Wall clock time and date at job start Tue Mar 31 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47328 * 270.00029 * 3 2 1 5 5 H 1.48497 * 109.47409 * 29.99644 * 3 2 1 6 6 H 1.48501 * 109.47318 * 150.00066 * 3 2 1 7 7 C 1.38944 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00473 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00315 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99895 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47125 * 179.97438 * 12 10 9 14 14 S 1.65597 * 120.00100 * 164.09693 * 13 12 10 15 15 O 1.42101 * 106.40406 * 309.91036 * 14 13 12 16 16 O 1.42102 * 106.40422 * 176.99041 * 14 13 12 17 17 C 1.76204 * 107.21806 * 63.45099 * 14 13 12 18 18 C 1.38631 * 120.47354 * 242.73258 * 17 14 13 19 19 C 1.38576 * 118.49260 * 180.02562 * 18 17 14 20 20 C 1.38634 * 119.35608 * 359.97438 * 19 18 17 21 21 N 1.31467 * 120.90538 * 0.02562 * 20 19 18 22 22 C 1.32784 * 121.64470 * 359.97438 * 21 20 19 23 23 C 1.48068 * 119.72930 * 179.97438 * 22 21 20 24 24 O 1.21427 * 119.99795 * 173.90235 * 23 22 21 25 25 O 1.34675 * 119.99969 * 353.91569 * 23 22 21 26 26 H 0.96994 * 119.99964 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99510 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.47302 * 59.99712 * 12 10 9 29 29 H 1.09002 * 109.46959 * 300.00136 * 12 10 9 30 30 H 0.96999 * 119.99857 * 344.10634 * 13 12 10 31 31 H 1.08005 * 120.75105 * 0.03857 * 18 17 14 32 32 H 1.08000 * 120.32014 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.54088 * 180.27768 * 20 19 18 34 34 H 0.96701 * 117.00258 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4209 0.0031 12 6 5.5608 -2.3703 0.0033 13 7 6.0493 -3.7515 0.0049 14 16 7.6259 -4.0727 -0.3866 15 8 7.8827 -3.3928 -1.6076 16 8 7.8022 -5.4735 -0.2251 17 6 8.6343 -3.3003 0.8347 18 6 9.5194 -2.2935 0.4814 19 6 10.2930 -1.7148 1.4749 20 6 10.1603 -2.1552 2.7827 21 7 9.3129 -3.1120 3.0904 22 6 8.5533 -3.6927 2.1689 23 6 7.6134 -4.7669 2.5626 24 8 6.8386 -5.2246 1.7473 25 8 7.6177 -5.2363 3.8249 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3632 0.0014 28 1 5.9235 -1.8560 0.8933 29 1 5.9248 -1.8569 -0.8867 30 1 5.4490 -4.4779 0.2351 31 1 9.6040 -1.9675 -0.5447 32 1 10.9918 -0.9278 1.2328 33 1 10.7585 -1.7031 3.5601 34 1 6.9863 -5.9380 4.0346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:05 Heat of formation + Delta-G solvation = -130.421218 kcal Electronic energy + Delta-G solvation = -26172.504443 eV Core-core repulsion = 22006.107418 eV Total energy + Delta-G solvation = -4166.397025 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.27446 -39.84410 -38.61852 -37.26591 -36.38988 -35.79201 -34.67704 -33.75303 -33.34045 -32.32587 -31.77546 -27.34586 -26.07331 -24.62842 -24.15134 -22.33211 -19.74064 -19.58570 -18.86903 -18.70729 -18.35851 -17.76434 -17.15094 -17.04344 -16.21506 -15.78670 -15.72261 -15.51320 -15.01292 -14.67357 -14.42328 -14.30538 -14.23217 -13.75839 -13.29911 -13.16136 -12.66550 -12.45421 -12.38904 -12.11309 -12.05809 -11.82539 -11.70688 -11.58941 -11.25820 -11.05607 -10.81823 -10.66724 -10.22120 -10.08741 -10.05516 -9.69147 -9.38951 -8.71696 -8.29147 -6.39287 -3.91754 -0.37079 0.31897 0.43557 1.95796 2.33115 2.91477 2.95964 3.01586 3.09695 3.11353 3.55319 3.61569 3.72678 3.98579 4.02922 4.21200 4.45252 4.48104 4.59744 4.73845 4.91081 5.12874 5.15944 5.28431 5.33140 5.57931 5.64962 5.78521 6.03793 6.07142 6.96272 7.32962 7.46592 7.57754 8.03447 8.47435 8.84086 9.31099 9.66304 10.73233 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003943 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.018582 B = 7099.060019 C = 7413.623721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.446 3.554 11 O -0.566 6.566 12 C 0.100 3.900 13 N -1.079 6.079 14 S 2.713 3.287 15 O -0.961 6.961 16 O -0.936 6.936 17 C -0.681 4.681 18 C 0.014 3.986 19 C -0.160 4.160 20 C 0.142 3.858 21 N -0.445 5.445 22 C 0.195 3.805 23 C 0.525 3.475 24 O -0.466 6.466 25 O -0.485 6.485 26 H 0.275 0.725 27 H 0.373 0.627 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.437 0.563 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.176 0.824 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.519 -0.835 5.793 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.220 5.220 10 C 0.231 3.769 11 O -0.448 6.448 12 C -0.031 4.031 13 N -0.846 5.846 14 S 2.795 3.205 15 O -0.950 6.950 16 O -0.926 6.926 17 C -0.765 4.765 18 C -0.013 4.013 19 C -0.181 4.181 20 C -0.016 4.016 21 N -0.157 5.157 22 C 0.055 3.945 23 C 0.365 3.635 24 O -0.352 6.352 25 O -0.295 6.295 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.279 0.721 31 H 0.186 0.814 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 23.279 -1.864 5.644 24.026 hybrid contribution 0.231 1.543 0.208 1.574 sum 23.511 -0.322 5.851 24.230 Atomic orbital electron populations 1.69617 1.05677 1.27703 1.48502 1.25051 0.95511 0.98056 0.97333 0.86682 0.79769 0.83944 0.79086 1.19362 1.20055 1.19452 1.19452 0.78968 0.96817 1.48462 0.86058 1.42150 1.07709 1.06003 1.66158 1.19463 0.87714 0.84877 0.84873 1.90564 1.68773 1.30904 1.54571 1.20984 0.96514 0.83138 1.02428 1.55080 1.27613 1.14602 1.87339 1.01660 0.72385 0.73520 0.72898 1.93585 1.84936 1.76524 1.39990 1.93624 1.84814 1.28199 1.85949 1.32434 1.17659 1.12815 1.13598 1.21545 0.88968 0.89026 1.01716 1.22632 1.00223 1.01078 0.94149 1.23281 0.92240 0.90134 0.95953 1.67802 1.04229 1.07875 1.35748 1.19535 0.93526 0.93039 0.88410 1.20377 0.81454 0.80757 0.80927 1.90967 1.37412 1.56109 1.50675 1.84571 1.61272 1.54760 1.28926 0.91439 0.79444 0.90858 0.88587 0.72121 0.81443 0.82617 0.80736 0.71833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.96 55.50 0.77 -24.24 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 18.69 27.74 -169.99 -4.71 13.97 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.58 -13.41 5.09 -10.96 -0.06 -13.47 16 10 C 0.45 9.89 7.85 -10.99 -0.09 9.80 16 11 O -0.57 -14.79 15.31 5.55 0.08 -14.70 16 12 C 0.10 1.63 6.69 -5.20 -0.03 1.60 16 13 N -1.08 -17.73 4.66 -11.66 -0.05 -17.78 16 14 S 2.71 40.16 4.90 -107.50 -0.53 39.63 16 15 O -0.96 -15.06 16.57 -57.17 -0.95 -16.01 16 16 O -0.94 -16.19 15.26 -67.23 -1.03 -17.21 16 17 C -0.68 -8.11 5.90 -39.04 -0.23 -8.34 16 18 C 0.01 0.12 9.66 -39.31 -0.38 -0.26 16 19 C -0.16 -0.98 10.12 -39.31 -0.40 -1.37 16 20 C 0.14 1.02 11.18 -17.56 -0.20 0.82 16 21 N -0.44 -4.88 10.12 -9.81 -0.10 -4.98 16 22 C 0.19 2.43 6.75 -83.02 -0.56 1.87 16 23 C 0.53 6.92 8.15 34.76 0.28 7.20 16 24 O -0.47 -7.14 10.61 -27.42 -0.29 -7.43 16 25 O -0.48 -4.97 13.25 -40.42 -0.54 -5.51 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.34 7.77 -51.93 -0.40 0.93 16 30 H 0.44 7.91 6.53 -34.47 -0.23 7.68 16 31 H 0.17 1.13 7.45 -52.48 -0.39 0.74 16 32 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 33 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.42 2.33 9.11 45.56 0.42 2.74 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -38.29 316.74 -6.13 -44.43 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -1.66 Total: 14.79 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.85 Total: 3.75 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.57 Total: -60.48 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -2.72 Total: -60.86 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.97 kcal Atomic # 16 Polarization: 40.16 SS G_CDS: -0.53 Total: 39.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -38.29 -6.13 -44.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.995 kcal (2) G-P(sol) polarization free energy of solvation -38.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds