Wall clock time and date at job start Tue Mar 31 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00326 * 2 1 4 4 H 1.48497 * 109.47206 * 240.00266 * 3 2 1 5 5 H 1.48496 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47093 * 120.00107 * 3 2 1 7 7 C 1.37879 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00079 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47443 * 180.02562 * 9 7 2 11 11 C 1.47962 * 111.00101 * 169.99732 * 10 9 7 12 12 C 1.53935 * 86.18119 * 222.41944 * 11 10 9 13 13 O 1.42901 * 113.73317 * 138.08446 * 12 11 10 14 14 C 1.35529 * 116.99824 * 150.00179 * 13 12 11 15 15 N 1.32759 * 120.48193 * 359.97438 * 14 13 12 16 16 C 1.32284 * 120.67377 * 180.02562 * 15 14 13 17 17 O 1.35474 * 119.16013 * 179.72424 * 16 15 14 18 18 N 1.32306 * 121.68824 * 0.02562 * 16 15 14 19 19 C 1.32473 * 120.90735 * 359.97438 * 18 16 15 20 20 C 1.38286 * 119.23600 * 0.02562 * 19 18 16 21 21 Br 1.89105 * 120.77301 * 179.97438 * 20 19 18 22 22 C 1.47963 * 110.99559 * 70.64193 * 10 9 7 23 23 H 0.96997 * 119.99915 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47182 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.47429 * 300.00490 * 9 7 2 26 26 H 1.09000 * 113.75366 * 108.09892 * 11 10 9 27 27 H 1.09000 * 113.75993 * 336.74207 * 11 10 9 28 28 H 1.09007 * 113.73154 * 269.25944 * 12 11 10 29 29 H 0.96698 * 114.00000 * 89.99870 * 17 16 15 30 30 H 1.08004 * 120.37945 * 180.02562 * 19 18 16 31 31 H 1.08997 * 113.76448 * 23.26721 * 22 10 9 32 32 H 1.09001 * 113.75567 * 251.89848 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5160 -4.9028 0.2394 12 6 2.6926 -5.2413 1.1725 13 8 2.2967 -5.8747 2.3908 14 6 3.1804 -6.7353 2.9522 15 7 4.3551 -6.9644 2.3777 16 6 5.2203 -7.8040 2.9221 17 8 6.4079 -8.0192 2.3068 18 7 4.9531 -8.4435 4.0491 19 6 3.8007 -8.2634 4.6769 20 6 2.8683 -7.3939 4.1411 21 35 1.2090 -7.1047 5.0007 22 6 2.8980 -3.7213 1.3028 23 1 -0.4850 0.8400 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 1.4574 -5.5406 -0.6426 27 1 0.5615 -4.8001 0.7556 28 1 3.5141 -5.7556 0.6737 29 1 7.1104 -7.4162 2.5859 30 1 3.5916 -8.7896 5.5967 31 1 2.3478 -3.2731 2.1301 32 1 3.9436 -3.4151 1.2704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227138243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:22 Heat of formation + Delta-G solvation = 26.959700 kcal Electronic energy + Delta-G solvation = -19563.510841 eV Core-core repulsion = 16187.466972 eV Total energy + Delta-G solvation = -3376.043868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68031 -39.84280 -38.07721 -37.09973 -33.69540 -32.99746 -32.60425 -29.68015 -29.09526 -25.95662 -25.58781 -24.39448 -24.05180 -21.80178 -19.91409 -19.71824 -18.36356 -17.84875 -16.68257 -16.29875 -15.64861 -15.50622 -15.34643 -14.65439 -14.47262 -14.24015 -13.87973 -13.01175 -12.75160 -12.36344 -12.20448 -12.02180 -11.75357 -11.59320 -11.36818 -11.06838 -10.91375 -10.73083 -10.71574 -10.35115 -10.05457 -9.79204 -9.64287 -9.25266 -9.02417 -8.55288 -7.96819 -6.10250 -4.12833 0.22078 0.70016 1.22024 2.44648 2.76485 3.18094 3.29507 3.33676 3.36573 3.68924 4.26600 4.36714 4.47891 4.60020 4.71769 4.74314 5.25862 5.30808 5.43942 5.70839 5.92446 6.01065 6.17021 6.25302 6.31905 6.51728 6.90155 7.07675 7.12455 7.52956 7.53710 7.77855 8.00298 8.31791 8.93567 9.51894 11.00939 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.003515 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.923048 B = 7963.296766 C = 9030.973106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.470 5.470 11 C 0.005 3.995 12 C 0.041 3.959 13 O -0.269 6.269 14 C 0.423 3.577 15 N -0.573 5.573 16 C 0.548 3.452 17 O -0.454 6.454 18 N -0.546 5.546 19 C 0.229 3.771 20 C -0.245 4.245 21 Br 0.000 7.000 22 C 0.015 3.985 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.002 0.998 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.417 0.583 30 H 0.188 0.812 31 H 0.078 0.922 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -18.166 12.217 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.195 5.195 11 C -0.124 4.124 12 C -0.015 4.015 13 O -0.170 6.170 14 C 0.234 3.766 15 N -0.315 5.315 16 C 0.243 3.757 17 O -0.258 6.258 18 N -0.277 5.277 19 C 0.064 3.936 20 C -0.331 4.331 21 Br 0.084 6.916 22 C -0.114 4.114 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.020 0.980 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.278 0.722 30 H 0.205 0.795 31 H 0.096 0.904 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.199 -18.264 11.163 22.285 hybrid contribution -0.103 1.435 0.851 1.672 sum 6.096 -16.830 12.014 21.558 Atomic orbital electron populations 1.69938 1.06089 1.27089 1.50424 1.24980 0.94881 0.99394 0.95130 0.86531 0.79458 0.82564 0.78715 1.20063 1.21234 1.20235 1.21025 0.93417 0.89860 1.50989 0.91985 1.20237 0.90786 0.88284 0.96947 1.68639 1.21462 1.01974 1.27387 1.24266 0.96045 0.94965 0.97105 1.25308 1.00583 0.93677 0.81899 1.86543 1.38501 1.51787 1.40185 1.19528 0.85272 0.84952 0.86870 1.67672 1.04412 1.22533 1.36895 1.19976 0.87252 0.84577 0.83858 1.84703 1.17205 1.59624 1.64289 1.68170 1.21790 1.27804 1.09887 1.22986 0.84858 0.89049 0.96753 1.22737 0.99933 1.09632 1.00762 1.96792 1.21566 1.96305 1.76951 1.24184 1.01761 0.91072 0.94339 0.92713 0.94581 0.97983 0.89161 0.90574 0.85814 0.72173 0.79540 0.90374 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.38 8.84 -34.44 -0.30 -14.68 16 8 H 0.06 1.72 7.80 -52.49 -0.41 1.31 16 9 C 0.16 4.21 4.58 -4.98 -0.02 4.19 16 10 N -0.47 -10.05 6.25 -239.96 -1.50 -11.55 16 11 C 0.01 0.09 7.81 -2.77 -0.02 0.07 16 12 C 0.04 0.67 4.38 -25.80 -0.11 0.56 16 13 O -0.27 -4.15 9.59 -18.28 -0.18 -4.33 16 14 C 0.42 5.85 7.52 -16.70 -0.13 5.72 16 15 N -0.57 -7.82 8.77 -14.77 -0.13 -7.95 16 16 C 0.55 6.55 8.71 -91.29 -0.80 5.76 16 17 O -0.45 -4.45 13.64 -18.11 -0.25 -4.70 16 18 N -0.55 -6.09 10.46 -14.78 -0.15 -6.24 16 19 C 0.23 2.18 11.07 -17.26 -0.19 1.99 16 20 C -0.24 -2.82 6.28 -39.11 -0.25 -3.07 16 21 Br 0.00 0.01 33.30 -68.01 -2.26 -2.26 16 22 C 0.02 0.29 7.29 -2.76 -0.02 0.27 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.00 0.06 7.69 -51.93 -0.40 -0.34 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.08 1.36 7.79 -51.93 -0.40 0.96 16 28 H 0.12 1.96 6.91 -51.93 -0.36 1.60 16 29 H 0.42 1.86 9.06 45.56 0.41 2.28 16 30 H 0.19 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -31.97 305.92 -8.47 -40.44 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -2.39 Total: -1.16 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.94 Total: 2.35 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -1.05 Total: -51.42 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.42 Total: -9.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.26 Total: -2.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.97 -8.47 -40.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227138243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.400 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds