Wall clock time and date at job start Tue Mar 31 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46959 * 2 1 4 4 C 1.53004 * 109.47497 * 119.99959 * 2 1 3 5 5 N 1.46503 * 109.46782 * 305.00231 * 4 2 1 6 6 S 1.65604 * 119.99803 * 165.98564 * 5 4 2 7 7 O 1.42103 * 106.40089 * 176.38830 * 6 5 4 8 8 O 1.42101 * 106.40224 * 309.30599 * 6 5 4 9 9 C 1.76197 * 107.21627 * 62.84583 * 6 5 4 10 10 C 1.37644 * 120.12882 * 245.81114 * 9 6 5 11 11 C 1.38613 * 120.24724 * 179.97438 * 10 9 6 12 12 C 1.38655 * 120.50361 * 0.02562 * 11 10 9 13 13 C 1.37597 * 120.24782 * 0.02562 * 12 11 10 14 14 C 1.40701 * 120.12644 * 65.54287 * 9 6 5 15 15 C 1.41393 * 120.24387 * 359.97438 * 14 9 6 16 16 H 1.07995 * 119.99841 * 331.42517 * 15 14 9 17 17 C 1.39948 * 119.99706 * 151.42702 * 15 14 9 18 18 N 1.30816 * 120.00283 * 348.51412 * 17 15 14 19 19 Si 1.86801 * 119.99676 * 168.52114 * 17 15 14 20 20 H 1.48500 * 109.47194 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47498 * 119.99796 * 19 17 15 22 22 H 1.48505 * 109.46816 * 239.99483 * 19 17 15 23 23 C 1.50702 * 109.47176 * 240.00280 * 2 1 3 24 24 O 1.20827 * 119.99370 * 264.99646 * 23 2 1 25 25 O 1.34221 * 120.00273 * 84.99936 * 23 2 1 26 26 H 1.09003 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47263 * 299.99911 * 1 2 3 28 28 H 1.08994 * 109.47582 * 60.00191 * 1 2 3 29 29 H 0.96700 * 113.99782 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46877 * 64.99998 * 4 2 1 31 31 H 1.08991 * 109.47525 * 185.00195 * 4 2 1 32 32 H 0.96995 * 120.00036 * 345.99017 * 5 4 2 33 33 H 1.07997 * 119.87569 * 0.02562 * 10 9 6 34 34 H 1.07994 * 119.74489 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.87975 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.12792 * 179.97438 * 13 12 11 37 37 H 0.96996 * 120.00555 * 180.02562 * 18 17 15 38 38 H 0.96698 * 117.00177 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.4559 -0.1036 2.4424 6 16 1.5457 -0.8776 3.9037 7 8 0.9731 0.0035 4.8603 8 8 1.0754 -2.2008 3.6864 9 6 3.2531 -1.0177 4.3155 10 6 3.8483 -2.2570 4.3823 11 6 5.1915 -2.3700 4.7056 12 6 5.9504 -1.2391 4.9656 13 6 5.3761 0.0099 4.9057 14 6 4.0148 0.1372 4.5719 15 6 3.4156 1.4159 4.5002 16 1 2.5761 1.5827 3.8416 17 6 3.9106 2.4654 5.2826 18 7 4.7702 2.2202 6.2377 19 14 3.3435 4.2164 4.9631 20 1 2.3767 4.2257 3.8360 21 1 2.6886 4.7549 6.1822 22 1 4.5151 5.0606 4.6167 23 6 2.0323 -0.7104 -1.2305 24 8 2.3197 -1.8827 -1.1762 25 8 2.1605 -0.0408 -2.3867 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.9703 1.4236 0.0004 30 1 1.7517 -1.7715 1.2056 31 1 3.1263 -0.6443 1.2952 32 1 1.0165 0.7586 2.3764 33 1 3.2668 -3.1446 4.1813 34 1 5.6503 -3.3464 4.7553 35 1 6.9961 -1.3388 5.2161 36 1 5.9689 0.8894 5.1090 37 1 5.1130 2.9476 6.7802 38 1 2.4862 -0.5390 -3.1488 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573583990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:15 Heat of formation + Delta-G solvation = -197.334603 kcal Electronic energy + Delta-G solvation = -27138.063089 eV Core-core repulsion = 23072.304825 eV Total energy + Delta-G solvation = -4065.758263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80310 -37.87992 -37.60526 -36.39531 -36.24609 -34.87473 -34.31200 -33.88699 -31.07493 -30.23322 -29.57709 -26.55136 -25.55597 -24.27394 -21.68975 -21.17218 -20.62225 -19.07283 -18.52932 -17.74881 -17.61395 -17.06154 -16.36496 -16.13524 -15.49643 -15.26977 -14.96688 -14.72244 -14.34061 -14.18162 -13.94180 -13.30690 -13.19794 -12.88692 -12.78195 -12.64209 -12.24505 -11.96884 -11.89070 -11.75231 -11.56587 -11.38336 -11.28643 -11.18854 -11.13090 -11.04649 -10.90197 -10.71315 -10.49950 -10.13878 -9.91987 -9.53413 -9.46774 -8.88131 -8.06656 -7.62911 -7.05095 -4.78869 1.43979 1.89015 2.30564 2.67828 2.70579 2.97024 3.03688 3.09201 3.76504 3.82187 3.96245 4.37798 4.39492 4.63852 4.70510 4.94018 5.25203 5.46708 5.50696 5.57596 5.67879 5.72492 5.94938 6.01762 6.11595 6.22126 6.23246 6.39408 6.75173 6.93083 7.05739 7.25430 7.28541 7.44676 7.48983 7.64556 7.67479 7.78825 7.86797 8.26728 8.47748 8.62340 9.87494 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.005577 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.544086 B = 5019.849010 C = 5866.660057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.147 3.853 3 O -0.531 6.531 4 C 0.110 3.890 5 N -1.116 6.116 6 S 2.701 3.299 7 O -0.960 6.960 8 O -0.995 6.995 9 C -0.777 4.777 10 C -0.003 4.003 11 C -0.250 4.250 12 C -0.076 4.076 13 C -0.159 4.159 14 C 0.185 3.815 15 C -0.444 4.444 16 H 0.089 0.911 17 C 0.080 3.920 18 N -0.776 5.776 19 Si 0.916 3.084 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.270 1.270 23 C 0.457 3.543 24 O -0.501 6.501 25 O -0.504 6.504 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.388 0.612 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.416 0.584 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.287 0.713 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 0.615 -12.315 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.103 3.897 3 O -0.337 6.337 4 C -0.018 4.018 5 N -0.874 5.874 6 S 2.798 3.202 7 O -0.950 6.950 8 O -0.986 6.986 9 C -0.873 4.873 10 C -0.023 4.023 11 C -0.270 4.270 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.180 3.820 15 C -0.472 4.472 16 H 0.107 0.893 17 C -0.141 4.141 18 N -0.399 5.399 19 Si 0.739 3.261 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.195 1.195 23 C 0.297 3.703 24 O -0.388 6.388 25 O -0.315 6.315 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.237 0.763 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.806 0.292 -11.280 11.908 hybrid contribution 1.480 0.663 -0.606 1.731 sum -2.326 0.955 -11.886 12.149 Atomic orbital electron populations 1.21817 0.89264 1.04029 1.04788 1.21229 0.97504 0.83130 0.87885 1.86620 1.28005 1.22744 1.96323 1.21576 0.98703 0.98024 0.83464 1.55677 1.73297 1.35011 1.23376 1.01119 0.75075 0.72242 0.71732 1.93557 1.77858 1.65900 1.57705 1.93457 1.80856 1.38575 1.85674 1.29837 1.22945 0.99435 1.35067 1.20270 0.94509 0.94693 0.92815 1.20497 0.94890 0.96982 1.14655 1.20912 0.97718 0.93599 0.97307 1.21528 0.95315 0.96267 1.04721 1.17021 0.90949 0.90206 0.83788 1.19904 1.13197 0.93609 1.20482 0.89280 1.25965 0.93063 1.02145 0.92967 1.69781 1.22455 1.35178 1.12500 0.86107 0.79704 0.80041 0.80235 1.17547 1.19373 1.19532 1.24452 0.74355 0.86095 0.85393 1.90775 1.45331 1.17420 1.85296 1.84615 1.78935 1.47323 1.20649 0.89904 0.89286 0.90695 0.76277 0.88349 0.90528 0.74940 0.87379 0.88728 0.88826 0.85669 0.90165 0.73405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.60 37.16 0.32 -1.21 16 2 C 0.15 1.77 1.02 -91.77 -0.09 1.68 16 3 O -0.53 -6.21 12.58 -49.12 -0.62 -6.83 16 4 C 0.11 1.62 4.97 -4.04 -0.02 1.60 16 5 N -1.12 -18.51 4.56 -10.61 -0.05 -18.56 16 6 S 2.70 57.42 4.96 -107.50 -0.53 56.88 16 7 O -0.96 -23.25 16.52 -57.17 -0.94 -24.20 16 8 O -1.00 -22.17 16.53 -57.17 -0.94 -23.12 16 9 C -0.78 -18.20 5.90 -38.87 -0.23 -18.43 16 10 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 11 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 12 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 13 C -0.16 -3.84 8.66 -38.87 -0.34 -4.17 16 14 C 0.19 4.59 5.55 -106.82 -0.59 4.00 16 15 C -0.44 -10.77 7.63 -37.74 -0.29 -11.06 16 16 H 0.09 2.01 5.82 -52.49 -0.31 1.70 16 17 C 0.08 1.88 5.24 -17.34 -0.09 1.78 16 18 N -0.78 -18.75 10.85 55.55 0.60 -18.15 16 19 Si 0.92 17.65 29.57 -169.99 -5.03 12.62 16 20 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 23 C 0.46 5.37 7.17 36.01 0.26 5.63 16 24 O -0.50 -7.27 16.74 -18.75 -0.31 -7.58 16 25 O -0.50 -4.53 13.18 -44.40 -0.59 -5.12 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.95 6.87 -51.93 -0.36 0.60 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.39 3.57 9.04 45.56 0.41 3.98 16 30 H 0.10 1.51 7.37 -51.93 -0.38 1.13 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.42 6.25 7.38 -34.47 -0.25 5.99 16 33 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.13 3.06 6.21 -52.49 -0.33 2.73 16 37 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 38 H 0.41 1.88 9.10 45.56 0.41 2.29 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -32.89 339.11 -7.98 -40.87 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -2.43 Total: 16.60 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -2.24 Total: -28.54 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.55 Total: -36.71 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -3.41 Total: -66.84 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.53 Total: 56.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.89 -7.98 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573583990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.467 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds