Wall clock time and date at job start Tue Mar 31 2020 04:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47429 * 125.65038 * 359.74937 * 9 7 2 11 11 C 1.54909 * 104.83064 * 204.09025 * 10 9 7 12 12 C 1.55161 * 101.58448 * 322.99113 * 11 10 9 13 13 H 1.08998 * 110.71579 * 277.13946 * 12 11 10 14 14 O 1.42891 * 110.72037 * 153.86691 * 12 11 10 15 15 C 1.35798 * 116.99986 * 150.00176 * 14 12 11 16 16 N 1.32164 * 120.08439 * 359.97438 * 15 14 12 17 17 N 1.28335 * 122.19833 * 179.97438 * 16 15 14 18 18 C 1.32210 * 122.20854 * 359.97438 * 17 16 15 19 19 O 1.35786 * 120.06931 * 180.02562 * 18 17 16 20 20 C 1.39280 * 119.86108 * 0.02562 * 18 17 16 21 21 C 1.38607 * 117.95238 * 359.75041 * 20 18 17 22 22 Br 1.89098 * 121.02684 * 180.26469 * 21 20 18 23 23 C 1.47023 * 125.64764 * 179.43947 * 9 7 2 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.36548 * 322.92952 * 10 9 7 26 26 H 1.08999 * 110.36380 * 85.25460 * 10 9 7 27 27 H 1.09000 * 111.00555 * 81.06615 * 11 10 9 28 28 H 1.08997 * 111.00457 * 204.87678 * 11 10 9 29 29 H 0.96700 * 113.99925 * 90.00061 * 19 18 17 30 30 H 1.08002 * 121.02537 * 180.02562 * 20 18 17 31 31 H 1.08999 * 109.88097 * 298.39553 * 23 9 7 32 32 H 1.08998 * 109.88079 * 59.55691 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1417 -2.5331 -0.0080 11 6 -0.4020 -3.9356 0.5961 12 6 0.7783 -4.7525 0.0069 13 1 0.5460 -5.0925 -1.0023 14 8 1.0999 -5.8582 0.8529 15 6 1.6099 -6.9650 0.2538 16 7 1.7882 -6.9869 -1.0556 17 7 2.2674 -8.0106 -1.6635 18 6 2.6157 -9.1124 -1.0211 19 8 3.1190 -10.1701 -1.7080 20 6 2.4653 -9.1860 0.3615 21 6 1.9522 -8.0790 1.0191 22 35 1.7185 -8.0815 2.8956 23 6 1.9316 -3.7274 -0.0197 24 1 -0.4850 0.8401 0.0004 25 1 -0.5996 -1.7621 0.6117 26 1 -0.5271 -2.4811 -1.0263 27 1 -0.3527 -3.9074 1.6846 28 1 -1.3595 -4.3338 0.2607 29 1 4.0814 -10.1566 -1.8011 30 1 2.7440 -10.0766 0.9052 31 1 2.5246 -3.8571 -0.9250 32 1 2.5614 -3.8578 0.8603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226848803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:41 Heat of formation + Delta-G solvation = 27.606210 kcal Electronic energy + Delta-G solvation = -19843.898927 eV Core-core repulsion = 16467.883094 eV Total energy + Delta-G solvation = -3376.015833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61571 -39.23193 -37.66698 -36.34984 -34.18704 -32.37041 -31.05633 -30.37654 -29.27845 -27.50074 -25.22750 -24.28543 -23.97633 -20.70562 -20.32742 -19.31021 -18.51671 -18.15094 -16.94706 -16.56460 -15.56724 -15.03187 -14.76483 -14.40228 -14.30491 -14.02001 -13.32658 -13.01209 -12.53037 -12.47999 -12.21809 -12.06676 -11.88129 -11.59629 -11.02942 -10.83587 -10.63871 -10.55245 -10.44731 -10.10960 -10.04115 -9.91811 -9.70114 -9.60843 -8.98004 -8.69762 -6.89748 -5.69725 -3.11772 0.12094 0.53573 1.00865 2.64765 2.91820 3.19192 3.39159 3.44597 3.47208 3.77486 4.31064 4.33010 4.48042 4.75350 4.92579 5.22116 5.32345 5.45510 5.46019 5.66442 5.73240 6.18219 6.38235 6.44519 6.46142 6.60346 6.94841 7.20362 7.42391 7.58025 7.78150 8.29035 8.29756 9.16920 9.77112 10.40094 11.34943 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.003562 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.917286 B = 7857.886004 C = 8662.637051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.138 4.138 12 C 0.068 3.932 13 H 0.098 0.902 14 O -0.270 6.270 15 C 0.294 3.706 16 N -0.257 5.257 17 N -0.202 5.202 18 C 0.219 3.781 19 O -0.468 6.468 20 C -0.072 4.072 21 C -0.107 4.107 22 Br 0.008 6.992 23 C 0.125 3.875 24 H 0.253 0.747 25 H 0.115 0.885 26 H 0.019 0.981 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.404 0.596 30 H 0.169 0.831 31 H 0.032 0.968 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -21.898 4.473 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.029 3.971 11 C -0.176 4.176 12 C 0.012 3.988 13 H 0.116 0.884 14 O -0.172 6.172 15 C 0.107 3.893 16 N -0.118 5.118 17 N -0.055 5.055 18 C 0.030 3.970 19 O -0.272 6.272 20 C -0.104 4.104 21 C -0.199 4.199 22 Br 0.092 6.908 23 C -0.001 4.001 24 H 0.064 0.936 25 H 0.133 0.867 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.261 0.739 30 H 0.186 0.814 31 H 0.050 0.950 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.287 -20.996 4.020 21.629 hybrid contribution 1.184 0.093 0.649 1.354 sum 4.471 -20.904 4.668 21.880 Atomic orbital electron populations 1.69760 1.04922 1.24843 1.57596 1.24790 0.95760 0.97752 1.02221 0.85964 0.78656 0.83382 0.77280 1.20496 1.21659 1.21668 1.19127 0.90607 0.82144 1.43174 0.90294 1.44366 1.01870 0.99385 1.87115 1.22000 0.84859 0.91468 0.98750 1.23289 0.94791 0.97934 1.01628 1.23930 0.97812 0.82826 0.94256 0.88359 1.86472 1.73799 1.20869 1.36052 1.21325 0.89874 0.88123 0.90000 1.73296 1.15146 1.17579 1.05825 1.72654 1.05713 0.95790 1.31371 1.20568 1.00147 0.88704 0.87604 1.84869 1.27847 1.38612 1.75915 1.22457 0.95602 0.98098 0.94207 1.22279 1.07568 0.95386 0.94654 1.96846 1.96014 1.98840 0.99076 1.21561 0.93499 0.86155 0.98911 0.93634 0.86748 0.96340 0.90673 0.91352 0.73887 0.81351 0.94993 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.56 3.39 -170.07 -0.58 -16.14 16 10 C 0.15 3.72 5.88 -2.53 -0.01 3.70 16 11 C -0.14 -2.65 6.81 -24.58 -0.17 -2.81 16 12 C 0.07 1.27 3.24 -24.89 -0.08 1.19 16 13 H 0.10 1.83 6.98 -51.93 -0.36 1.47 16 14 O -0.27 -4.58 9.30 -19.11 -0.18 -4.75 16 15 C 0.29 4.48 7.57 -16.97 -0.13 4.35 16 16 N -0.26 -4.15 9.80 30.52 0.30 -3.85 16 17 N -0.20 -2.93 11.51 30.50 0.35 -2.58 16 18 C 0.22 2.41 7.85 -17.00 -0.13 2.27 16 19 O -0.47 -3.88 13.58 -19.07 -0.26 -4.14 16 20 C -0.07 -0.69 9.94 -39.06 -0.39 -1.08 16 21 C -0.11 -1.30 6.30 -39.01 -0.25 -1.55 16 22 Br 0.01 0.08 33.31 -68.01 -2.27 -2.18 16 23 C 0.13 2.74 7.03 -3.06 -0.02 2.72 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.11 3.07 5.88 -51.93 -0.31 2.76 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.40 1.22 9.06 45.56 0.41 1.63 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -31.88 298.99 -6.35 -38.23 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -2.33 Total: -2.04 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.43 Total: 2.03 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.63 Total: -48.64 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.44 Total: -8.90 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.27 Total: -2.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.88 -6.35 -38.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226848803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.836 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds