Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47339 * 2 1 4 4 C 1.53000 * 109.47376 * 239.99480 * 2 1 3 5 5 N 1.46500 * 109.46656 * 61.39547 * 4 2 1 6 6 S 1.65603 * 119.99861 * 162.20796 * 5 4 2 7 7 O 1.42098 * 106.40384 * 313.36725 * 6 5 4 8 8 O 1.42100 * 106.40280 * 180.44923 * 6 5 4 9 9 C 1.76202 * 107.21707 * 66.90664 * 6 5 4 10 10 C 1.37640 * 120.12591 * 113.31460 * 9 6 5 11 11 C 1.38608 * 120.24552 * 180.32052 * 10 9 6 12 12 C 1.38658 * 120.50140 * 359.66989 * 11 10 9 13 13 C 1.37590 * 120.25047 * 0.02562 * 12 11 10 14 14 C 1.40687 * 120.12651 * 293.00647 * 9 6 5 15 15 C 1.41395 * 120.24914 * 359.97438 * 14 9 6 16 16 H 1.08005 * 119.99466 * 325.47004 * 15 14 9 17 17 C 1.39941 * 120.00667 * 145.46904 * 15 14 9 18 18 N 1.30826 * 119.99907 * 344.98994 * 17 15 14 19 19 Si 1.86794 * 120.00305 * 164.99642 * 17 15 14 20 20 H 1.48506 * 109.47378 * 183.39132 * 19 17 15 21 21 H 1.48500 * 109.46971 * 303.38995 * 19 17 15 22 22 H 1.48493 * 109.47555 * 63.39147 * 19 17 15 23 23 C 1.50701 * 109.47144 * 119.99665 * 2 1 3 24 24 O 1.20826 * 120.00255 * 94.63333 * 23 2 1 25 25 O 1.34235 * 120.00217 * 274.63436 * 23 2 1 26 26 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46868 * 300.00499 * 1 2 3 28 28 H 1.09000 * 109.46788 * 60.00351 * 1 2 3 29 29 H 0.96699 * 114.00073 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47057 * 301.39865 * 4 2 1 31 31 H 1.08992 * 109.47239 * 181.39180 * 4 2 1 32 32 H 0.97006 * 120.00139 * 342.21155 * 5 4 2 33 33 H 1.08003 * 119.87728 * 0.02562 * 10 9 6 34 34 H 1.08000 * 119.75090 * 179.69327 * 11 10 9 35 35 H 1.08007 * 119.87655 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.13082 * 180.02562 * 13 12 11 37 37 H 0.97006 * 119.99862 * 353.60300 * 18 17 15 38 38 H 0.96698 * 117.00110 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.5794 -0.0116 -2.4451 6 16 2.3164 -0.2814 -3.9033 7 8 3.7157 -0.2258 -3.6621 8 8 1.6567 0.5518 -4.8466 9 6 1.9575 -1.9422 -4.3698 10 6 1.1654 -2.1960 -5.4665 11 6 0.8761 -3.5014 -5.8317 12 6 1.3852 -4.5654 -5.1028 13 6 2.1843 -4.3354 -4.0066 14 6 2.4847 -3.0141 -3.6265 15 6 3.3054 -2.7656 -2.5022 16 1 3.9741 -1.9175 -2.4987 17 6 3.2513 -3.6186 -1.3941 18 7 2.2567 -4.4583 -1.2630 19 14 4.5989 -3.5580 -0.1020 20 1 4.3542 -4.6090 0.9182 21 1 5.9152 -3.7925 -0.7484 22 1 4.5989 -2.2245 0.5513 23 6 2.0324 -0.7103 1.2305 24 8 2.3134 -1.8843 1.1780 25 8 2.1676 -0.0389 2.3850 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9704 1.4236 -0.0004 30 1 1.6564 -1.7415 -1.2617 31 1 3.1297 -0.7430 -1.2367 32 1 0.8427 0.6164 -2.3828 33 1 0.7640 -1.3748 -6.0417 34 1 0.2497 -3.6912 -6.6907 35 1 1.1536 -5.5786 -5.3966 36 1 2.5801 -5.1656 -3.4405 37 1 1.5105 -4.4268 -1.8820 38 1 2.4937 -0.5370 3.1469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573583991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -193.718604 kcal Electronic energy + Delta-G solvation = -28119.152406 eV Core-core repulsion = 24053.550944 eV Total energy + Delta-G solvation = -4065.601462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50857 -38.02578 -37.60677 -36.40338 -36.06797 -34.99093 -34.43456 -33.79446 -30.94428 -30.26033 -29.47592 -26.45206 -25.34500 -23.98086 -21.93758 -21.22362 -20.37416 -18.94566 -18.48655 -18.16875 -17.36688 -17.18099 -16.33661 -15.90338 -15.35639 -15.03134 -14.77529 -14.52487 -14.27306 -14.07672 -13.93248 -13.65685 -13.25797 -12.94934 -12.52411 -12.50329 -12.26187 -12.04199 -11.69747 -11.64262 -11.51605 -11.46398 -11.31515 -11.23399 -11.01818 -10.95869 -10.53910 -10.50524 -10.34101 -9.97121 -9.82696 -9.38224 -9.24881 -8.77508 -8.28800 -7.80287 -7.36780 -4.88145 1.39204 2.16029 2.21515 2.61654 2.93220 3.14845 3.21786 3.34511 3.88630 3.95728 4.08968 4.36110 4.57319 4.69310 4.88887 5.10865 5.18760 5.39450 5.59879 5.72491 5.86407 5.93368 6.00724 6.03367 6.20592 6.24873 6.45760 6.55353 6.57702 6.82974 7.11503 7.25080 7.32440 7.39469 7.51759 7.56367 7.64494 7.79294 7.94428 7.98451 8.34022 8.55998 9.86454 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.007375 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.721485 B = 3795.616549 C = 5072.058458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.139 3.861 3 O -0.537 6.537 4 C 0.113 3.887 5 N -1.114 6.114 6 S 2.711 3.289 7 O -0.973 6.973 8 O -0.995 6.995 9 C -0.778 4.778 10 C 0.010 3.990 11 C -0.256 4.256 12 C -0.058 4.058 13 C -0.204 4.204 14 C 0.169 3.831 15 C -0.538 4.538 16 H 0.115 0.885 17 C 0.053 3.947 18 N -0.778 5.778 19 Si 1.071 2.929 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.445 3.555 24 O -0.474 6.474 25 O -0.511 6.511 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.385 0.615 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.409 0.591 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.299 0.701 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 5.434 6.529 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.095 3.905 3 O -0.343 6.343 4 C -0.014 4.014 5 N -0.871 5.871 6 S 2.808 3.192 7 O -0.963 6.963 8 O -0.986 6.986 9 C -0.873 4.873 10 C -0.010 4.010 11 C -0.276 4.276 12 C -0.077 4.077 13 C -0.224 4.224 14 C 0.165 3.835 15 C -0.565 4.565 16 H 0.132 0.868 17 C -0.171 4.171 18 N -0.400 5.400 19 Si 0.895 3.105 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.195 1.195 23 C 0.284 3.716 24 O -0.359 6.359 25 O -0.322 6.322 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.233 0.767 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.243 0.757 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.863 5.201 7.127 9.017 hybrid contribution -0.451 -0.466 -0.867 1.083 sum -2.315 4.734 6.261 8.183 Atomic orbital electron populations 1.21789 0.89786 1.03949 1.04185 1.21453 0.97172 0.82790 0.89035 1.86549 1.27605 1.23580 1.96545 1.22285 1.01091 0.96435 0.81566 1.55452 1.51190 1.56714 1.23751 1.00756 0.73287 0.73990 0.71184 1.93473 1.30693 1.87471 1.84659 1.93464 1.76758 1.67778 1.60583 1.29863 1.22537 1.20577 1.14278 1.20326 0.91423 0.96497 0.92752 1.20505 1.10086 0.92852 1.04151 1.20875 0.95138 0.97182 0.94512 1.21415 1.04592 0.96999 0.99385 1.17074 0.86695 0.90248 0.89530 1.21508 1.20387 1.14754 0.99868 0.86770 1.26950 1.00376 0.90250 0.99559 1.70483 1.05723 1.28316 1.35489 0.83546 0.73684 0.78232 0.74999 1.19854 1.20863 1.19472 1.24357 0.75504 0.86571 0.85201 1.90802 1.43600 1.16768 1.84738 1.84590 1.79390 1.47414 1.20842 0.89845 0.90898 0.89878 0.76709 0.87376 0.88805 0.75731 0.87156 0.88382 0.88518 0.87022 0.88612 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.67 37.16 0.32 -1.44 16 2 C 0.14 2.02 1.05 -91.77 -0.10 1.93 16 3 O -0.54 -7.10 12.60 -49.24 -0.62 -7.72 16 4 C 0.11 2.00 2.88 -4.04 -0.01 1.98 16 5 N -1.11 -19.29 5.71 -10.62 -0.06 -19.35 16 6 S 2.71 56.87 5.44 -107.50 -0.58 56.28 16 7 O -0.97 -22.63 14.98 -57.17 -0.86 -23.49 16 8 O -0.99 -21.87 16.97 -57.17 -0.97 -22.84 16 9 C -0.78 -17.85 5.97 -38.88 -0.23 -18.08 16 10 C 0.01 0.22 9.53 -39.66 -0.38 -0.16 16 11 C -0.26 -5.36 10.05 -39.29 -0.39 -5.75 16 12 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 13 C -0.20 -4.80 7.76 -38.87 -0.30 -5.11 16 14 C 0.17 4.10 5.19 -106.83 -0.55 3.55 16 15 C -0.54 -12.83 4.69 -37.74 -0.18 -13.01 16 16 H 0.11 2.77 4.46 -52.48 -0.23 2.54 16 17 C 0.05 1.23 4.00 -17.34 -0.07 1.16 16 18 N -0.78 -18.68 12.52 55.55 0.70 -17.99 16 19 Si 1.07 21.82 27.58 -169.99 -4.69 17.13 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.10 6.38 56.52 0.36 -4.74 16 23 C 0.44 6.56 7.17 36.01 0.26 6.82 16 24 O -0.47 -8.49 13.54 -18.75 -0.25 -8.74 16 25 O -0.51 -5.87 13.17 -44.47 -0.59 -6.46 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.96 6.64 -51.93 -0.34 0.61 16 29 H 0.38 4.16 9.04 45.56 0.41 4.57 16 30 H 0.11 2.16 5.71 -51.93 -0.30 1.87 16 31 H 0.09 1.77 6.02 -51.93 -0.31 1.46 16 32 H 0.41 6.01 7.13 -34.47 -0.25 5.76 16 33 H 0.11 2.22 7.32 -52.48 -0.38 1.84 16 34 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.11 2.66 6.77 -52.49 -0.36 2.30 16 37 H 0.30 7.28 6.25 -40.82 -0.25 7.03 16 38 H 0.40 2.96 9.10 45.56 0.41 3.37 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -30.92 320.96 -7.25 -38.18 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -2.13 Total: 19.90 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.03 Total: -29.74 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.63 Total: -37.34 kcal Atomic # 8 Polarization: -65.96 SS G_CDS: -3.29 Total: -69.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.69 Total: 17.13 kcal Atomic # 16 Polarization: 56.87 SS G_CDS: -0.58 Total: 56.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.92 -7.25 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573583991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.542 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds