Wall clock time and date at job start Tue Mar 31 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48497 * 109.47422 * 85.00932 * 3 2 1 5 5 H 1.48499 * 109.46986 * 205.00760 * 3 2 1 6 6 H 1.48502 * 109.47269 * 325.00652 * 3 2 1 7 7 C 1.38809 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00189 * 187.32952 * 7 2 1 9 9 N 1.36936 * 120.00090 * 7.33747 * 7 2 1 10 10 C 1.47425 * 125.64977 * 185.52815 * 9 7 2 11 11 C 1.55124 * 104.72444 * 155.81615 * 10 9 7 12 12 C 1.55160 * 101.48722 * 37.29072 * 11 10 9 13 13 H 1.08998 * 110.71894 * 82.69997 * 12 11 10 14 14 O 1.42903 * 110.87199 * 205.90541 * 12 11 10 15 15 C 1.35795 * 116.99859 * 205.06472 * 14 12 11 16 16 N 1.32168 * 120.08366 * 359.97438 * 15 14 12 17 17 N 1.28341 * 122.19980 * 179.97438 * 16 15 14 18 18 C 1.32216 * 122.20625 * 0.02562 * 17 16 15 19 19 O 1.35783 * 120.06767 * 180.02562 * 18 17 16 20 20 C 1.39275 * 119.85910 * 359.97438 * 18 17 16 21 21 C 1.38608 * 117.95532 * 359.75758 * 20 18 17 22 22 Br 1.89103 * 121.02528 * 180.26219 * 21 20 18 23 23 C 1.47019 * 125.64551 * 5.82617 * 9 7 2 24 24 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 25 25 H 1.09007 * 110.36357 * 274.73816 * 10 9 7 26 26 H 1.08993 * 110.36752 * 37.06556 * 10 9 7 27 27 H 1.09004 * 111.19034 * 279.18732 * 11 10 9 28 28 H 1.09001 * 110.94455 * 155.28780 * 11 10 9 29 29 H 0.96703 * 113.99598 * 89.99502 * 19 18 17 30 30 H 1.08001 * 121.02561 * 180.02562 * 20 18 17 31 31 H 1.08997 * 109.88756 * 300.44606 * 23 9 7 32 32 H 1.09007 * 109.88075 * 61.45565 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 1.3947 5 1 3.5964 1.4120 -0.5919 6 1 1.5043 2.6200 -0.8029 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2059 0.1199 9 7 1.3340 -2.3832 -0.1504 10 6 1.9254 -3.7302 -0.0542 11 6 0.7394 -4.6554 0.3248 12 6 -0.4173 -4.0274 -0.4969 13 1 -0.3994 -4.3876 -1.5255 14 8 -1.6811 -4.3016 0.1111 15 6 -2.7698 -4.2959 -0.7005 16 7 -2.6331 -4.0438 -1.9907 17 7 -3.6336 -4.0285 -2.7944 18 6 -4.8690 -4.2634 -2.3861 19 8 -5.8957 -4.2367 -3.2743 20 6 -5.1149 -4.5393 -1.0433 21 6 -4.0339 -4.5615 -0.1760 22 35 -4.2675 -4.9339 1.6632 23 6 -0.1008 -2.5180 -0.4413 24 1 -0.4850 0.8401 -0.0004 25 1 2.3499 -4.0275 -1.0132 26 1 2.6887 -3.7548 0.7235 27 1 0.5294 -4.6091 1.3934 28 1 0.9297 -5.6816 0.0103 29 1 -6.0805 -5.0913 -3.6875 30 1 -6.1165 -4.7343 -0.6894 31 1 -0.6851 -2.0455 0.3483 32 1 -0.3298 -2.0533 -1.4004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226848800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:39 Heat of formation + Delta-G solvation = 26.807721 kcal Electronic energy + Delta-G solvation = -20103.884828 eV Core-core repulsion = 16727.834369 eV Total energy + Delta-G solvation = -3376.050458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43685 -39.07956 -37.54281 -36.28682 -34.01787 -32.39198 -30.92221 -30.24764 -29.01420 -27.57528 -25.12825 -24.20155 -23.83898 -20.67617 -20.35003 -19.16701 -18.33869 -17.98993 -16.92581 -16.33898 -15.62347 -14.86787 -14.69823 -14.39039 -14.04481 -13.98864 -13.04938 -12.96400 -12.50675 -12.32542 -11.99372 -11.98160 -11.84624 -11.58360 -11.09956 -10.84424 -10.76352 -10.48690 -10.18698 -10.09871 -10.01003 -9.88199 -9.68269 -9.52510 -8.79239 -8.62084 -6.86030 -5.70104 -3.07865 0.29413 0.71472 1.15972 2.83215 3.07654 3.35484 3.41372 3.46554 3.49125 3.95675 4.45309 4.48592 4.53714 4.90682 5.07277 5.23846 5.36669 5.49766 5.63658 5.70326 5.76655 6.02910 6.19025 6.36574 6.55658 6.74885 7.04630 7.12486 7.45438 7.64375 7.80129 8.23647 8.47870 9.17724 9.79959 10.43614 11.39303 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004236 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.093303 B = 6607.848320 C = 7132.653699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.135 3.865 11 C -0.125 4.125 12 C 0.054 3.946 13 H 0.090 0.910 14 O -0.269 6.269 15 C 0.300 3.700 16 N -0.253 5.253 17 N -0.201 5.201 18 C 0.216 3.784 19 O -0.467 6.467 20 C -0.073 4.073 21 C -0.106 4.106 22 Br 0.005 6.995 23 C 0.162 3.838 24 H 0.253 0.747 25 H 0.025 0.975 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.401 0.599 30 H 0.168 0.832 31 H 0.073 0.927 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 -15.305 0.405 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.009 3.991 11 C -0.164 4.164 12 C -0.002 4.002 13 H 0.108 0.892 14 O -0.171 6.171 15 C 0.112 3.888 16 N -0.114 5.114 17 N -0.055 5.055 18 C 0.027 3.973 19 O -0.271 6.271 20 C -0.105 4.105 21 C -0.198 4.198 22 Br 0.089 6.911 23 C 0.037 3.963 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.258 0.742 30 H 0.185 0.815 31 H 0.091 0.909 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.024 -14.319 0.327 18.701 hybrid contribution -0.561 0.301 0.402 0.753 sum -12.585 -14.018 0.729 18.853 Atomic orbital electron populations 1.69933 1.04997 1.25154 1.56423 1.24836 0.95656 0.97850 1.01996 0.86095 0.78694 0.83463 0.77472 1.21602 1.20546 1.21618 1.19047 0.90918 0.82378 1.43615 0.90134 1.44315 1.04492 1.00233 1.83885 1.21628 0.93828 0.85623 0.98021 1.22939 0.94325 0.98302 1.00787 1.24153 0.77981 1.00964 0.97109 0.89167 1.86397 1.14519 1.82306 1.33878 1.21242 0.88047 0.89777 0.89685 1.73317 1.21714 1.16135 1.00252 1.72641 0.96495 1.07549 1.28788 1.20550 0.88118 1.00743 0.87868 1.84890 1.46388 1.37535 1.58318 1.22416 0.99959 0.95534 0.92559 1.22233 0.93200 1.09299 0.95085 1.96814 1.97184 1.93157 1.03938 1.21559 0.86488 0.86977 1.01315 0.93679 0.95753 0.93303 0.90211 0.91282 0.74199 0.81471 0.90940 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.64 10.45 55.49 0.58 -27.06 16 2 C -0.01 -0.19 5.45 -17.43 -0.10 -0.29 16 3 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.52 10.26 -15.06 -0.15 -6.68 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.60 3.39 -169.94 -0.58 -16.18 16 10 C 0.14 2.76 7.24 -2.41 -0.02 2.74 16 11 C -0.13 -2.20 6.83 -24.46 -0.17 -2.37 16 12 C 0.05 1.07 3.15 -24.89 -0.08 0.99 16 13 H 0.09 1.73 7.15 -51.93 -0.37 1.36 16 14 O -0.27 -5.01 9.30 -19.10 -0.18 -5.18 16 15 C 0.30 5.16 7.56 -16.97 -0.13 5.03 16 16 N -0.25 -4.61 9.88 30.52 0.30 -4.31 16 17 N -0.20 -3.31 11.51 30.50 0.35 -2.96 16 18 C 0.22 2.76 7.85 -17.00 -0.13 2.63 16 19 O -0.47 -4.61 13.58 -19.06 -0.26 -4.87 16 20 C -0.07 -0.83 9.94 -39.06 -0.39 -1.22 16 21 C -0.11 -1.48 6.30 -39.01 -0.25 -1.73 16 22 Br 0.00 0.06 33.31 -68.01 -2.27 -2.21 16 23 C 0.16 4.07 5.22 -3.06 -0.02 4.05 16 24 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 1.64 9.06 45.56 0.41 2.05 16 30 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.07 2.06 6.80 -51.93 -0.35 1.71 16 32 H 0.04 1.14 7.97 -51.93 -0.41 0.73 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -33.39 299.87 -6.36 -39.75 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -2.39 Total: -2.05 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.42 Total: 3.16 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.66 Total: -50.51 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.44 Total: -10.05 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.27 Total: -2.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.39 -6.36 -39.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226848800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.555 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds