Wall clock time and date at job start Tue Mar 31 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46912 * 2 1 4 4 C 1.42899 * 114.00136 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47446 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46711 * 65.00163 * 5 4 3 7 7 C 1.42897 * 113.99769 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47270 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47521 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47009 * 180.02562 * 9 8 7 11 11 O 1.21274 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63144 * 179.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.55709 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 N 1.46498 * 109.44278 * 181.23594 * 15 14 13 17 17 C 1.36936 * 119.99742 * 84.79956 * 16 15 14 18 18 H 1.07997 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00172 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47363 * 89.99819 * 21 19 17 23 23 H 1.48492 * 109.47353 * 209.99911 * 21 19 17 24 24 H 1.48500 * 109.47139 * 330.00007 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 26 26 C 1.46928 * 120.62874 * 0.02562 * 12 10 9 27 27 H 1.08994 * 109.47278 * 300.00228 * 1 2 3 28 28 H 1.08996 * 109.47043 * 60.00280 * 1 2 3 29 29 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47278 * 239.99772 * 2 1 3 31 31 H 1.09004 * 109.47237 * 119.99490 * 2 1 3 32 32 H 1.09007 * 109.47032 * 59.99647 * 4 3 2 33 33 H 1.09000 * 109.47358 * 299.99887 * 4 3 2 34 34 H 1.09005 * 109.47260 * 305.00456 * 5 4 3 35 35 H 1.08996 * 109.47346 * 184.99974 * 5 4 3 36 36 H 1.09004 * 109.47718 * 60.00226 * 7 6 5 37 37 H 1.08998 * 109.47443 * 299.99558 * 7 6 5 38 38 H 1.09001 * 109.46994 * 59.99606 * 8 7 6 39 39 H 1.08997 * 109.47336 * 300.00069 * 8 7 6 40 40 H 1.09001 * 109.46917 * 60.00037 * 9 8 7 41 41 H 1.08997 * 109.47262 * 300.00592 * 9 8 7 42 42 H 1.09002 * 109.58751 * 353.41659 * 13 12 10 43 43 H 1.08996 * 109.58750 * 113.69843 * 13 12 10 44 44 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 45 45 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 46 46 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 47 47 H 0.97004 * 120.00020 * 264.79513 * 16 15 14 48 48 H 0.97000 * 120.00375 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.49876 * 178.74890 * 25 15 14 50 50 H 1.09005 * 109.52615 * 58.67140 * 25 15 14 51 51 H 1.08998 * 109.58787 * 246.16207 * 26 12 10 52 52 H 1.09007 * 109.58600 * 6.44520 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3974 3.5461 1.2204 7 6 3.7181 4.9350 1.3218 8 6 3.2151 5.4782 2.6608 9 6 3.5589 6.9650 2.7697 10 6 3.0640 7.4997 4.0889 11 8 2.4922 6.7643 4.8652 12 7 3.2560 8.7957 4.4054 13 6 2.7788 9.3318 5.6874 14 6 1.9051 10.5607 5.4167 15 6 2.6904 11.5624 4.5664 16 7 1.8684 12.7518 4.3304 17 6 1.8372 13.7578 5.2589 18 1 2.4182 13.6742 6.1654 19 6 1.0578 14.8846 5.0354 20 7 0.3493 14.9862 3.9310 21 14 1.0146 16.2566 6.3023 22 1 2.0844 17.2418 6.0018 23 1 -0.3072 16.9316 6.2561 24 1 1.2325 15.6870 7.6564 25 6 3.0584 10.9226 3.2257 26 6 3.9456 9.6995 3.4745 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9769 0.8908 34 1 3.3498 3.4410 -0.8424 35 1 4.9081 3.0255 -0.0892 36 1 3.2400 5.4788 0.5070 37 1 4.7987 5.0639 1.2600 38 1 3.6927 4.9345 3.4760 39 1 2.1345 5.3493 2.7224 40 1 3.0816 7.5089 1.9546 41 1 4.6396 7.0935 2.7083 42 1 2.1919 8.5730 6.2050 43 1 3.6310 9.6180 6.3037 44 1 1.0062 10.2571 4.8801 45 1 1.6254 11.0239 6.3630 46 1 3.6003 11.8487 5.0940 47 1 1.3462 12.8267 3.5163 48 1 -0.1951 15.7737 3.7746 49 1 3.5981 11.6453 2.6137 50 1 2.1502 10.6138 2.7080 51 1 4.8932 10.0180 3.9089 52 1 4.1307 9.1824 2.5329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203330268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:54 Heat of formation + Delta-G solvation = -133.016327 kcal Electronic energy + Delta-G solvation = -27599.726086 eV Core-core repulsion = 23599.221947 eV Total energy + Delta-G solvation = -4000.504139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08889 -38.86727 -37.79387 -37.34610 -34.48491 -33.97264 -32.15752 -31.92808 -30.86603 -29.64291 -29.21654 -26.90152 -24.78189 -23.15771 -23.03755 -22.93654 -22.67996 -21.73143 -20.10487 -18.78428 -17.49246 -17.34150 -17.07635 -16.90956 -16.33985 -16.06347 -15.53904 -15.38610 -15.28036 -14.81941 -14.22901 -13.93108 -13.84142 -13.68883 -13.60991 -13.42604 -13.11395 -13.09118 -12.76564 -12.50936 -12.28930 -12.15779 -11.92415 -11.84974 -11.70185 -11.49052 -11.38841 -11.18218 -11.04507 -10.92187 -10.88385 -10.81462 -10.42293 -10.25159 -9.99251 -9.93773 -9.87929 -9.71681 -9.58405 -8.91613 -8.47206 -6.98944 -5.78985 -3.08079 2.71971 3.00283 3.27021 3.41873 3.42552 3.47568 3.49122 4.46549 4.56488 4.58765 4.65532 4.73022 4.77325 4.80966 4.85874 4.94776 4.96824 5.02047 5.09357 5.09827 5.15941 5.23665 5.24476 5.30592 5.38227 5.38643 5.42592 5.46973 5.54697 5.58962 5.64853 5.77447 5.79935 5.90228 5.95036 5.99069 6.11887 6.21975 6.28878 6.44578 6.55248 6.61171 6.79743 6.92524 6.95053 7.04698 7.54324 7.67733 8.28002 8.39334 9.50660 10.07846 10.42477 11.43590 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.023641 B = 0.001621 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.103503 B =17265.199523 C =17506.771450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.379 6.379 7 C 0.063 3.937 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.607 5.607 13 C 0.112 3.888 14 C -0.149 4.149 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.140 4.140 26 C 0.110 3.890 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.046 -27.078 -10.305 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.298 6.298 7 C -0.014 4.014 8 C -0.140 4.140 9 C -0.177 4.177 10 C 0.302 3.698 11 O -0.425 6.425 12 N -0.341 5.341 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.179 4.179 26 C -0.013 4.013 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.533 -27.259 -9.599 30.431 hybrid contribution 0.080 0.910 0.117 0.921 sum 9.614 -26.348 -9.482 29.607 Atomic orbital electron populations 1.21741 0.93620 1.02189 1.03397 1.22463 0.95844 0.83821 0.99852 1.87987 1.20426 1.26237 1.95360 1.22509 0.82338 0.95649 1.00755 1.22498 0.98194 0.92608 0.88007 1.87962 1.81070 1.23085 1.37685 1.22520 0.98745 0.81959 0.98169 1.21205 1.03416 0.93196 0.96215 1.21571 1.02862 0.96957 0.96320 1.20516 0.79218 0.81629 0.88433 1.90685 1.42769 1.57034 1.51995 1.48193 1.57540 1.08796 1.19561 1.21686 0.98377 0.96806 0.84208 1.22664 0.99045 0.95012 1.02333 1.20168 0.93606 0.87062 0.92309 1.42424 1.53884 1.16565 1.23588 1.19240 1.22458 0.96096 0.99337 0.91158 1.24744 0.99853 0.98629 0.97671 1.69656 1.33045 1.29622 1.25758 0.86202 0.76920 0.82338 0.80798 1.21732 1.21793 1.20754 1.22200 0.99859 0.96153 0.99732 1.21775 0.95547 0.91115 0.92854 0.91589 0.91863 0.91151 0.93624 0.93385 0.91951 0.92422 0.92411 0.91838 0.93143 0.93370 0.90431 0.90200 0.88623 0.88871 0.89727 0.91925 0.92318 0.90734 0.93463 0.78296 0.93506 0.90457 0.91735 0.91248 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.38 -3.81 10.31 -40.09 -0.41 -4.22 16 4 C 0.06 0.48 6.32 37.16 0.23 0.71 16 5 C 0.06 0.49 6.32 37.16 0.23 0.73 16 6 O -0.38 -4.12 10.31 -40.09 -0.41 -4.54 16 7 C 0.06 0.55 5.94 37.16 0.22 0.77 16 8 C -0.10 -1.09 4.87 -26.73 -0.13 -1.23 16 9 C -0.14 -1.34 4.05 -27.88 -0.11 -1.45 16 10 C 0.51 7.24 7.70 -10.98 -0.08 7.15 16 11 O -0.55 -9.76 15.39 5.56 0.09 -9.67 16 12 N -0.61 -8.38 2.98 -172.80 -0.51 -8.89 16 13 C 0.11 1.71 6.43 -3.71 -0.02 1.68 16 14 C -0.15 -2.67 5.67 -26.59 -0.15 -2.82 16 15 C 0.18 3.37 2.73 -67.88 -0.19 3.18 16 16 N -0.72 -17.65 5.12 -53.37 -0.27 -17.93 16 17 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.14 -2.09 5.55 -26.64 -0.15 -2.24 16 26 C 0.11 1.28 6.34 -3.74 -0.02 1.25 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 40 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 41 H 0.09 0.69 7.94 -51.93 -0.41 0.27 16 42 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 47 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 52 H 0.08 0.70 5.93 -51.92 -0.31 0.39 16 LS Contribution 417.51 15.07 6.29 6.29 Total: -1.00 -34.01 417.51 -9.12 -43.13 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -9.80 Total: 5.20 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.22 Total: 0.64 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.06 Total: -54.00 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.74 Total: -18.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.01 -9.12 -43.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203330268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.888 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds