Wall clock time and date at job start Tue Mar 31 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38711 * 120.11562 * 2 1 4 4 C 1.38555 * 119.52805 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.57306 * 179.97438 * 4 3 2 6 6 C 1.37877 * 120.84389 * 0.02562 * 4 3 2 7 7 C 1.40471 * 120.31465 * 359.97300 * 6 4 3 8 8 C 1.36670 * 120.11823 * 179.97438 * 2 1 3 9 9 S 1.77129 * 134.16631 * 0.03278 * 8 2 1 10 10 O 1.42098 * 107.51388 * 67.94194 * 9 8 2 11 11 O 1.42101 * 107.51464 * 292.00345 * 9 8 2 12 12 N 1.67159 * 99.86408 * 179.97438 * 9 8 2 13 13 C 1.46508 * 127.05343 * 179.97438 * 12 9 8 14 14 C 1.52993 * 109.47023 * 264.97539 * 13 12 9 15 15 H 1.08998 * 109.47575 * 60.00184 * 14 13 12 16 16 O 1.42907 * 109.47163 * 299.99825 * 14 13 12 17 17 C 1.50700 * 109.46924 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00201 * 359.97438 * 17 14 13 19 19 C 1.37888 * 120.00059 * 179.97438 * 17 14 13 20 20 N 1.31506 * 119.99816 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 119.99774 * 0.02562 * 19 17 14 22 22 H 1.48501 * 109.47164 * 89.99781 * 21 19 17 23 23 H 1.48494 * 109.47226 * 209.99619 * 21 19 17 24 24 H 1.48501 * 109.47378 * 329.99585 * 21 19 17 25 25 C 1.34069 * 105.89594 * 359.97438 * 12 9 8 26 26 O 1.21546 * 121.01659 * 180.02562 * 25 12 9 27 27 H 1.08994 * 109.46806 * 90.00407 * 1 2 3 28 28 H 1.08999 * 109.47160 * 210.00617 * 1 2 3 29 29 H 1.09001 * 109.47062 * 330.00876 * 1 2 3 30 30 H 1.08003 * 120.23672 * 0.24472 * 3 2 1 31 31 H 1.08002 * 119.84326 * 179.97438 * 6 4 3 32 32 H 1.09000 * 109.46962 * 24.97571 * 13 12 9 33 33 H 1.09007 * 109.46750 * 144.97556 * 13 12 9 34 34 H 0.96700 * 113.99818 * 300.00125 * 16 14 13 35 35 H 0.97007 * 119.99593 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2030 1.1999 0.0000 4 6 3.5885 1.1857 0.0005 5 9 4.2673 2.3538 0.0000 6 6 4.2832 -0.0053 0.0005 7 6 3.5930 -1.2287 0.0006 8 6 2.1928 -1.1822 0.0005 9 16 1.7130 -2.8873 0.0006 10 8 1.1080 -3.1613 -1.2556 11 8 1.1079 -3.1612 1.2567 12 7 3.2208 -3.6090 0.0007 13 6 3.5122 -5.0448 0.0013 14 6 3.7377 -5.5188 1.4384 15 1 2.8408 -5.3299 2.0283 16 8 4.8400 -4.8088 2.0068 17 6 4.0381 -6.9955 1.4389 18 1 4.0650 -7.5415 0.5075 19 6 4.2785 -7.6498 2.6286 20 7 4.5401 -8.9386 2.6291 21 14 4.2311 -6.7057 4.2397 22 1 2.8520 -6.7339 4.7897 23 1 5.1636 -7.3343 5.2094 24 1 4.6401 -5.2982 4.0010 25 6 4.1087 -2.6045 0.0001 26 8 5.3040 -2.8251 -0.0004 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 1.6688 2.1385 0.0040 31 1 5.3632 0.0025 0.0006 32 1 2.6715 -5.5863 -0.4323 33 1 4.4092 -5.2337 -0.5886 34 1 5.6734 -4.9310 1.5319 35 1 4.7089 -9.3989 3.4662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001421410779.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:07 Heat of formation + Delta-G solvation = -144.334673 kcal Electronic energy + Delta-G solvation = -26495.465670 eV Core-core repulsion = 22308.545351 eV Total energy + Delta-G solvation = -4186.920319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.58250 -41.02087 -39.09648 -37.47915 -36.59522 -36.12335 -35.01600 -33.42881 -32.31204 -32.16148 -29.26000 -27.78234 -25.98450 -24.28702 -23.01849 -21.72237 -20.99886 -19.41894 -18.67890 -18.06674 -17.61065 -17.06288 -16.80449 -16.60786 -16.17958 -15.73948 -15.23327 -15.10043 -14.80282 -14.64657 -14.37639 -14.13341 -14.07316 -14.01553 -13.80729 -12.87992 -12.72383 -12.67403 -12.48465 -12.35192 -12.28039 -12.15423 -11.77934 -11.37753 -11.17880 -11.14809 -10.78086 -10.51107 -10.35622 -9.78632 -9.70875 -9.57018 -9.11596 -8.67628 -8.31663 -6.19334 -4.33459 -0.28523 -0.20455 0.33463 2.04583 2.10612 2.86898 2.90594 2.98578 3.39829 3.48804 3.55348 3.75652 3.78968 4.23301 4.43755 4.50176 4.51135 4.59706 4.75658 4.92452 4.95585 5.07253 5.13984 5.24875 5.32490 5.50557 5.56213 5.57267 5.77594 5.93177 6.04728 6.16116 6.26409 7.14890 7.30061 7.45652 8.18972 8.72807 8.96510 9.43781 10.90257 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.004376 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.979291 B = 6397.276267 C = 6953.731549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 C -0.142 4.142 4 C 0.148 3.852 5 F -0.123 7.123 6 C -0.089 4.089 7 C -0.059 4.059 8 C -0.644 4.644 9 S 2.656 3.344 10 O -0.925 6.925 11 O -0.913 6.913 12 N -0.905 5.905 13 C 0.115 3.885 14 C 0.175 3.825 15 H 0.067 0.933 16 O -0.573 6.573 17 C -0.569 4.569 18 H 0.078 0.922 19 C 0.090 3.910 20 N -0.887 5.887 21 Si 0.867 3.133 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.216 1.216 25 C 0.537 3.463 26 O -0.450 6.450 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.361 0.639 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 21.955 -7.215 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.069 3.931 3 C -0.162 4.162 4 C 0.128 3.872 5 F -0.102 7.102 6 C -0.110 4.110 7 C -0.064 4.064 8 C -0.730 4.730 9 S 2.745 3.255 10 O -0.914 6.914 11 O -0.903 6.903 12 N -0.750 5.750 13 C -0.005 4.005 14 C 0.116 3.884 15 H 0.085 0.915 16 O -0.379 6.379 17 C -0.607 4.607 18 H 0.096 0.904 19 C -0.115 4.115 20 N -0.523 5.523 21 Si 0.693 3.307 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.139 1.139 25 C 0.321 3.679 26 O -0.319 6.319 27 H 0.116 0.884 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.209 0.791 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.142 21.382 -6.705 23.520 hybrid contribution 1.184 0.804 0.466 1.505 sum -5.958 22.186 -6.239 23.804 Atomic orbital electron populations 1.21214 0.88920 1.05154 1.04698 1.18544 0.96457 0.89205 0.88941 1.21528 0.92184 0.99738 1.02752 1.17461 0.89976 0.81248 0.98504 1.91588 1.80071 1.45302 1.93196 1.20907 1.02097 0.88662 0.99288 1.19936 0.92437 0.93877 1.00188 1.30778 1.03317 1.22396 1.16466 1.03858 0.72442 0.73712 0.75444 1.93679 1.72407 1.82878 1.42467 1.93716 1.72359 1.82354 1.41838 1.56197 1.25765 1.14764 1.78318 1.22686 1.03933 0.70691 1.03166 1.20275 0.88378 0.92120 0.87619 0.91525 1.86674 1.20161 1.73889 1.57177 1.21283 1.52389 0.91245 0.95787 0.90351 1.24912 0.92299 0.94482 0.99855 1.69933 1.45574 1.08898 1.27856 0.87069 0.77849 0.84033 0.81762 1.21022 1.22059 1.13868 1.17947 0.88386 0.83762 0.77809 1.90761 1.14790 1.84723 1.41578 0.88358 0.90224 0.88969 0.82440 0.82292 0.88295 0.88141 0.79133 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.96 36.01 0.36 -0.61 16 2 C 0.07 0.67 5.85 -105.01 -0.61 0.05 16 3 C -0.14 -1.12 9.74 -39.29 -0.38 -1.50 16 4 C 0.15 1.37 7.25 -39.60 -0.29 1.09 16 5 F -0.12 -1.11 17.25 2.25 0.04 -1.07 16 6 C -0.09 -0.98 10.00 -38.87 -0.39 -1.37 16 7 C -0.06 -0.80 6.08 -104.84 -0.64 -1.43 16 8 C -0.64 -8.09 6.22 -39.45 -0.25 -8.34 16 9 S 2.66 40.63 5.86 -107.50 -0.63 40.00 16 10 O -0.92 -14.67 18.08 -56.98 -1.03 -15.70 16 11 O -0.91 -16.09 18.08 -56.98 -1.03 -17.12 16 12 N -0.90 -15.45 3.03 -64.38 -0.20 -15.64 16 13 C 0.11 2.15 5.69 -4.04 -0.02 2.13 16 14 C 0.18 4.03 2.58 -27.89 -0.07 3.96 16 15 H 0.07 1.60 7.57 -51.93 -0.39 1.21 16 16 O -0.57 -13.21 8.93 -41.53 -0.37 -13.58 16 17 C -0.57 -15.28 9.34 -34.44 -0.32 -15.60 16 18 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 20 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 21 Si 0.87 21.90 26.99 -169.99 -4.59 17.31 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.22 -5.41 5.31 56.52 0.30 -5.11 16 25 C 0.54 8.82 7.19 -13.06 -0.09 8.73 16 26 O -0.45 -8.24 16.51 -0.97 -0.02 -8.26 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.60 7.84 -51.93 -0.41 0.20 16 29 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.10 1.79 8.04 -51.93 -0.42 1.38 16 34 H 0.36 7.73 8.77 45.56 0.40 8.13 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -34.19 322.60 -7.58 -41.76 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.58 Total: 3.62 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.81 Total: -10.44 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.58 Total: -41.38 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -2.45 Total: -54.66 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.31 kcal Atomic # 16 Polarization: 40.63 SS G_CDS: -0.63 Total: 40.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.19 -7.58 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421410779.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.572 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds