Wall clock time and date at job start Tue Mar 31 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34680 * 117.00049 * 2 1 4 4 O 1.21446 * 120.00318 * 5.17963 * 3 2 1 5 5 C 1.47941 * 120.00073 * 185.17946 * 3 2 1 6 6 C 1.39621 * 120.00072 * 353.56660 * 5 3 2 7 7 C 1.37779 * 120.00362 * 179.97438 * 6 5 3 8 8 C 1.39620 * 119.99838 * 0.02562 * 7 6 5 9 9 C 1.47947 * 119.99983 * 179.97438 * 8 7 6 10 10 O 1.21440 * 119.99472 * 180.02562 * 9 8 7 11 11 O 1.34686 * 119.99589 * 0.02562 * 9 8 7 12 12 C 1.39576 * 120.00100 * 359.75753 * 8 7 6 13 13 C 1.37827 * 119.99858 * 0.47559 * 12 8 7 14 14 S 1.76203 * 119.99954 * 179.79982 * 13 12 8 15 15 O 1.42102 * 106.40463 * 128.95822 * 14 13 12 16 16 O 1.42092 * 106.40384 * 356.03405 * 14 13 12 17 17 N 1.65604 * 107.21471 * 242.49440 * 14 13 12 18 18 C 1.36936 * 119.99968 * 67.09557 * 17 14 13 19 19 H 1.08002 * 119.99999 * 5.06558 * 18 17 14 20 20 C 1.38812 * 120.00267 * 185.07027 * 18 17 14 21 21 N 1.31628 * 119.99861 * 354.88805 * 20 18 17 22 22 Si 1.86801 * 120.00210 * 174.89195 * 20 18 17 23 23 H 1.48501 * 109.47035 * 5.00043 * 22 20 18 24 24 H 1.48503 * 109.47174 * 124.99881 * 22 20 18 25 25 H 1.48501 * 109.47013 * 245.00143 * 22 20 18 26 26 H 1.09000 * 109.47351 * 184.77917 * 1 2 3 27 27 H 1.08990 * 109.47379 * 304.78554 * 1 2 3 28 28 H 1.09004 * 109.47006 * 64.78855 * 1 2 3 29 29 H 1.07998 * 119.99394 * 359.97186 * 6 5 3 30 30 H 1.08002 * 120.00536 * 180.02562 * 7 6 5 31 31 H 0.96703 * 116.99766 * 179.97438 * 11 9 8 32 32 H 1.07999 * 120.00063 * 180.27654 * 12 8 7 33 33 H 0.96999 * 120.00201 * 247.09299 * 17 14 13 34 34 H 0.96990 * 119.99751 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4059 2.2166 0.0949 5 6 3.5362 1.2798 -0.1157 6 6 4.3028 0.1131 -0.0895 7 6 5.6743 0.1874 -0.1978 8 6 6.2977 1.4293 -0.3331 9 6 7.7704 1.5091 -0.4487 10 8 8.3126 2.5894 -0.5659 11 8 8.5098 0.3836 -0.4240 12 6 5.5311 2.5953 -0.3637 13 6 4.1594 2.5214 -0.2506 14 16 3.1921 3.9938 -0.2840 15 8 2.1758 3.7843 -1.2549 16 8 4.1107 5.0763 -0.3416 17 7 2.4245 4.1092 1.1788 18 6 3.1518 4.3278 2.3183 19 1 4.2151 4.5064 2.2543 20 6 2.5226 4.3198 3.5556 21 7 1.2136 4.2026 3.6275 22 14 3.5337 4.4753 5.1187 23 1 4.9563 4.7143 4.7662 24 1 3.0256 5.6137 5.9256 25 1 3.4229 3.2215 5.9067 26 1 -0.3634 -1.0241 0.0856 27 1 -0.3633 0.5862 0.8439 28 1 -0.3633 0.4378 -0.9298 29 1 3.8205 -0.8475 0.0155 30 1 6.2673 -0.7151 -0.1780 31 1 9.4681 0.4860 -0.5033 32 1 6.0129 3.5557 -0.4729 33 1 1.4597 4.0220 1.2286 34 1 0.7739 4.1973 4.4920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598970953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:31 Heat of formation + Delta-G solvation = -198.931560 kcal Electronic energy + Delta-G solvation = -26729.378765 eV Core-core repulsion = 22527.718157 eV Total energy + Delta-G solvation = -4201.660607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.054 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64002 -40.14291 -38.34608 -36.51986 -36.20634 -35.60029 -34.58257 -34.49145 -31.90513 -31.19640 -30.99259 -27.77379 -25.42995 -24.55446 -23.17126 -22.08181 -20.87200 -18.92229 -18.16546 -17.94917 -17.88815 -17.38921 -16.73714 -16.27785 -16.14498 -15.72116 -15.42966 -15.13717 -14.61751 -14.41264 -14.16188 -13.93160 -13.52250 -13.37547 -13.19140 -12.67712 -12.50080 -11.96997 -11.92606 -11.75219 -11.68642 -11.37884 -11.03223 -10.82897 -10.81632 -10.77640 -10.58745 -10.51647 -10.32572 -10.18900 -9.94240 -9.84422 -9.29895 -9.14260 -8.30168 -6.59087 -3.91243 0.16793 1.08872 1.65862 2.07210 2.73896 2.84752 2.91104 3.12782 3.18608 3.23407 3.67033 4.01929 4.49581 4.60298 4.70012 4.80437 4.91218 5.05361 5.16923 5.22999 5.29786 5.41026 5.50596 5.67885 5.75288 5.92599 5.97699 6.08495 6.24718 6.33178 6.51817 6.63083 7.06698 7.40860 7.74627 7.91133 8.69006 8.73661 9.25954 10.54659 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.006381 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.862267 B = 4386.837567 C = 5543.468985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.485 3.515 4 O -0.447 6.447 5 C 0.006 3.994 6 C -0.102 4.102 7 C -0.046 4.046 8 C -0.125 4.125 9 C 0.527 3.473 10 O -0.504 6.504 11 O -0.513 6.513 12 C 0.023 3.977 13 C -0.614 4.614 14 S 2.582 3.418 15 O -0.982 6.982 16 O -0.980 6.980 17 N -0.916 5.916 18 C -0.260 4.260 19 H 0.108 0.892 20 C 0.032 3.968 21 N -0.855 5.855 22 Si 0.919 3.081 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.278 1.278 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.414 0.586 32 H 0.160 0.840 33 H 0.419 0.581 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -12.741 -4.019 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.326 3.674 4 O -0.332 6.332 5 C 0.003 3.997 6 C -0.121 4.121 7 C -0.064 4.064 8 C -0.127 4.127 9 C 0.371 3.629 10 O -0.392 6.392 11 O -0.325 6.325 12 C 0.004 3.996 13 C -0.688 4.688 14 S 2.670 3.330 15 O -0.971 6.971 16 O -0.970 6.970 17 N -0.668 5.668 18 C -0.404 4.404 19 H 0.125 0.875 20 C -0.179 4.179 21 N -0.496 5.496 22 Si 0.745 3.255 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.273 0.727 32 H 0.178 0.822 33 H 0.257 0.743 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.836 -11.704 -4.791 13.540 hybrid contribution 0.807 -0.769 1.182 1.625 sum 5.643 -12.473 -3.609 14.158 Atomic orbital electron populations 1.23315 0.75615 1.03439 1.03370 1.86433 1.23857 1.31999 1.84969 1.21184 0.88732 0.82227 0.75234 1.90892 1.66238 1.34810 1.41228 1.18836 0.89407 0.93590 0.97829 1.21488 0.93543 0.98360 0.98687 1.21494 0.94508 0.97030 0.93390 1.19364 0.89157 0.95542 1.08682 1.20888 0.88181 0.81367 0.72445 1.90919 1.73439 1.29584 1.45273 1.84537 1.25521 1.36848 1.85573 1.21058 0.91307 0.98708 0.88563 1.32797 1.07564 1.21483 1.06986 1.08645 0.72827 0.75718 0.75808 1.93429 1.56116 1.86204 1.61320 1.93443 1.65072 1.50984 1.87460 1.52051 1.16652 1.75136 1.22945 1.19645 0.94673 1.41424 0.84669 0.87482 1.25394 0.95900 0.97162 0.99411 1.69760 1.07985 1.45143 1.26679 0.85969 0.80245 0.78199 0.81118 1.18735 1.20262 1.20385 0.88292 0.91019 0.91617 0.83389 0.83553 0.72730 0.82207 0.74266 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.66 101.05 1.08 1.53 16 2 O -0.36 -5.52 9.83 -40.44 -0.40 -5.91 16 3 C 0.48 9.28 7.71 34.71 0.27 9.55 16 4 O -0.45 -9.94 9.42 -27.44 -0.26 -10.20 16 5 C 0.01 0.10 5.87 -104.91 -0.62 -0.51 16 6 C -0.10 -1.43 9.60 -39.23 -0.38 -1.81 16 7 C -0.05 -0.59 9.60 -39.23 -0.38 -0.96 16 8 C -0.13 -1.92 5.88 -104.90 -0.62 -2.54 16 9 C 0.53 7.33 8.28 34.71 0.29 7.62 16 10 O -0.50 -8.51 17.12 -19.22 -0.33 -8.84 16 11 O -0.51 -4.86 12.67 -40.45 -0.51 -5.37 16 12 C 0.02 0.42 9.08 -39.23 -0.36 0.06 16 13 C -0.61 -12.43 5.88 -39.23 -0.23 -12.66 16 14 S 2.58 61.43 4.88 -107.50 -0.52 60.91 16 15 O -0.98 -24.80 15.24 -67.23 -1.02 -25.83 16 16 O -0.98 -24.99 16.56 -57.17 -0.95 -25.94 16 17 N -0.92 -23.05 4.58 31.50 0.14 -22.90 16 18 C -0.26 -6.63 9.66 -15.06 -0.15 -6.78 16 19 H 0.11 2.64 7.74 -52.49 -0.41 2.23 16 20 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 21 N -0.85 -22.27 13.07 55.49 0.73 -21.54 16 22 Si 0.92 19.31 29.56 -169.99 -5.02 14.29 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 30 H 0.15 1.36 7.60 -52.49 -0.40 0.96 16 31 H 0.41 1.97 9.11 45.56 0.42 2.39 16 32 H 0.16 3.04 6.91 -52.49 -0.36 2.68 16 33 H 0.42 10.92 6.63 -34.48 -0.23 10.70 16 34 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -33.90 320.14 -6.28 -40.18 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -1.78 Total: 12.12 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.18 Total: -5.80 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.87 Total: -44.45 kcal Atomic # 8 Polarization: -78.62 SS G_CDS: -3.47 Total: -82.08 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 61.43 SS G_CDS: -0.52 Total: 60.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.90 -6.28 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598970953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.749 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds