.927 7 N -0.873 5.873 8 Si 0.905 3.095 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.275 1.275 12 N -0.634 5.634 13 C 0.546 3.454 14 S -0.632 6.632 15 N -0.658 5.658 16 C 0.206 3.794 17 C -0.154 4.154 18 C -0.015 4.015 19 C -0.682 4.682 20 S 2.704 3.296 21 N -1.250 6.250 22 O -0.968 6.968 23 O -0.961 6.961 24 C -0.018 4.018 25 C -0.092 4.092 26 H 0.098 0.902 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.269 0.731 30 H 0.390 0.610 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.419 0.581 35 H 0.417 0.583 36 H 0.145 0.855 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -5.232 -20.005 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.102 0.898 4 C -0.589 4.589 5 H 0.078 0.922 6 C -0.132 4.132 7 N -0.509 5.509 8 Si 0.732 3.268 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.254 5.254 13 C 0.185 3.815 14 S -0.500 6.500 15 N -0.288 5.288 16 C 0.110 3.890 17 C -0.176 4.176 18 C -0.036 4.036 19 C -0.772 4.772 20 S 2.793 3.207 21 N -0.924 5.924 22 O -0.957 6.957 23 O -0.950 6.950 24 C -0.040 4.040 25 C -0.116 4.116 26 H 0.117 0.883 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.243 0.757 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.248 0.752 35 H 0.244 0.756 36 H 0.162 0.838 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.804 -3.316 -19.874 21.267 hybrid contribution 1.200 -2.926 1.516 3.507 sum 8.004 -6.242 -18.358 20.977 Atomic orbital electron populations 1.22064 0.96837 0.99176 1.02512 1.19551 0.92212 0.95419 0.77035 0.89767 1.21040 1.33920 1.13807 0.90091 0.92213 1.24833 0.94536 0.94862 0.98986 1.69890 1.34681 1.21814 1.24488 0.86446 0.79191 0.79504 0.81620 1.20828 1.20138 1.20080 1.46279 1.57334 1.12967 1.08791 1.22447 0.81712 0.95608 0.81705 1.93286 1.71754 0.93947 1.91050 1.42299 1.65025 1.15355 1.06073 1.17715 0.94588 0.93304 0.83383 1.21007 1.02881 1.01642 0.92072 1.20552 0.93323 0.91651 0.98050 1.30460 1.17974 1.08673 1.20059 1.01415 0.72346 0.73815 0.73098 1.53180 1.29165 1.91745 1.18270 1.93582 1.57004 1.78297 1.66866 1.93618 1.85774 1.31011 1.84630 1.20800 0.93851 0.98926 0.90436 1.21830 0.97176 0.93604 0.98993 0.88347 0.94978 0.95807 0.92089 0.77470 0.75672 0.85004 0.84028 0.75179 0.75623 0.83780 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.21 37.16 0.34 -3.09 16 2 C 0.26 5.98 2.32 -69.08 -0.16 5.82 16 3 H 0.08 2.27 6.82 -51.93 -0.35 1.91 16 4 C -0.55 -13.52 8.73 -34.44 -0.30 -13.82 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.87 -23.42 11.32 55.43 0.63 -22.80 16 8 Si 0.91 19.60 29.54 -169.99 -5.02 14.58 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 N -0.63 -11.50 5.07 -56.65 -0.29 -11.79 16 13 C 0.55 9.55 7.81 -86.93 -0.68 8.87 16 14 S -0.63 -13.70 23.65 -107.50 -2.54 -16.24 16 15 N -0.66 -8.40 5.32 -11.40 -0.06 -8.46 16 16 C 0.21 2.64 5.93 -83.70 -0.50 2.15 16 17 C -0.15 -1.63 9.97 -39.39 -0.39 -2.02 16 18 C -0.01 -0.15 9.51 -39.61 -0.38 -0.53 16 19 C -0.68 -7.22 5.98 -39.55 -0.24 -7.45 16 20 S 2.70 25.92 6.28 -107.50 -0.68 25.24 16 21 N -1.25 -6.26 9.52 60.35 0.57 -5.69 16 22 O -0.97 -11.92 17.28 -57.18 -0.99 -12.90 16 23 O -0.96 -12.72 17.28 -57.18 -0.99 -13.70 16 24 C -0.02 -0.22 9.51 -39.61 -0.38 -0.59 16 25 C -0.09 -1.27 7.87 -39.39 -0.31 -1.58 16 26 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 27 H 0.03 0.74 7.48 -51.93 -0.39 0.35 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 5.83 8.56 -40.82 -0.35 5.48 16 31 H 0.41 3.64 8.84 -40.82 -0.36 3.28 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.14 7.61 -52.49 -0.40 0.74 16 34 H 0.42 1.37 8.96 -34.47 -0.31 1.06 16 35 H 0.42 1.20 8.96 -34.47 -0.31 0.89 16 36 H 0.14 1.52 7.61 -52.48 -0.40 1.12 16 37 H 0.16 2.53 6.11 -44.73 -0.27 2.26 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -35.12 338.00 -11.19 -46.31 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.84 Total: 10.85 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.08 Total: -10.49 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.85 Total: -48.74 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.98 Total: -26.61 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 12.22 SS G_CDS: -3.22 Total: 9.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.12 -11.19 -46.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199236294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.362 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds