Wall clock time and date at job start Tue Mar 31 2020 05:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47029 * 335.75708 * 3 2 1 5 5 C 1.37099 * 119.99872 * 263.95105 * 4 3 2 6 6 H 1.08008 * 119.99805 * 200.22210 * 5 4 3 7 7 C 1.38949 * 119.99961 * 20.21700 * 5 4 3 8 8 N 1.31407 * 120.00101 * 21.42821 * 7 5 4 9 9 Si 1.86797 * 119.99799 * 201.42331 * 7 5 4 10 10 H 1.48496 * 109.47268 * 60.00351 * 9 7 5 11 11 H 1.48501 * 109.47187 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47386 * 300.00100 * 9 7 5 13 13 C 1.34777 * 120.00173 * 83.95368 * 4 3 2 14 14 O 1.21292 * 120.00408 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99958 * 359.97438 * 13 4 3 16 16 C 1.50695 * 109.47460 * 180.02562 * 15 13 4 17 17 C 1.33391 * 125.20285 * 89.99634 * 16 15 13 18 18 C 1.38427 * 114.91686 * 180.02562 * 17 16 15 19 19 C 1.33387 * 114.92537 * 359.97438 * 18 17 16 20 20 S 1.76201 * 125.20513 * 179.97438 * 19 18 17 21 21 N 1.65595 * 107.21993 * 90.01573 * 20 19 18 22 22 O 1.42095 * 106.40380 * 203.55874 * 20 19 18 23 23 O 1.42106 * 106.39987 * 336.47784 * 20 19 18 24 24 S 1.75884 * 109.59342 * 0.02562 * 19 18 17 25 25 H 1.09002 * 109.47409 * 215.75788 * 3 2 1 26 26 H 1.09007 * 109.47179 * 95.75302 * 3 2 1 27 27 H 0.97001 * 120.00303 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47274 * 60.00173 * 15 13 4 29 29 H 1.09002 * 109.46879 * 300.00118 * 15 13 4 30 30 H 1.07995 * 122.53903 * 0.05061 * 17 16 15 31 31 H 1.08005 * 122.53424 * 180.02562 * 18 17 16 32 32 H 0.97007 * 119.99432 * 0.02562 * 21 20 19 33 33 H 0.96993 * 120.00679 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2586 0.5671 5 6 3.4434 -1.3248 1.8920 6 1 4.0931 -2.1137 2.2414 7 6 2.9587 -0.3771 2.7851 8 7 1.8758 0.3076 2.4931 9 14 3.8466 -0.0764 4.4008 10 1 5.2370 0.3671 4.1265 11 1 3.1335 0.9754 5.1692 12 1 3.8748 -1.3331 5.1915 13 6 3.2061 -2.3518 -0.2135 14 8 3.6113 -3.3942 0.2559 15 6 2.8248 -2.2791 -1.6696 16 6 3.0375 -3.6253 -2.3125 17 6 2.1244 -4.5948 -2.3871 18 6 2.5485 -5.7477 -3.0251 19 6 3.8059 -5.7143 -3.4692 20 16 4.6194 -7.0280 -4.3159 21 7 4.3423 -6.8141 -5.9344 22 8 6.0126 -6.8311 -4.1179 23 8 3.9432 -8.2223 -3.9475 24 16 4.5280 -4.1587 -3.0791 25 1 2.9710 0.8348 0.6005 26 1 2.9713 0.1038 -1.0225 27 1 1.5377 0.9695 3.1164 28 1 3.4439 -1.5349 -2.1706 29 1 1.7755 -1.9970 -1.7567 30 1 1.1294 -4.4882 -1.9808 31 1 1.9095 -6.6087 -3.1544 32 1 3.8117 -6.0617 -6.2403 33 1 4.7110 -7.4405 -6.5766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251424492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:41 Heat of formation + Delta-G solvation = -34.873150 kcal Electronic energy + Delta-G solvation = -22709.324190 eV Core-core repulsion = 18989.823311 eV Total energy + Delta-G solvation = -3719.500879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.034 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.22619 -37.82625 -37.12790 -35.92753 -35.90326 -34.47583 -33.40983 -32.42097 -31.65771 -27.89254 -27.39996 -24.96400 -23.37265 -20.55540 -19.82042 -19.25742 -18.14786 -17.82503 -17.54143 -16.80783 -16.67749 -16.34556 -15.88904 -15.42736 -14.84773 -14.55576 -14.26994 -13.88755 -13.36285 -13.14262 -12.83922 -12.64245 -12.47199 -12.30145 -12.23452 -12.11681 -12.06293 -11.83027 -11.72547 -11.44968 -11.27173 -11.15810 -10.80212 -10.72097 -10.69489 -10.51175 -10.44729 -9.36692 -9.23788 -8.70407 -8.47725 -8.16150 -6.61783 -4.13115 0.23120 0.52268 1.43514 1.80820 2.49652 3.04408 3.05423 3.16440 3.18457 3.39956 3.50869 3.63630 3.83519 4.02652 4.55978 4.68739 4.74238 4.78591 5.03191 5.11335 5.37536 5.39948 5.46510 5.67385 5.74248 5.81581 5.95303 6.13113 6.32652 6.33452 6.76884 7.36921 7.75210 8.14403 8.60261 8.86301 9.04941 9.56445 10.44280 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.003069 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.729738 B = 9121.533035 C = 9735.724404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.242 3.758 3 C 0.219 3.781 4 N -0.438 5.438 5 C -0.317 4.317 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.929 3.071 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.455 3.545 14 O -0.559 6.559 15 C -0.084 4.084 16 C -0.083 4.083 17 C -0.170 4.170 18 C 0.025 3.975 19 C -0.814 4.814 20 S 2.733 3.267 21 N -1.251 6.251 22 O -0.961 6.961 23 O -0.961 6.961 24 S 0.230 5.770 25 H 0.127 0.873 26 H 0.085 0.915 27 H 0.275 0.725 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.417 0.583 33 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -4.056 -16.931 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.076 4.076 3 C 0.092 3.908 4 N -0.158 5.158 5 C -0.444 4.444 6 H 0.126 0.874 7 C -0.169 4.169 8 N -0.512 5.512 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.242 3.758 14 O -0.441 6.441 15 C -0.127 4.127 16 C -0.204 4.204 17 C -0.199 4.199 18 C -0.011 4.011 19 C -1.017 5.017 20 S 2.819 3.181 21 N -0.926 5.926 22 O -0.950 6.950 23 O -0.951 6.951 24 S 0.497 5.503 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.244 0.756 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.025 -4.474 -16.231 17.311 hybrid contribution -1.388 0.422 1.019 1.773 sum 2.637 -4.052 -15.213 15.963 Atomic orbital electron populations 1.80916 1.13519 1.08305 1.11991 1.29260 0.95329 0.92796 0.90243 1.18739 0.81741 0.91555 0.98800 1.43592 1.56423 1.06163 1.09643 1.19675 1.28149 1.14617 0.81953 0.87350 1.25307 0.94710 0.97157 0.99764 1.69822 1.17865 1.25124 1.38422 0.85945 0.79406 0.78402 0.80773 1.19566 1.20959 1.19712 1.19768 0.84887 0.84218 0.86910 1.90611 1.49641 1.28786 1.75059 1.20465 1.04418 0.92123 0.95655 1.24652 0.96541 0.99746 0.99424 1.20270 1.02237 0.92890 1.04529 1.19921 0.92439 0.97996 0.90785 1.35156 1.12337 1.22728 1.31488 1.00647 0.73196 0.72310 0.71991 1.53094 1.71063 1.41355 1.27066 1.93611 1.30902 1.85615 1.84879 1.93597 1.75622 1.43607 1.82254 1.84044 1.12232 1.02583 1.51419 0.85563 0.89695 0.91422 0.88162 0.87610 0.83431 0.82936 0.75611 0.75107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.36 18.54 42.15 0.78 -9.58 16 2 C 0.24 4.91 12.82 -20.76 -0.27 4.65 16 3 C 0.22 3.92 4.91 -6.83 -0.03 3.89 16 4 N -0.44 -9.50 2.60 -117.93 -0.31 -9.81 16 5 C -0.32 -7.80 9.27 -14.93 -0.14 -7.94 16 6 H 0.11 2.84 7.43 -52.48 -0.39 2.45 16 7 C 0.04 0.83 4.84 -17.47 -0.08 0.75 16 8 N -0.87 -21.16 9.58 55.50 0.53 -20.63 16 9 Si 0.93 19.03 29.60 -169.99 -5.03 14.00 16 10 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.46 9.56 7.56 -10.98 -0.08 9.47 16 14 O -0.56 -13.98 15.71 5.55 0.09 -13.90 16 15 C -0.08 -1.29 4.80 -29.04 -0.14 -1.42 16 16 C -0.08 -1.25 5.00 -36.00 -0.18 -1.43 16 17 C -0.17 -2.42 10.05 -41.21 -0.41 -2.83 16 18 C 0.03 0.32 9.84 -41.21 -0.41 -0.08 16 19 C -0.81 -10.40 6.54 29.04 0.19 -10.21 16 20 S 2.73 31.20 6.43 -107.50 -0.69 30.51 16 21 N -1.25 -8.02 9.55 60.35 0.58 -7.44 16 22 O -0.96 -14.09 17.91 -57.17 -1.02 -15.12 16 23 O -0.96 -13.69 17.80 -57.17 -1.02 -14.71 16 24 S 0.23 3.17 23.20 -107.50 -2.49 0.68 16 25 H 0.13 2.32 6.63 -51.93 -0.34 1.98 16 26 H 0.09 1.08 6.69 -51.93 -0.35 0.73 16 27 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.10 1.18 7.42 -51.93 -0.39 0.79 16 29 H 0.11 1.51 7.49 -51.93 -0.39 1.12 16 30 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.42 1.72 8.92 -34.46 -0.31 1.41 16 33 H 0.42 1.85 8.96 -34.47 -0.31 1.54 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -35.46 325.83 -7.69 -43.14 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.45 Total: 3.12 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.55 Total: -5.17 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 1.58 Total: -47.46 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.95 Total: -43.72 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 34.37 SS G_CDS: -3.19 Total: 31.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.46 -7.69 -43.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251424492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.270 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds