Wall clock time and date at job start Tue Mar 31 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99456 * 2 1 4 4 C 1.46905 * 110.99773 * 123.94434 * 2 1 3 5 5 C 1.52996 * 109.46585 * 162.66340 * 4 2 1 6 6 C 1.52991 * 109.47532 * 302.02146 * 5 4 2 7 7 O 1.42896 * 109.47291 * 62.02535 * 5 4 2 8 8 C 1.53002 * 109.46821 * 182.02282 * 5 4 2 9 9 N 1.46499 * 109.47346 * 180.02562 * 8 5 4 10 10 C 1.34779 * 120.00521 * 180.02562 * 9 8 5 11 11 O 1.21595 * 119.99604 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00244 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99942 * 179.97438 * 12 10 9 14 14 C 1.53038 * 109.45749 * 275.02849 * 13 12 10 15 15 C 1.53195 * 109.31119 * 178.60168 * 14 13 12 16 16 N 1.46927 * 108.76607 * 54.65200 * 15 14 13 17 17 C 1.36940 * 120.63113 * 126.40579 * 16 15 14 18 18 H 1.08003 * 119.99861 * 326.38113 * 17 16 15 19 19 C 1.38805 * 120.00142 * 146.37524 * 17 16 15 20 20 N 1.31618 * 120.00133 * 347.47479 * 19 17 16 21 21 Si 1.86803 * 120.00103 * 167.46766 * 19 17 16 22 22 H 1.48494 * 109.46984 * 60.00339 * 21 19 17 23 23 H 1.48499 * 109.47322 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46995 * 300.00300 * 21 19 17 25 25 C 1.46925 * 118.73995 * 306.39013 * 16 15 14 26 26 C 1.53031 * 109.45925 * 154.97407 * 13 12 10 27 27 H 1.08991 * 109.47628 * 291.70940 * 1 2 3 28 28 H 1.08996 * 109.47247 * 51.71943 * 1 2 3 29 29 H 1.09010 * 109.46524 * 171.71229 * 1 2 3 30 30 H 1.09003 * 109.47099 * 192.41655 * 3 2 1 31 31 H 1.08996 * 109.47265 * 312.40925 * 3 2 1 32 32 H 1.08994 * 109.47781 * 72.41410 * 3 2 1 33 33 H 1.09007 * 109.46956 * 42.67145 * 4 2 1 34 34 H 1.08996 * 109.47044 * 282.66682 * 4 2 1 35 35 H 1.09007 * 109.47517 * 184.35824 * 6 5 4 36 36 H 1.09005 * 109.47169 * 304.35269 * 6 5 4 37 37 H 1.09002 * 109.47470 * 64.35668 * 6 5 4 38 38 H 0.96703 * 113.99871 * 59.99820 * 7 5 4 39 39 H 1.09001 * 109.47540 * 300.00176 * 8 5 4 40 40 H 1.09002 * 109.47727 * 60.00086 * 8 5 4 41 41 H 0.96998 * 120.00103 * 359.97438 * 9 8 5 42 42 H 0.96999 * 120.00357 * 0.02562 * 12 10 9 43 43 H 1.09001 * 109.46047 * 34.99804 * 13 12 10 44 44 H 1.09003 * 109.50148 * 298.56333 * 14 13 12 45 45 H 1.09005 * 109.50310 * 58.66369 * 14 13 12 46 46 H 1.08999 * 109.59904 * 294.86553 * 15 14 13 47 47 H 1.09001 * 109.70599 * 174.50761 * 15 14 13 48 48 H 0.97002 * 120.00481 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.58342 * 293.81546 * 25 16 15 50 50 H 1.09000 * 109.70192 * 173.46855 * 25 16 15 51 51 H 1.09003 * 109.50240 * 301.33498 * 26 13 12 52 52 H 1.09002 * 109.50118 * 61.40324 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7658 1.1378 5 6 3.4637 -1.1127 0.8833 6 6 3.5817 -1.9081 -0.4183 7 8 4.2260 0.0912 0.7766 8 6 3.9978 -1.9532 2.0448 9 7 5.4039 -2.2849 1.8016 10 6 6.0867 -3.0246 2.6978 11 8 5.5357 -3.4163 3.7085 12 7 7.3800 -3.3302 2.4737 13 6 8.1223 -4.1338 3.4482 14 6 8.6791 -3.2210 4.5431 15 6 9.4248 -4.0687 5.5786 16 7 10.4426 -4.8719 4.8875 17 6 11.7516 -4.8338 5.2877 18 1 12.1699 -3.9186 5.6800 19 6 12.5409 -5.9714 5.1893 20 7 11.9844 -7.1398 4.9497 21 14 14.3930 -5.8440 5.3967 22 1 14.7042 -5.3071 6.7457 23 1 15.0017 -7.1902 5.2466 24 1 14.9455 -4.9334 4.3619 25 6 10.0292 -5.7170 3.7590 26 6 9.2764 -4.8509 2.7442 27 1 -0.3634 0.3801 0.9547 28 1 -0.3633 0.6366 -0.8067 29 1 -0.3633 -1.0171 -0.1482 30 1 3.0626 1.3511 -0.2210 31 1 1.4785 1.9590 -0.7587 32 1 1.8357 1.8220 0.9795 33 1 1.4202 -1.6843 1.2548 34 1 1.9153 -0.1686 2.0460 35 1 4.6160 -2.2216 -0.5601 36 1 2.9395 -2.7873 -0.3663 37 1 3.2738 -1.2822 -1.2558 38 1 4.1970 0.6466 1.5677 39 1 3.9138 -1.3866 2.9722 40 1 3.4164 -2.8716 2.1263 41 1 5.8433 -1.9728 0.9951 42 1 7.8197 -3.0174 1.6676 43 1 7.4549 -4.8710 3.8946 44 1 9.3660 -2.4993 4.1009 45 1 7.8585 -2.6927 5.0287 46 1 8.7211 -4.7286 6.0860 47 1 9.9064 -3.4178 6.3084 48 1 12.5358 -7.9349 4.8813 49 1 9.3748 -6.5114 4.1180 50 1 10.9084 -6.1540 3.2857 51 1 8.8811 -5.4829 1.9489 52 1 9.9573 -4.1138 2.3185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253535691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:40 Heat of formation + Delta-G solvation = -53.543776 kcal Electronic energy + Delta-G solvation = -28993.098505 eV Core-core repulsion = 25028.333305 eV Total energy + Delta-G solvation = -3964.765199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24044 -39.27339 -37.43441 -36.44389 -34.47060 -34.20728 -32.29038 -31.59209 -30.03778 -29.29732 -27.89870 -27.58153 -26.48881 -24.75290 -22.66043 -22.18038 -21.77552 -20.81230 -20.45595 -19.38628 -18.23467 -17.30440 -16.66644 -16.21506 -15.99971 -15.73153 -15.37130 -15.05018 -14.80785 -14.50720 -14.28381 -14.09760 -13.72030 -13.51194 -13.42987 -13.17182 -12.90961 -12.76420 -12.66359 -12.59989 -12.37166 -12.29621 -12.18115 -11.92452 -11.73334 -11.40072 -11.17008 -11.06497 -10.81757 -10.71434 -10.45334 -10.23605 -10.21500 -10.03151 -9.97170 -9.75001 -9.48811 -9.13213 -8.75417 -8.54053 -8.41662 -6.56695 -5.77300 -3.25724 2.76515 3.39412 3.41870 3.44678 3.45785 3.49685 3.84259 4.33188 4.41467 4.47614 4.50776 4.53497 4.76963 4.92025 4.98822 5.06688 5.24315 5.26337 5.38204 5.39404 5.43291 5.44666 5.51175 5.56004 5.59893 5.65210 5.67095 5.82997 5.94935 6.01787 6.13462 6.34338 6.40762 6.42613 6.54688 6.56483 6.59221 6.62607 6.66387 6.86140 6.96443 7.04633 7.16804 7.22755 7.34312 7.63525 7.82084 8.20940 8.51076 8.81163 9.24476 9.85623 10.46299 11.31527 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.039563 B = 0.001920 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.558972 B =14580.179673 C =14613.669967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.536 5.536 3 C 0.011 3.989 4 C 0.031 3.969 5 C 0.128 3.872 6 C -0.127 4.127 7 O -0.549 6.549 8 C 0.117 3.883 9 N -0.744 5.744 10 C 0.701 3.299 11 O -0.594 6.594 12 N -0.739 5.739 13 C 0.170 3.830 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.178 3.822 26 C -0.147 4.147 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.020 0.980 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.374 0.626 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.398 0.602 42 H 0.391 0.609 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.055 0.945 48 H 0.255 0.745 49 H 0.022 0.978 50 H 0.085 0.915 51 H 0.053 0.947 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.099 14.781 -12.528 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.137 4.137 4 C -0.098 4.098 5 C 0.086 3.914 6 C -0.184 4.184 7 O -0.355 6.355 8 C -0.009 4.009 9 N -0.402 5.402 10 C 0.401 3.599 11 O -0.472 6.472 12 N -0.392 5.392 13 C 0.066 3.934 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.080 0.920 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.051 3.949 26 C -0.187 4.187 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.222 0.778 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.233 0.767 42 H 0.224 0.776 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.103 0.897 51 H 0.072 0.928 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.243 13.753 -12.600 28.270 hybrid contribution 0.810 0.951 0.722 1.443 sum -20.433 14.704 -11.879 27.836 Atomic orbital electron populations 1.22448 0.87487 1.02447 1.00293 1.61891 1.07392 1.14470 1.42161 1.22773 1.03436 0.87867 0.99578 1.22741 0.95975 0.99198 0.91872 1.21476 0.88996 0.84978 0.95914 1.21593 1.01856 0.99068 0.95927 1.86572 1.72823 1.33398 1.42717 1.21709 0.82046 0.99731 0.97442 1.44962 1.11980 1.58085 1.25125 1.16020 0.81661 0.79070 0.83154 1.90918 1.69179 1.58838 1.28305 1.45532 1.09885 1.57897 1.25881 1.20890 0.92199 0.92023 0.88320 1.22391 0.99089 0.98683 0.97774 1.20890 0.91164 0.93158 0.92719 1.44010 1.04012 1.50915 1.32500 1.19095 0.85932 0.94262 1.39251 0.92006 1.25215 0.98585 0.94964 1.00501 1.69983 1.34166 0.97659 1.52823 0.86361 0.85458 0.76621 0.78210 1.20829 1.21630 1.20995 1.20673 0.97420 0.90304 0.86467 1.22549 0.96438 0.99977 0.99696 0.95774 0.91339 0.91332 0.88357 0.92183 0.96158 0.89639 0.94049 0.92483 0.91353 0.90426 0.77804 0.91751 0.90884 0.76697 0.77624 0.90124 0.92522 0.92809 0.96211 0.92638 0.93530 0.95992 0.89687 0.92806 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.53 60.07 0.57 0.69 16 2 N -0.54 -3.55 4.20 -251.26 -1.05 -4.61 16 3 C 0.01 0.07 9.04 60.06 0.54 0.61 16 4 C 0.03 0.20 4.28 -3.82 -0.02 0.18 16 5 C 0.13 0.89 0.81 -90.63 -0.07 0.82 16 6 C -0.13 -0.94 8.48 37.15 0.32 -0.62 16 7 O -0.55 -3.82 9.63 -35.23 -0.34 -4.16 16 8 C 0.12 1.08 4.78 -4.04 -0.02 1.06 16 9 N -0.74 -8.04 5.12 -65.22 -0.33 -8.37 16 10 C 0.70 10.66 8.53 -86.92 -0.74 9.92 16 11 O -0.59 -11.59 16.01 5.28 0.08 -11.50 16 12 N -0.74 -10.74 5.08 -58.63 -0.30 -11.04 16 13 C 0.17 3.04 2.42 -67.89 -0.16 2.88 16 14 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 15 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 16 N -0.59 -14.97 2.97 -172.32 -0.51 -15.48 16 17 C -0.26 -7.04 9.54 -15.06 -0.14 -7.19 16 18 H 0.06 1.68 7.86 -52.48 -0.41 1.26 16 19 C 0.01 0.18 4.99 -17.43 -0.09 0.09 16 20 N -0.90 -26.22 11.34 55.49 0.63 -25.59 16 21 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C 0.18 4.22 5.24 -3.71 -0.02 4.20 16 26 C -0.15 -2.72 5.55 -26.62 -0.15 -2.87 16 27 H 0.02 0.13 8.13 -51.93 -0.42 -0.29 16 28 H 0.07 0.34 7.94 -51.93 -0.41 -0.07 16 29 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.10 0.67 5.68 -51.93 -0.30 0.37 16 31 H 0.06 0.34 7.91 -51.93 -0.41 -0.07 16 32 H 0.02 0.12 7.92 -51.93 -0.41 -0.30 16 33 H 0.09 0.52 7.98 -51.93 -0.41 0.10 16 34 H 0.04 0.25 7.88 -51.93 -0.41 -0.16 16 35 H 0.06 0.43 6.75 -51.93 -0.35 0.08 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 38 H 0.37 1.81 9.03 45.56 0.41 2.22 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.59 7.20 -40.82 -0.29 3.30 16 42 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 43 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 2.22 6.36 -51.93 -0.33 1.89 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -32.69 402.77 -9.61 -42.30 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.67 Total: 5.52 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.16 Total: 10.23 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -1.57 Total: -65.10 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.25 Total: -15.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.69 -9.61 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253535691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.245 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds