Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46938 * 2 1 4 4 C 1.35701 * 117.00091 * 183.28345 * 3 2 1 5 5 C 1.39032 * 119.90565 * 5.02673 * 4 3 2 6 6 C 1.37659 * 120.09656 * 179.97438 * 5 4 3 7 7 C 1.39815 * 119.90114 * 0.02562 * 6 5 4 8 8 C 1.47473 * 120.09187 * 179.97438 * 7 6 5 9 9 O 1.21501 * 120.00319 * 180.02562 * 8 7 6 10 10 O 1.34749 * 119.99530 * 0.02562 * 8 7 6 11 11 C 1.45208 * 116.99553 * 180.02562 * 10 8 7 12 12 C 1.39778 * 119.81728 * 359.71296 * 7 6 5 13 13 C 1.37702 * 119.90092 * 0.53367 * 12 7 6 14 14 S 1.76199 * 119.94679 * 179.75513 * 13 12 7 15 15 O 1.42105 * 106.39850 * 131.53437 * 14 13 12 16 16 O 1.42098 * 106.40568 * 358.61215 * 14 13 12 17 17 N 1.65598 * 107.21778 * 245.06810 * 14 13 12 18 18 C 1.36945 * 119.99875 * 64.66520 * 17 14 13 19 19 H 1.08001 * 119.99946 * 5.09170 * 18 17 14 20 20 C 1.38814 * 120.00065 * 185.09577 * 18 17 14 21 21 N 1.31617 * 119.99900 * 354.84428 * 20 18 17 22 22 Si 1.86798 * 119.99939 * 174.84427 * 20 18 17 23 23 H 1.48503 * 109.47181 * 4.99788 * 22 20 18 24 24 H 1.48497 * 109.47214 * 124.99904 * 22 20 18 25 25 H 1.48504 * 109.47218 * 245.00231 * 22 20 18 26 26 H 1.08990 * 109.47393 * 64.95087 * 1 2 3 27 27 H 1.09000 * 109.46984 * 184.95348 * 1 2 3 28 28 H 1.09006 * 109.46954 * 304.94881 * 1 2 3 29 29 H 1.08998 * 109.47086 * 240.00540 * 2 1 3 30 30 H 1.08999 * 109.47592 * 119.99707 * 2 1 3 31 31 H 1.08003 * 119.95638 * 0.02562 * 5 4 3 32 32 H 1.07998 * 120.05195 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46841 * 180.02562 * 11 10 8 34 34 H 1.09004 * 109.46697 * 299.99191 * 11 10 8 35 35 H 1.08992 * 109.47263 * 59.99842 * 11 10 8 36 36 H 1.08000 * 120.04874 * 180.29251 * 12 7 6 37 37 H 0.96998 * 120.00851 * 244.66589 * 17 14 13 38 38 H 0.96999 * 120.00052 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5258 -0.0693 5 6 4.1868 0.4291 -0.2413 6 6 5.5501 0.6058 -0.3126 7 6 6.0928 1.8903 -0.2112 8 6 7.5527 2.0843 -0.2864 9 8 8.0226 3.2013 -0.1977 10 8 8.3656 1.0227 -0.4537 11 6 9.7918 1.2884 -0.5184 12 6 5.2473 2.9907 -0.0438 13 6 3.8850 2.8045 0.0316 14 16 2.8185 4.1902 0.2491 15 8 1.7885 4.0598 -0.7212 16 8 3.6586 5.3325 0.3422 17 7 2.0920 4.0222 1.7277 18 6 2.8462 4.0647 2.8699 19 1 3.9010 4.2895 2.8125 20 6 2.2549 3.8188 4.1016 21 7 0.9528 3.6453 4.1836 22 14 3.3074 3.7342 5.6426 23 1 4.7110 4.0805 5.3030 24 1 2.7899 4.6959 6.6488 25 1 3.2581 2.3590 6.2008 26 1 -0.3633 0.4351 -0.9309 27 1 -0.3633 -1.0238 0.0887 28 1 -0.3633 0.5887 0.8424 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7668 -0.5628 -0.3199 32 1 6.1996 -0.2466 -0.4466 33 1 10.3301 0.3504 -0.6549 34 1 10.0000 1.9518 -1.3579 35 1 10.1156 1.7621 0.4082 36 1 5.6621 3.9852 0.0302 37 1 1.1322 3.8938 1.7848 38 1 0.5396 3.4739 5.0442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201549131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = -168.717440 kcal Electronic energy + Delta-G solvation = -26642.081272 eV Core-core repulsion = 22577.563942 eV Total energy + Delta-G solvation = -4064.517330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57382 -39.82044 -37.42183 -36.28077 -35.90100 -34.62551 -34.59534 -32.11707 -31.02396 -30.95562 -30.13621 -27.63950 -24.56609 -24.24168 -23.57891 -22.22800 -20.77322 -18.97268 -18.20060 -18.00087 -17.67107 -17.06639 -16.45435 -16.31866 -15.99317 -15.72203 -15.45243 -14.60172 -14.36214 -14.17446 -13.96939 -13.64311 -13.58456 -13.31512 -13.09658 -12.81178 -12.38880 -12.23863 -11.98697 -11.86223 -11.72475 -11.35523 -11.26097 -11.02595 -10.92244 -10.85484 -10.80530 -10.68811 -10.52783 -10.51996 -10.29989 -9.94536 -9.87381 -9.20955 -8.34219 -8.26289 -6.51389 -3.90443 0.81767 1.19238 1.65129 2.56055 2.68543 3.15585 3.17494 3.22486 3.27633 3.70326 4.06431 4.48318 4.68630 4.75294 4.81916 4.86945 4.97202 4.99911 5.05895 5.07976 5.13969 5.20159 5.26087 5.36701 5.55995 5.69196 5.73114 5.84823 5.90654 6.09055 6.16691 6.23967 6.27643 6.38695 6.70684 7.08411 7.33553 7.46534 7.79262 8.67553 8.78264 9.24210 10.63884 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.005430 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.674081 B = 5155.773276 C = 6211.685953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.052 3.948 3 O -0.290 6.290 4 C 0.265 3.735 5 C -0.247 4.247 6 C 0.012 3.988 7 C -0.199 4.199 8 C 0.515 3.485 9 O -0.506 6.506 10 O -0.360 6.360 11 C 0.037 3.963 12 C 0.077 3.923 13 C -0.701 4.701 14 S 2.607 3.393 15 O -0.991 6.991 16 O -0.974 6.974 17 N -0.937 5.937 18 C -0.268 4.268 19 H 0.105 0.895 20 C 0.034 3.966 21 N -0.869 5.869 22 Si 0.917 3.083 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.279 1.279 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.158 0.842 37 H 0.412 0.588 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -12.054 -6.454 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 O -0.201 6.201 4 C 0.215 3.785 5 C -0.267 4.267 6 C -0.006 4.006 7 C -0.201 4.201 8 C 0.361 3.639 9 O -0.395 6.395 10 O -0.277 6.277 11 C -0.057 4.057 12 C 0.057 3.943 13 C -0.780 4.780 14 S 2.696 3.304 15 O -0.980 6.980 16 O -0.964 6.964 17 N -0.689 5.689 18 C -0.410 4.410 19 H 0.123 0.877 20 C -0.175 4.175 21 N -0.510 5.510 22 Si 0.743 3.257 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.205 1.205 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.175 0.825 37 H 0.248 0.752 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.792 -10.985 -7.114 14.745 hybrid contribution 0.751 -1.204 1.055 1.769 sum 7.543 -12.189 -6.059 15.562 Atomic orbital electron populations 1.21795 0.92220 1.02693 1.04460 1.22939 0.96661 0.81176 1.01448 1.86221 1.18227 1.30237 1.85400 1.18632 0.82653 0.92608 0.84608 1.21247 0.94211 0.98598 1.12607 1.21272 0.94502 0.96039 0.88820 1.18998 0.89004 0.95324 1.16758 1.21074 0.87679 0.82465 0.72719 1.90854 1.77167 1.25135 1.46386 1.86530 1.19681 1.37625 1.83879 1.23243 0.76858 1.02912 1.02652 1.20922 0.90131 0.99244 0.83961 1.31441 1.09528 1.17532 1.19450 1.07064 0.72962 0.76396 0.73983 1.93425 1.56181 1.87398 1.60992 1.93466 1.68887 1.46911 1.87119 1.51670 1.16136 1.82184 1.18938 1.19441 0.94813 1.42746 0.83967 0.87689 1.25270 0.95976 0.96852 0.99389 1.69722 1.09037 1.45693 1.26593 0.86004 0.80326 0.78086 0.81283 1.18894 1.20410 1.20537 0.91300 0.90519 0.90461 0.91817 0.91384 0.84349 0.84203 0.88203 0.91896 0.91802 0.82451 0.75152 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 37.16 0.38 -1.42 16 2 C 0.05 0.68 5.50 37.16 0.20 0.88 16 3 O -0.29 -5.25 8.88 -29.22 -0.26 -5.51 16 4 C 0.26 4.84 6.64 -39.01 -0.26 4.58 16 5 C -0.25 -3.58 9.04 -39.50 -0.36 -3.94 16 6 C 0.01 0.17 9.61 -39.20 -0.38 -0.21 16 7 C -0.20 -3.33 5.87 -104.97 -0.62 -3.95 16 8 C 0.51 8.36 7.89 34.49 0.27 8.63 16 9 O -0.51 -9.48 16.13 -19.27 -0.31 -9.79 16 10 O -0.36 -4.70 9.81 -40.63 -0.40 -5.10 16 11 C 0.04 0.35 10.57 101.05 1.07 1.42 16 12 C 0.08 1.48 9.09 -39.20 -0.36 1.13 16 13 C -0.70 -14.40 5.82 -39.50 -0.23 -14.63 16 14 S 2.61 60.88 5.28 -107.50 -0.57 60.31 16 15 O -0.99 -24.38 17.27 -62.68 -1.08 -25.46 16 16 O -0.97 -24.67 16.65 -57.17 -0.95 -25.62 16 17 N -0.94 -22.98 5.74 31.50 0.18 -22.80 16 18 C -0.27 -6.83 9.63 -15.05 -0.15 -6.97 16 19 H 0.11 2.61 7.80 -52.49 -0.41 2.20 16 20 C 0.03 0.84 5.50 -17.43 -0.10 0.75 16 21 N -0.87 -22.49 13.07 55.49 0.73 -21.76 16 22 Si 0.92 19.58 29.56 -169.99 -5.02 14.56 16 23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.66 7.22 -51.93 -0.38 0.28 16 30 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 31 H 0.14 1.50 6.26 -52.48 -0.33 1.17 16 32 H 0.14 1.49 7.60 -52.49 -0.40 1.09 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.16 3.14 6.91 -52.49 -0.36 2.77 16 37 H 0.41 10.20 8.04 -34.48 -0.28 9.93 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -32.73 348.17 -7.19 -39.92 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.24 Total: 9.73 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.51 Total: -13.73 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.91 Total: -44.56 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -3.00 Total: -71.48 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 60.88 SS G_CDS: -0.57 Total: 60.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.73 -7.19 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201549131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.793 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds