Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47339 * 2 1 4 4 C 1.53000 * 109.47376 * 239.99480 * 2 1 3 5 5 N 1.46500 * 109.46656 * 61.39547 * 4 2 1 6 6 S 1.65603 * 119.99861 * 162.20796 * 5 4 2 7 7 O 1.42098 * 106.40384 * 313.36725 * 6 5 4 8 8 O 1.42100 * 106.40280 * 180.44923 * 6 5 4 9 9 C 1.76202 * 107.21707 * 66.90664 * 6 5 4 10 10 C 1.37640 * 120.12591 * 113.31460 * 9 6 5 11 11 C 1.38608 * 120.24552 * 180.32052 * 10 9 6 12 12 C 1.38658 * 120.50140 * 359.66989 * 11 10 9 13 13 C 1.37590 * 120.25047 * 0.02562 * 12 11 10 14 14 C 1.40687 * 120.12651 * 293.00647 * 9 6 5 15 15 C 1.41395 * 120.24914 * 359.97438 * 14 9 6 16 16 H 1.08005 * 119.99466 * 325.47004 * 15 14 9 17 17 C 1.39941 * 120.00667 * 145.46904 * 15 14 9 18 18 N 1.30826 * 119.99907 * 344.98994 * 17 15 14 19 19 Si 1.86794 * 120.00305 * 164.99642 * 17 15 14 20 20 H 1.48506 * 109.47378 * 183.39132 * 19 17 15 21 21 H 1.48500 * 109.46971 * 303.38995 * 19 17 15 22 22 H 1.48493 * 109.47555 * 63.39147 * 19 17 15 23 23 C 1.50701 * 109.47144 * 119.99665 * 2 1 3 24 24 O 1.20826 * 120.00255 * 94.63333 * 23 2 1 25 25 O 1.34235 * 120.00217 * 274.63436 * 23 2 1 26 26 H 1.08999 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46868 * 300.00499 * 1 2 3 28 28 H 1.09000 * 109.46788 * 60.00351 * 1 2 3 29 29 H 0.96699 * 114.00073 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47057 * 301.39865 * 4 2 1 31 31 H 1.08992 * 109.47239 * 181.39180 * 4 2 1 32 32 H 0.97006 * 120.00139 * 342.21155 * 5 4 2 33 33 H 1.08003 * 119.87728 * 0.02562 * 10 9 6 34 34 H 1.08000 * 119.75090 * 179.69327 * 11 10 9 35 35 H 1.08007 * 119.87655 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.13082 * 180.02562 * 13 12 11 37 37 H 0.97006 * 119.99862 * 353.60300 * 18 17 15 38 38 H 0.96698 * 117.00110 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.5794 -0.0116 -2.4451 6 16 2.3164 -0.2814 -3.9033 7 8 3.7157 -0.2258 -3.6621 8 8 1.6567 0.5518 -4.8466 9 6 1.9575 -1.9422 -4.3698 10 6 1.1654 -2.1960 -5.4665 11 6 0.8761 -3.5014 -5.8317 12 6 1.3852 -4.5654 -5.1028 13 6 2.1843 -4.3354 -4.0066 14 6 2.4847 -3.0141 -3.6265 15 6 3.3054 -2.7656 -2.5022 16 1 3.9741 -1.9175 -2.4987 17 6 3.2513 -3.6186 -1.3941 18 7 2.2567 -4.4583 -1.2630 19 14 4.5989 -3.5580 -0.1020 20 1 4.3542 -4.6090 0.9182 21 1 5.9152 -3.7925 -0.7484 22 1 4.5989 -2.2245 0.5513 23 6 2.0324 -0.7103 1.2305 24 8 2.3134 -1.8843 1.1780 25 8 2.1676 -0.0389 2.3850 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9704 1.4236 -0.0004 30 1 1.6564 -1.7415 -1.2617 31 1 3.1297 -0.7430 -1.2367 32 1 0.8427 0.6164 -2.3828 33 1 0.7640 -1.3748 -6.0417 34 1 0.2497 -3.6912 -6.6907 35 1 1.1536 -5.5786 -5.3966 36 1 2.5801 -5.1656 -3.4405 37 1 1.5105 -4.4268 -1.8820 38 1 2.4937 -0.5370 3.1469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573583991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -219.633754 kcal Electronic energy + Delta-G solvation = -28120.276172 eV Core-core repulsion = 24053.550944 eV Total energy + Delta-G solvation = -4066.725227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65378 -39.71518 -38.82282 -38.12248 -37.16238 -36.75261 -36.02541 -35.26760 -32.11985 -31.97292 -31.21545 -27.81149 -26.95111 -25.20726 -23.64527 -22.96805 -21.52281 -20.50584 -19.99496 -19.55604 -18.83780 -18.42847 -17.94227 -17.17018 -16.91803 -16.62763 -16.25800 -16.00285 -15.68073 -15.56319 -15.39047 -15.01357 -14.91294 -14.52546 -14.11061 -13.70509 -13.52637 -13.30233 -13.18523 -13.10155 -13.05202 -13.00226 -12.87572 -12.75513 -12.74479 -12.41421 -12.18781 -12.04220 -11.68076 -11.53020 -11.23005 -11.01765 -10.94603 -10.29864 -10.02136 -9.56579 -9.16448 -6.68144 -0.26404 0.41128 0.86652 1.06119 1.49026 1.59549 1.71952 1.85257 2.29781 2.38103 2.63942 2.89687 3.01561 3.35693 3.44708 3.70368 3.74293 4.21600 4.24221 4.33587 4.43732 4.61525 4.69149 4.73975 4.76469 4.82297 5.02819 5.08022 5.09688 5.37489 5.50912 5.57842 5.59162 5.79517 5.85773 6.00627 6.16589 6.20367 6.46908 6.57683 6.79229 6.99178 8.06127 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.007375 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.721485 B = 3795.616549 C = 5072.058458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.145 3.855 3 O -0.534 6.534 4 C 0.115 3.885 5 N -1.097 6.097 6 S 2.730 3.270 7 O -0.997 6.997 8 O -1.004 7.004 9 C -0.794 4.794 10 C -0.005 4.005 11 C -0.253 4.253 12 C -0.056 4.056 13 C -0.229 4.229 14 C 0.149 3.851 15 C -0.550 4.550 16 H 0.105 0.895 17 C 0.040 3.960 18 N -0.796 5.796 19 Si 1.090 2.910 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.250 1.250 23 C 0.452 3.548 24 O -0.511 6.511 25 O -0.498 6.498 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.422 0.578 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.291 0.709 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 6.449 6.801 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.100 3.900 3 O -0.341 6.341 4 C -0.012 4.012 5 N -0.858 5.858 6 S 2.826 3.174 7 O -0.987 6.987 8 O -0.995 6.995 9 C -0.887 4.887 10 C -0.024 4.024 11 C -0.273 4.273 12 C -0.074 4.074 13 C -0.249 4.249 14 C 0.145 3.855 15 C -0.577 4.577 16 H 0.123 0.877 17 C -0.181 4.181 18 N -0.418 5.418 19 Si 0.912 3.088 20 H -0.203 1.203 21 H -0.204 1.204 22 H -0.174 1.174 23 C 0.293 3.707 24 O -0.399 6.399 25 O -0.312 6.312 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.245 0.755 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.260 0.740 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -2.676 6.238 7.404 10.044 hybrid contribution -0.259 -0.725 -1.001 1.263 sum -2.935 5.513 6.402 8.944 Atomic orbital electron populations 1.21849 0.88292 1.04069 1.05641 1.21261 0.98255 0.82825 0.87640 1.86543 1.28763 1.22431 1.96383 1.22091 1.00216 0.95927 0.82972 1.55022 1.51435 1.56701 1.22663 1.00086 0.72701 0.73122 0.71503 1.93439 1.32527 1.87573 1.85195 1.93442 1.76799 1.67714 1.61497 1.30221 1.22458 1.21328 1.14707 1.20679 0.91373 0.97725 0.92657 1.20935 1.09462 0.92249 1.04607 1.21232 0.93801 0.99024 0.93392 1.21451 1.06234 0.96542 1.00637 1.17333 0.87170 0.90984 0.90051 1.21435 1.20947 1.15018 1.00331 0.87714 1.27591 1.00793 0.89542 1.00149 1.70543 1.06077 1.29441 1.35733 0.83342 0.72476 0.79124 0.73899 1.20304 1.20449 1.17394 1.24285 0.74587 0.85924 0.85947 1.90797 1.45381 1.18272 1.85415 1.84531 1.78826 1.47092 1.20733 0.90424 0.89022 0.88881 0.75483 0.89712 0.90298 0.74036 0.85509 0.85040 0.85564 0.88232 0.89582 0.71294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.67 71.98 0.62 -2.67 16 2 C 0.14 3.98 1.05 -11.54 -0.01 3.97 16 3 O -0.53 -12.93 12.60 -135.59 -1.71 -14.63 16 4 C 0.11 4.03 2.88 86.38 0.25 4.28 16 5 N -1.10 -37.18 5.71 -187.50 -1.07 -38.25 16 6 S 2.73 113.44 5.44 -56.49 -0.31 113.13 16 7 O -1.00 -46.60 14.98 -128.00 -1.92 -48.52 16 8 O -1.00 -42.93 16.97 -128.00 -2.17 -45.10 16 9 C -0.79 -36.28 5.97 22.73 0.14 -36.15 16 10 C 0.00 -0.20 9.53 22.22 0.21 0.02 16 11 C -0.25 -10.02 10.05 22.46 0.23 -9.79 16 12 C -0.06 -2.31 10.02 22.22 0.22 -2.09 16 13 C -0.23 -10.86 7.76 22.73 0.18 -10.68 16 14 C 0.15 7.32 5.19 -21.29 -0.11 7.21 16 15 C -0.55 -26.78 4.69 23.46 0.11 -26.67 16 16 H 0.11 5.22 4.46 -2.91 -0.01 5.21 16 17 C 0.04 1.91 4.00 85.26 0.34 2.25 16 18 N -0.80 -39.14 12.52 21.83 0.27 -38.86 16 19 Si 1.09 44.15 27.58 68.60 1.89 46.04 16 20 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.25 -9.20 6.38 99.48 0.64 -8.56 16 23 C 0.45 12.66 7.17 71.24 0.51 13.17 16 24 O -0.51 -17.96 13.54 21.97 0.30 -17.66 16 25 O -0.50 -10.17 13.17 -46.49 -0.61 -10.78 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 1.94 6.64 -2.39 -0.02 1.93 16 29 H 0.40 7.74 9.04 -74.06 -0.67 7.07 16 30 H 0.08 3.45 5.71 -2.39 -0.01 3.43 16 31 H 0.08 3.00 6.02 -2.39 -0.01 2.98 16 32 H 0.42 11.77 7.13 -96.74 -0.69 11.08 16 33 H 0.13 4.87 7.32 -2.91 -0.02 4.85 16 34 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.10 4.88 6.77 -2.91 -0.02 4.86 16 37 H 0.29 14.58 6.25 -92.70 -0.58 14.00 16 38 H 0.43 5.06 9.10 -74.06 -0.67 4.39 16 Total: -1.00 -65.77 320.96 -3.39 -69.16 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -0.75 Total: 42.62 kcal Atomic # 6 Polarization: -59.84 SS G_CDS: 2.68 Total: -57.15 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.80 Total: -77.11 kcal Atomic # 8 Polarization: -130.58 SS G_CDS: -6.11 Total: -136.69 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.89 Total: 46.04 kcal Atomic # 16 Polarization: 113.44 SS G_CDS: -0.31 Total: 113.13 kcal Total: -65.77 -3.39 -69.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573583991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.477 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds