Wall clock time and date at job start Tue Mar 31 2020 05:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47328 * 270.00029 * 3 2 1 5 5 H 1.48497 * 109.47409 * 29.99644 * 3 2 1 6 6 H 1.48501 * 109.47318 * 150.00066 * 3 2 1 7 7 C 1.38944 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00192 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00473 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00315 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99895 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47125 * 179.97438 * 12 10 9 14 14 S 1.65597 * 120.00100 * 164.09693 * 13 12 10 15 15 O 1.42101 * 106.40406 * 309.91036 * 14 13 12 16 16 O 1.42102 * 106.40422 * 176.99041 * 14 13 12 17 17 C 1.76204 * 107.21806 * 63.45099 * 14 13 12 18 18 C 1.38631 * 120.47354 * 242.73258 * 17 14 13 19 19 C 1.38576 * 118.49260 * 180.02562 * 18 17 14 20 20 C 1.38634 * 119.35608 * 359.97438 * 19 18 17 21 21 N 1.31467 * 120.90538 * 0.02562 * 20 19 18 22 22 C 1.32784 * 121.64470 * 359.97438 * 21 20 19 23 23 C 1.48068 * 119.72930 * 179.97438 * 22 21 20 24 24 O 1.21427 * 119.99795 * 173.90235 * 23 22 21 25 25 O 1.34675 * 119.99969 * 353.91569 * 23 22 21 26 26 H 0.96994 * 119.99964 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99510 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.47302 * 59.99712 * 12 10 9 29 29 H 1.09002 * 109.46959 * 300.00136 * 12 10 9 30 30 H 0.96999 * 119.99857 * 344.10634 * 13 12 10 31 31 H 1.08005 * 120.75105 * 0.03857 * 18 17 14 32 32 H 1.08000 * 120.32014 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.54088 * 180.27768 * 20 19 18 34 34 H 0.96701 * 117.00258 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4209 0.0031 12 6 5.5608 -2.3703 0.0033 13 7 6.0493 -3.7515 0.0049 14 16 7.6259 -4.0727 -0.3866 15 8 7.8827 -3.3928 -1.6076 16 8 7.8022 -5.4735 -0.2251 17 6 8.6343 -3.3003 0.8347 18 6 9.5194 -2.2935 0.4814 19 6 10.2930 -1.7148 1.4749 20 6 10.1603 -2.1552 2.7827 21 7 9.3129 -3.1120 3.0904 22 6 8.5533 -3.6927 2.1689 23 6 7.6134 -4.7669 2.5626 24 8 6.8386 -5.2246 1.7473 25 8 7.6177 -5.2363 3.8249 26 1 -0.4850 0.8400 -0.0004 27 1 3.8649 -0.3632 0.0014 28 1 5.9235 -1.8560 0.8933 29 1 5.9248 -1.8569 -0.8867 30 1 5.4490 -4.4779 0.2351 31 1 9.6040 -1.9675 -0.5447 32 1 10.9918 -0.9278 1.2328 33 1 10.7585 -1.7031 3.5601 34 1 6.9863 -5.9380 4.0346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:05 Heat of formation + Delta-G solvation = -165.773069 kcal Electronic energy + Delta-G solvation = -26174.037414 eV Core-core repulsion = 22006.107418 eV Total energy + Delta-G solvation = -4167.929996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06503 -40.64062 -40.42722 -38.39486 -37.34554 -36.99085 -36.34807 -35.39747 -34.01102 -33.80435 -33.01353 -28.93954 -26.83834 -25.98088 -25.28785 -23.13668 -21.50501 -20.73477 -20.51704 -19.68689 -19.37266 -18.82950 -18.34410 -17.79267 -17.30936 -17.15530 -16.98284 -16.60267 -16.33221 -16.15370 -15.80613 -15.06865 -14.99916 -14.97139 -14.49530 -14.38542 -14.23641 -13.99972 -13.89580 -13.26265 -13.23418 -13.12830 -12.96572 -12.65104 -12.57843 -12.42853 -12.04689 -11.97682 -11.56072 -11.54489 -10.93071 -10.72525 -10.70054 -10.45850 -10.29587 -8.43201 -6.05908 -1.13637 -0.70098 -0.25388 1.14759 1.30670 1.36549 1.45915 1.56350 1.82508 1.83345 2.23109 2.37184 2.62254 2.80536 3.00967 3.12343 3.20975 3.66696 3.72563 3.82707 3.94743 4.08195 4.23837 4.27985 4.35701 4.60984 4.74197 4.81276 5.23943 5.30011 5.51450 5.87709 6.04945 6.34026 6.52994 6.73728 6.81507 7.31324 7.84231 8.73873 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003943 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.018582 B = 7099.060019 C = 7413.623721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.225 1.225 7 C -0.333 4.333 8 H 0.057 0.943 9 N -0.580 5.580 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.107 3.893 13 N -1.093 6.093 14 S 2.727 3.273 15 O -0.975 6.975 16 O -0.971 6.971 17 C -0.687 4.687 18 C 0.005 3.995 19 C -0.132 4.132 20 C 0.142 3.858 21 N -0.465 5.465 22 C 0.171 3.829 23 C 0.518 3.482 24 O -0.500 6.500 25 O -0.481 6.481 26 H 0.281 0.719 27 H 0.394 0.606 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.427 0.573 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.218 0.782 34 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.994 2.879 6.569 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.148 1.148 7 C -0.462 4.462 8 H 0.075 0.925 9 N -0.221 5.221 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.023 4.023 13 N -0.857 5.857 14 S 2.815 3.185 15 O -0.965 6.965 16 O -0.961 6.961 17 C -0.777 4.777 18 C -0.020 4.020 19 C -0.152 4.152 20 C -0.016 4.016 21 N -0.177 5.177 22 C 0.032 3.968 23 C 0.359 3.641 24 O -0.388 6.388 25 O -0.294 6.294 26 H 0.090 0.910 27 H 0.230 0.770 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.266 0.734 31 H 0.204 0.796 32 H 0.223 0.777 33 H 0.234 0.766 34 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 27.756 1.822 6.403 28.544 hybrid contribution -1.072 0.319 0.064 1.120 sum 26.684 2.141 6.466 27.540 Atomic orbital electron populations 1.69800 1.08250 1.29464 1.49495 1.26149 0.96468 1.02840 0.95646 0.85409 0.79738 0.76496 0.80204 1.17921 1.19968 1.14839 1.19017 0.81206 0.95148 1.50870 0.92512 1.41924 1.06002 1.07383 1.66781 1.20603 0.90348 0.83746 0.82089 1.90548 1.70745 1.32794 1.55848 1.21104 0.91317 0.83971 1.05870 1.55188 1.28393 1.14288 1.87814 1.00846 0.71852 0.72866 0.72983 1.93556 1.84966 1.76467 1.41482 1.93576 1.85108 1.30792 1.86667 1.31841 1.18856 1.14725 1.12247 1.21973 0.88443 0.88103 1.03513 1.23181 0.98889 1.00450 0.92636 1.24138 0.90991 0.88578 0.97863 1.67826 1.05052 1.09176 1.35671 1.19448 0.94648 0.93790 0.88953 1.20818 0.81263 0.80897 0.81104 1.90954 1.38895 1.57406 1.51512 1.84542 1.61770 1.55290 1.27811 0.90981 0.77013 0.86789 0.85434 0.73397 0.79551 0.77660 0.76597 0.69973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.96 21.66 0.30 -54.81 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 3 Si 0.96 37.02 27.74 68.60 1.90 38.92 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.23 -7.03 6.52 99.48 0.65 -6.38 16 7 C -0.33 -19.17 10.16 84.04 0.85 -18.31 16 8 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 9 N -0.58 -26.56 5.09 -306.99 -1.56 -28.13 16 10 C 0.45 19.92 7.85 87.66 0.69 20.61 16 11 O -0.61 -33.87 15.31 -3.06 -0.05 -33.92 16 12 C 0.11 3.30 6.69 85.63 0.57 3.87 16 13 N -1.09 -36.04 4.66 -190.79 -0.89 -36.93 16 14 S 2.73 79.66 4.90 -56.49 -0.28 79.38 16 15 O -0.97 -29.29 16.57 -128.00 -2.12 -31.41 16 16 O -0.97 -34.78 15.26 -118.39 -1.81 -36.59 16 17 C -0.69 -14.91 5.90 22.62 0.13 -14.78 16 18 C 0.01 0.07 9.66 22.44 0.22 0.29 16 19 C -0.13 -0.80 10.12 22.45 0.23 -0.58 16 20 C 0.14 1.30 11.18 84.84 0.95 2.25 16 21 N -0.46 -8.82 10.12 -184.94 -1.87 -10.69 16 22 C 0.17 4.01 6.75 41.87 0.28 4.29 16 23 C 0.52 13.75 8.15 70.43 0.57 14.33 16 24 O -0.50 -15.99 10.61 27.92 0.30 -15.69 16 25 O -0.48 -9.88 13.25 -55.84 -0.74 -10.62 16 26 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.39 14.44 5.76 -92.71 -0.53 13.91 16 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.13 3.14 7.77 -2.39 -0.02 3.12 16 30 H 0.43 16.27 6.53 -96.75 -0.63 15.64 16 31 H 0.19 1.65 7.45 -2.91 -0.02 1.63 16 32 H 0.21 -0.76 8.06 -2.91 -0.02 -0.78 16 33 H 0.22 0.05 8.06 -2.91 -0.02 0.02 16 34 H 0.44 5.03 9.11 -74.06 -0.67 4.36 16 Total: -1.00 -92.21 316.74 -2.53 -94.74 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.68 Total: 33.95 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.96 Total: 11.81 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -4.02 Total: -130.56 kcal Atomic # 8 Polarization: -123.81 SS G_CDS: -4.42 Total: -128.23 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 1.90 Total: 38.92 kcal Atomic # 16 Polarization: 79.66 SS G_CDS: -0.28 Total: 79.38 kcal Total: -92.21 -2.53 -94.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.038 kcal (2) G-P(sol) polarization free energy of solvation -92.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds