Wall clock time and date at job start Tue Mar 31 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47134 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47176 * 119.99601 * 3 2 1 6 6 H 1.48503 * 109.46915 * 239.99827 * 3 2 1 7 7 C 1.37878 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 191.92618 * 7 2 1 9 9 C 1.50704 * 119.99583 * 11.93501 * 7 2 1 10 10 O 1.42899 * 112.94537 * 54.27857 * 9 7 2 11 11 C 1.53946 * 113.73934 * 282.54477 * 9 7 2 12 12 N 1.47582 * 86.11340 * 222.05032 * 11 9 7 13 13 S 1.65605 * 134.48837 * 204.64399 * 12 11 9 14 14 O 1.42093 * 106.40511 * 23.53770 * 13 12 11 15 15 O 1.42103 * 106.40062 * 156.46148 * 13 12 11 16 16 C 1.76204 * 107.21442 * 269.99436 * 13 12 11 17 17 C 1.38673 * 120.41401 * 118.52036 * 16 13 12 18 18 C 1.38629 * 118.41701 * 179.80324 * 17 16 13 19 19 C 1.38221 * 119.16159 * 0.44613 * 18 17 16 20 20 N 1.31857 * 120.76710 * 359.79644 * 19 18 17 21 21 C 1.31882 * 121.72288 * 359.97203 * 20 19 18 22 22 N 1.48017 * 119.61719 * 180.02562 * 21 20 19 23 23 O 1.21795 * 120.00288 * 312.48208 * 22 21 20 24 24 O 1.21803 * 120.00110 * 132.48803 * 22 21 20 25 25 C 1.47573 * 91.01631 * 24.63883 * 12 11 9 26 26 H 0.96999 * 120.00286 * 179.97438 * 1 2 3 27 27 H 0.96701 * 113.99949 * 304.01611 * 10 9 7 28 28 H 1.09002 * 113.77046 * 336.34658 * 11 9 7 29 29 H 1.09000 * 113.76741 * 107.74778 * 11 9 7 30 30 H 1.07997 * 120.79127 * 359.97438 * 17 16 13 31 31 H 1.08003 * 120.42037 * 180.19969 * 18 17 16 32 32 H 1.07998 * 119.62027 * 179.76906 * 19 18 17 33 33 H 1.09005 * 113.77341 * 221.05661 * 25 12 11 34 34 H 1.09000 * 113.87130 * 89.67727 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0670 -1.2041 0.1938 9 6 1.2754 -2.4851 -0.2688 10 8 0.5391 -2.4641 -1.4933 11 6 0.4670 -3.0031 0.9346 12 7 0.9805 -4.3395 0.5764 13 16 0.4546 -5.8899 0.8257 14 8 -0.9496 -5.8097 1.0282 15 8 1.0490 -6.6838 -0.1919 16 6 1.1469 -6.4364 2.3511 17 6 0.3233 -6.7915 3.4087 18 6 0.9120 -7.2196 4.5885 19 6 2.2907 -7.2691 4.6740 20 7 3.0430 -6.9190 3.6493 21 6 2.5175 -6.5113 2.5104 22 7 3.4061 -6.1299 1.3898 23 8 4.3517 -5.3882 1.5876 24 8 3.1917 -6.5578 0.2698 25 6 2.1506 -3.7394 -0.0933 26 1 -0.4850 -0.8400 -0.0004 27 1 -0.0976 -1.7391 -1.5570 28 1 0.8273 -2.6373 1.8961 29 1 -0.6117 -2.9005 0.8161 30 1 -0.7513 -6.7384 3.3146 31 1 0.3012 -7.5070 5.4316 32 1 2.7572 -7.5979 5.5908 33 1 2.4162 -4.2247 -1.0325 34 1 3.0065 -3.5893 0.5647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256388742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:08 Heat of formation + Delta-G solvation = -20.375828 kcal Electronic energy + Delta-G solvation = -27308.354311 eV Core-core repulsion = 23146.729212 eV Total energy + Delta-G solvation = -4161.625098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43986 -40.71546 -38.93919 -37.19154 -36.52417 -35.75913 -34.41267 -33.62659 -32.77405 -32.36547 -27.83942 -27.42299 -25.65843 -25.01783 -24.39470 -23.39423 -20.13962 -19.97007 -19.14822 -18.80313 -18.45298 -17.91762 -17.63691 -16.90071 -16.60706 -16.15735 -15.67001 -15.02170 -14.80366 -14.60290 -14.34611 -13.95479 -13.69227 -13.50490 -13.26762 -12.57886 -12.19525 -12.05774 -11.96752 -11.91869 -11.54114 -11.40506 -11.18287 -11.13805 -11.05183 -10.92196 -10.86043 -10.53830 -10.51075 -10.42246 -10.20046 -9.35879 -8.96046 -8.76122 -8.14867 -6.69703 -4.48329 -0.61297 0.02360 0.26511 0.66347 0.84296 2.55351 2.90926 3.32053 3.36736 3.50022 3.54005 3.59495 3.76944 3.99644 4.19081 4.31606 4.37300 4.49214 4.81610 4.90213 5.08289 5.08957 5.46035 5.65586 5.70894 5.97144 6.07865 6.14298 6.34617 6.37887 6.61350 6.63589 7.13938 7.48692 7.63158 8.10760 8.44872 8.84100 9.22411 10.62980 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.004779 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.345461 B = 5857.917143 C = 6140.426607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.034 3.966 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.614 4.614 8 H 0.068 0.932 9 C 0.229 3.771 10 O -0.564 6.564 11 C 0.095 3.905 12 N -1.019 6.019 13 S 2.670 3.330 14 O -0.945 6.945 15 O -0.907 6.907 16 C -0.680 4.680 17 C 0.026 3.974 18 C -0.153 4.153 19 C 0.160 3.840 20 N -0.452 5.452 21 C 0.280 3.720 22 N -0.009 5.009 23 O -0.111 6.111 24 O -0.077 6.077 25 C 0.134 3.866 26 H 0.267 0.733 27 H 0.376 0.624 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.088 0.912 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 -12.200 10.946 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.653 4.653 8 H 0.087 0.913 9 C 0.185 3.815 10 O -0.371 6.371 11 C -0.030 4.030 12 N -0.862 5.862 13 S 2.754 3.246 14 O -0.935 6.935 15 O -0.897 6.897 16 C -0.762 4.762 17 C 0.000 4.000 18 C -0.174 4.174 19 C 0.003 3.997 20 N -0.165 5.165 21 C 0.060 3.940 22 N 0.519 4.481 23 O -0.331 6.331 24 O -0.300 6.300 25 C 0.010 3.990 26 H 0.079 0.921 27 H 0.225 0.775 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.193 0.807 31 H 0.184 0.816 32 H 0.205 0.795 33 H 0.107 0.893 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.605 -12.124 11.059 16.421 hybrid contribution -0.334 -1.301 0.923 1.630 sum 0.270 -13.425 11.981 17.996 Atomic orbital electron populations 1.70979 1.06914 1.30422 1.45064 1.26033 0.96252 1.03136 0.91758 0.83493 0.75025 0.74603 0.77032 1.20614 1.21155 1.20850 1.22289 0.97369 0.91268 1.54378 0.91347 1.20070 0.87936 0.92450 0.81015 1.86259 1.57334 1.54777 1.38770 1.24188 1.00165 0.76235 1.02445 1.60475 1.38437 1.19019 1.68284 1.03354 0.74444 0.73198 0.73563 1.93564 1.27546 1.86440 1.85954 1.93741 1.77354 1.67124 1.51473 1.32575 1.00858 1.14837 1.27931 1.21619 1.01558 0.87278 0.89573 1.22668 0.96701 0.98592 0.99401 1.23160 0.90701 0.90673 0.95207 1.66678 1.41486 1.09970 0.98402 1.21014 0.86147 0.97800 0.88990 1.43638 1.01423 1.01226 1.01812 1.94600 1.18061 1.30409 1.90016 1.94894 1.74872 1.54595 1.05598 1.23197 0.87774 0.91801 0.96242 0.92055 0.77467 0.89822 0.90734 0.80653 0.81567 0.79533 0.89323 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.51 13.00 55.43 0.72 -22.79 16 2 C 0.03 0.86 5.28 -17.82 -0.09 0.77 16 3 Si 1.07 22.74 29.92 -169.99 -5.09 17.65 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.29 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.61 -15.49 8.57 -34.44 -0.30 -15.79 16 8 H 0.07 1.72 7.84 -52.49 -0.41 1.30 16 9 C 0.23 5.40 1.07 -90.85 -0.10 5.30 16 10 O -0.56 -13.81 13.46 -35.23 -0.47 -14.29 16 11 C 0.09 2.01 7.51 -2.97 -0.02 1.99 16 12 N -1.02 -20.39 4.11 -118.73 -0.49 -20.88 16 13 S 2.67 48.61 5.57 -107.50 -0.60 48.01 16 14 O -0.94 -17.89 17.04 -57.17 -0.97 -18.86 16 15 O -0.91 -18.39 14.49 -67.26 -0.97 -19.37 16 16 C -0.68 -10.16 5.91 -39.44 -0.23 -10.40 16 17 C 0.03 0.28 9.66 -39.28 -0.38 -0.10 16 18 C -0.15 -1.11 10.11 -39.44 -0.40 -1.51 16 19 C 0.16 1.36 11.18 -17.55 -0.20 1.16 16 20 N -0.45 -6.16 10.36 -10.29 -0.11 -6.26 16 21 C 0.28 4.48 7.31 -146.19 -1.07 3.41 16 22 N -0.01 -0.16 3.40 32.87 0.11 -0.05 16 23 O -0.11 -2.04 18.23 -29.46 -0.54 -2.58 16 24 O -0.08 -1.50 14.24 -37.31 -0.53 -2.03 16 25 C 0.13 2.85 6.79 -2.98 -0.02 2.83 16 26 H 0.27 6.82 5.26 -40.82 -0.21 6.61 16 27 H 0.38 8.95 6.79 45.56 0.31 9.26 16 28 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 29 H 0.07 1.56 7.84 -51.93 -0.41 1.15 16 30 H 0.18 1.50 7.45 -52.49 -0.39 1.11 16 31 H 0.17 0.43 8.06 -52.48 -0.42 0.01 16 32 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.09 1.82 6.98 -51.93 -0.36 1.46 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -32.58 313.04 -8.99 -41.57 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -1.96 Total: 7.48 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.81 Total: -12.33 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.24 Total: -49.99 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -3.49 Total: -57.12 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.09 Total: 17.65 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.60 Total: 48.01 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.58 -8.99 -41.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256388742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.196 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds