Wall clock time and date at job start Tue Mar 31 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99974 * 3 2 1 5 5 H 1.48506 * 109.47141 * 30.00182 * 3 2 1 6 6 H 1.48498 * 109.46874 * 150.00159 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00166 * 197.84598 * 7 2 1 9 9 C 1.41403 * 120.00028 * 17.84369 * 7 2 1 10 10 C 1.40714 * 120.24063 * 204.38644 * 9 7 2 11 11 C 1.37620 * 119.73878 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25185 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75330 * 179.97438 * 12 11 10 14 14 S 1.81398 * 109.47300 * 89.99529 * 13 12 11 15 15 O 1.42101 * 110.54590 * 291.63131 * 14 13 12 16 16 O 1.42105 * 110.53982 * 68.37799 * 14 13 12 17 17 N 1.65599 * 104.45046 * 180.02562 * 14 13 12 18 18 C 1.46499 * 119.99655 * 65.00160 * 17 14 13 19 19 H 1.08999 * 109.47415 * 335.00228 * 18 17 14 20 20 C 1.53000 * 109.46892 * 214.99681 * 18 17 14 21 21 O 1.42895 * 109.47304 * 295.00094 * 20 18 17 22 22 C 1.50705 * 109.46921 * 95.00127 * 18 17 14 23 23 O 1.20819 * 120.00212 * 359.97438 * 22 18 17 24 24 O 1.34229 * 120.00082 * 179.97438 * 22 18 17 25 25 C 1.38640 * 120.50285 * 0.25050 * 12 11 10 26 26 C 1.37617 * 120.24348 * 359.44930 * 25 12 11 27 27 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.13004 * 0.02562 * 10 9 7 29 29 H 1.08006 * 119.87289 * 180.02562 * 11 10 9 30 30 H 1.08997 * 109.47017 * 210.00019 * 13 12 11 31 31 H 1.08998 * 109.46985 * 329.99783 * 13 12 11 32 32 H 0.97002 * 120.00096 * 245.00142 * 17 14 13 33 33 H 1.09000 * 109.47015 * 55.00951 * 20 18 17 34 34 H 1.09007 * 109.46690 * 175.00163 * 20 18 17 35 35 H 0.96702 * 114.00179 * 180.02562 * 21 20 18 36 36 H 0.96693 * 117.00235 * 179.97438 * 24 22 18 37 37 H 1.07995 * 119.87855 * 179.70679 * 25 12 11 38 38 H 1.08008 * 120.12837 * 180.27402 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3763 10 6 1.8259 -3.6498 0.0825 11 6 1.1799 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1144 13 6 -0.6317 -6.0238 -1.5159 14 16 -1.9231 -6.4134 -0.3031 15 8 -1.3442 -6.7735 0.9437 16 8 -2.9770 -5.4628 -0.3742 17 7 -2.6015 -7.8183 -0.8586 18 6 -1.8048 -9.0467 -0.9081 19 1 -0.7477 -8.7916 -0.9814 20 6 -2.2161 -9.8723 -2.1289 21 8 -3.5694 -10.3052 -1.9773 22 6 -2.0421 -9.8501 0.3447 23 8 -2.7985 -9.4385 1.1921 24 8 -1.4130 -11.0229 0.5191 25 6 -0.4055 -3.5316 -1.5770 26 6 0.2210 -2.3618 -1.2123 27 1 -0.4851 0.8400 0.0004 28 1 2.6931 -3.6960 0.7244 29 1 1.5415 -5.7617 0.0612 30 1 -1.0835 -5.8959 -2.4995 31 1 0.0911 -6.8389 -1.5514 32 1 -3.5263 -7.8277 -1.1512 33 1 -2.1285 -9.2611 -3.0271 34 1 -1.5641 -10.7416 -2.2159 35 1 -3.8978 -10.8357 -2.7161 36 1 -1.5967 -11.5020 1.3386 37 1 -1.2706 -3.4999 -2.2226 38 1 -0.1511 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:09 Heat of formation + Delta-G solvation = -193.683274 kcal Electronic energy + Delta-G solvation = -25858.300735 eV Core-core repulsion = 21792.700805 eV Total energy + Delta-G solvation = -4065.599930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42225 -37.81261 -37.63701 -36.61735 -36.20034 -35.42266 -34.76170 -34.20160 -31.55379 -29.46905 -29.40016 -27.89321 -24.77161 -24.28588 -21.47428 -21.19785 -20.48498 -19.28770 -18.37966 -17.82918 -17.46817 -17.27319 -17.16934 -16.11421 -15.79484 -15.59335 -15.46888 -14.97412 -14.60042 -14.37236 -13.93070 -13.84803 -13.59212 -13.06433 -12.71031 -12.43249 -12.19416 -12.10721 -11.92267 -11.62019 -11.57178 -11.50898 -11.43483 -11.37815 -11.18855 -11.04267 -11.02686 -10.62577 -10.46891 -10.34152 -9.87388 -9.69930 -9.54754 -9.24822 -7.64298 -7.48291 -6.93547 -4.51729 0.52127 2.18827 2.60523 2.72005 2.93495 2.99791 3.03372 3.03763 3.08630 3.62690 3.80986 4.19286 4.30271 4.45334 4.52107 4.69983 4.76744 4.89175 5.15664 5.23660 5.29025 5.51573 5.63008 5.96695 6.16004 6.23345 6.43594 6.81351 6.89247 6.90083 7.07115 7.14058 7.15942 7.43275 7.63611 7.84400 7.86796 7.88156 8.10352 8.45514 8.69853 8.77663 9.99707 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.030172 B = 0.002798 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.789494 B =10003.226517 C =10163.769018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.084 0.916 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.067 4.067 12 C -0.240 4.240 13 C -0.519 4.519 14 S 2.565 3.435 15 O -0.953 6.953 16 O -0.953 6.953 17 N -1.104 6.104 18 C 0.171 3.829 19 H 0.133 0.867 20 C 0.075 3.925 21 O -0.568 6.568 22 C 0.467 3.533 23 O -0.485 6.485 24 O -0.521 6.521 25 C -0.080 4.080 26 C -0.167 4.167 27 H 0.286 0.714 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.422 0.578 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.387 0.613 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 -17.438 -7.863 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.114 3.886 10 C -0.245 4.245 11 C -0.087 4.087 12 C -0.246 4.246 13 C -0.650 4.650 14 S 2.665 3.335 15 O -0.943 6.943 16 O -0.943 6.943 17 N -0.859 5.859 18 C 0.060 3.940 19 H 0.150 0.850 20 C -0.005 4.005 21 O -0.375 6.375 22 C 0.305 3.695 23 O -0.370 6.370 24 O -0.333 6.333 25 C -0.099 4.099 26 C -0.187 4.187 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.257 0.743 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.550 -16.252 -6.530 17.700 hybrid contribution 0.021 -0.095 -0.522 0.531 sum -2.529 -16.347 -7.052 17.982 Atomic orbital electron populations 1.69821 1.07752 1.29941 1.32539 1.26040 0.94813 1.01780 0.92150 0.86210 0.80477 0.80039 0.79486 1.19062 1.20084 1.18411 1.19769 0.98350 0.91180 1.38269 0.89829 1.17748 0.90792 0.92201 0.87845 1.20975 1.04108 0.92544 1.06896 1.20458 0.94561 0.97229 0.96405 1.18060 1.03312 0.90327 1.12877 1.28959 1.15019 1.05797 1.15181 1.07250 0.76545 0.72523 0.77191 1.93557 1.79579 1.81566 1.39581 1.93562 1.53838 1.59650 1.87242 1.55982 1.24187 1.21819 1.83921 1.20242 0.97633 0.85576 0.90579 0.85003 1.22415 0.84597 0.97859 0.95619 1.86510 1.27606 1.74406 1.48949 1.23729 0.77481 0.79514 0.88776 1.90738 1.33961 1.68869 1.43403 1.84457 1.67447 1.34289 1.47112 1.20612 0.98104 0.92405 0.98824 1.21328 0.99378 0.96788 1.01158 0.90284 0.88279 0.88655 0.85678 0.86364 0.74302 0.90829 0.90763 0.76507 0.73147 0.88628 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.62 10.95 55.55 0.61 -19.01 16 2 C 0.07 1.75 5.14 -17.35 -0.09 1.66 16 3 Si 0.91 17.89 29.60 -169.99 -5.03 12.86 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.40 9.05 -37.74 -0.34 -11.74 16 8 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 9 C 0.12 3.06 5.57 -106.82 -0.60 2.46 16 10 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 11 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 12 C -0.24 -5.07 5.16 -104.33 -0.54 -5.61 16 13 C -0.52 -7.98 6.08 36.01 0.22 -7.76 16 14 S 2.56 45.50 5.36 -107.50 -0.58 44.93 16 15 O -0.95 -20.34 17.77 -57.54 -1.02 -21.37 16 16 O -0.95 -20.50 18.08 -57.54 -1.04 -21.54 16 17 N -1.10 -14.50 4.84 -5.88 -0.03 -14.53 16 18 C 0.17 1.80 2.99 -69.08 -0.21 1.59 16 19 H 0.13 1.03 7.15 -51.93 -0.37 0.65 16 20 C 0.07 0.48 6.77 37.16 0.25 0.73 16 21 O -0.57 -4.31 12.85 -35.23 -0.45 -4.76 16 22 C 0.47 6.17 7.17 36.01 0.26 6.43 16 23 O -0.49 -8.61 17.19 -18.74 -0.32 -8.93 16 24 O -0.52 -4.88 13.35 -39.26 -0.52 -5.40 16 25 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 26 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 27 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.12 1.55 8.08 -51.93 -0.42 1.13 16 31 H 0.12 1.37 7.38 -51.92 -0.38 0.99 16 32 H 0.42 5.18 8.54 -34.47 -0.29 4.88 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.39 1.01 9.12 45.56 0.42 1.42 16 36 H 0.41 2.36 9.10 45.56 0.41 2.78 16 37 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.12 3.19 6.16 -52.48 -0.32 2.86 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -38.11 349.27 -8.28 -46.39 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -2.62 Total: 12.79 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -2.53 Total: -26.68 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.58 Total: -33.53 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -3.36 Total: -62.01 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 45.50 SS G_CDS: -0.58 Total: 44.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.11 -8.28 -46.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.298 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds