Wall clock time and date at job start Tue Mar 31 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86811 * 119.99692 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99624 * 3 2 1 5 5 H 1.48497 * 109.47011 * 30.00050 * 3 2 1 6 6 H 1.48496 * 109.46974 * 149.99631 * 3 2 1 7 7 C 1.39941 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00145 * 162.23087 * 7 2 1 9 9 C 1.41396 * 119.99873 * 342.22155 * 7 2 1 10 10 C 1.40735 * 120.24649 * 335.28029 * 9 7 2 11 11 C 1.37592 * 119.74678 * 180.02562 * 10 9 7 12 12 C 1.38652 * 120.24816 * 359.72530 * 11 10 9 13 13 C 1.38614 * 120.49977 * 0.55255 * 12 11 10 14 14 S 1.76202 * 119.87372 * 179.72379 * 13 12 11 15 15 O 1.42093 * 106.40381 * 156.18695 * 14 13 12 16 16 O 1.42105 * 106.40421 * 23.26242 * 14 13 12 17 17 N 1.65608 * 107.21852 * 269.72524 * 14 13 12 18 18 C 1.46500 * 119.99842 * 64.99631 * 17 14 13 19 19 C 1.53003 * 109.46986 * 165.00114 * 18 17 14 20 20 C 1.53001 * 109.47137 * 180.02562 * 19 18 17 21 21 H 1.09000 * 109.46728 * 55.00218 * 20 19 18 22 22 O 1.42902 * 109.47013 * 295.00186 * 20 19 18 23 23 C 1.50696 * 109.46858 * 175.00358 * 20 19 18 24 24 O 1.20820 * 120.00042 * 115.00521 * 23 20 19 25 25 O 1.34234 * 119.99831 * 294.99971 * 23 20 19 26 26 C 1.37629 * 120.25086 * 359.44707 * 13 12 11 27 27 H 0.96999 * 120.00100 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12545 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87302 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.75059 * 180.29362 * 12 11 10 31 31 H 0.96996 * 119.99695 * 245.00580 * 17 14 13 32 32 H 1.08999 * 109.47301 * 285.00678 * 18 17 14 33 33 H 1.08998 * 109.47011 * 45.00365 * 18 17 14 34 34 H 1.08997 * 109.47176 * 300.00759 * 19 18 17 35 35 H 1.09001 * 109.46563 * 60.00084 * 19 18 17 36 36 H 0.96693 * 113.99755 * 300.00170 * 22 20 19 37 37 H 0.96700 * 117.00015 * 180.02562 * 25 23 20 38 38 H 1.08006 * 120.13303 * 180.25456 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5396 1.4404 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2340 -0.2860 9 6 1.3517 -2.4074 0.3728 10 6 0.2235 -2.3641 1.2130 11 6 -0.4069 -3.5338 1.5703 12 6 0.0620 -4.7514 1.1012 13 6 1.1757 -4.8064 0.2778 14 16 1.7618 -6.3633 -0.3029 15 8 2.4876 -6.0994 -1.4956 16 8 0.6563 -7.2545 -0.2469 17 7 2.8641 -6.9156 0.8028 18 6 2.4330 -7.2506 2.1622 19 6 3.5230 -8.0708 2.8553 20 6 3.0725 -8.4212 4.2749 21 1 2.1074 -8.9263 4.2355 22 8 2.9526 -7.2239 5.0457 23 6 4.0898 -9.3306 4.9145 24 8 4.7194 -8.9527 5.8739 25 8 4.2964 -10.5607 4.4182 26 6 1.8221 -3.6491 -0.0925 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1455 -1.4165 1.5766 29 1 -1.2730 -3.5029 2.2146 30 1 -0.4418 -5.6642 1.3829 31 1 3.7951 -7.0171 0.5502 32 1 2.2561 -6.3333 2.7238 33 1 1.5127 -7.8329 2.1184 34 1 3.6999 -8.9880 2.2937 35 1 4.4433 -7.4884 2.8990 36 1 3.7754 -6.7220 5.1231 37 1 4.9587 -11.1077 4.8623 38 1 2.6872 -3.6939 -0.7375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647343977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:21 Heat of formation + Delta-G solvation = -207.087801 kcal Electronic energy + Delta-G solvation = -25474.506756 eV Core-core repulsion = 21408.325562 eV Total energy + Delta-G solvation = -4066.181194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86368 -37.87919 -37.64459 -36.72563 -36.48991 -35.37089 -35.28387 -33.85233 -31.37367 -30.08673 -29.80498 -26.94579 -25.49775 -22.81802 -21.96264 -21.79435 -20.98800 -19.19313 -18.71342 -18.06375 -17.95083 -17.04423 -16.44993 -16.21635 -15.93758 -15.75508 -15.39726 -15.08896 -14.81444 -14.42480 -13.99574 -13.68966 -13.47467 -13.34116 -12.74364 -12.59335 -12.23637 -11.99141 -11.96773 -11.81578 -11.58723 -11.57940 -11.53560 -11.39198 -11.36803 -11.29682 -11.05779 -10.88443 -10.61630 -10.45449 -9.83060 -9.70546 -9.35202 -9.21060 -8.04905 -7.70988 -6.93116 -4.54324 0.96909 1.69658 2.18199 2.50768 2.62853 2.99555 3.01209 3.07664 3.48426 3.80305 3.82371 4.20357 4.33611 4.43380 4.50483 4.61517 4.85709 5.04360 5.11977 5.33435 5.38264 5.57352 5.79390 5.98600 6.03251 6.06250 6.17080 6.64837 6.75153 6.82387 7.01673 7.05008 7.12244 7.21483 7.37156 7.43178 7.71797 7.79404 7.93440 8.38939 8.66165 8.70785 10.02594 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.003118 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.651892 B = 8976.702132 C = 9893.339357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.147 4.147 13 C -0.631 4.631 14 S 2.690 3.310 15 O -0.971 6.971 16 O -0.974 6.974 17 N -1.123 6.123 18 C 0.123 3.877 19 C -0.155 4.155 20 C 0.123 3.877 21 H 0.145 0.855 22 O -0.526 6.526 23 C 0.451 3.549 24 O -0.509 6.509 25 O -0.512 6.512 26 C -0.126 4.126 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.411 0.589 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -13.466 7.622 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.169 4.169 13 C -0.724 4.724 14 S 2.786 3.214 15 O -0.962 6.962 16 O -0.964 6.964 17 N -0.881 5.881 18 C -0.003 4.003 19 C -0.194 4.194 20 C 0.061 3.939 21 H 0.162 0.838 22 O -0.332 6.332 23 C 0.293 3.707 24 O -0.397 6.397 25 O -0.324 6.324 26 C -0.147 4.147 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.246 0.754 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.238 0.762 37 H 0.270 0.730 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.327 -13.594 7.006 16.194 hybrid contribution 1.681 1.189 0.620 2.150 sum 7.008 -12.405 7.625 16.160 Atomic orbital electron populations 1.69777 1.07679 1.29676 1.34696 1.25936 0.94775 1.01567 0.92052 0.86255 0.80591 0.80213 0.79406 1.19328 1.19998 1.18333 1.19593 0.98339 0.91010 1.40087 0.89972 1.17679 0.91832 0.92016 0.89665 1.21640 0.97558 0.97128 0.97331 1.20813 0.99361 0.93165 1.00639 1.20093 0.97231 0.97497 1.02039 1.29695 1.09158 1.17781 1.15722 1.01636 0.72750 0.74487 0.72519 1.93543 1.72809 1.86260 1.43567 1.93512 1.52357 1.64102 1.86439 1.55599 1.24041 1.83616 1.24842 1.21160 0.97062 1.00168 0.81957 1.22447 1.00164 1.02678 0.94086 1.21484 0.97933 0.84883 0.89587 0.83807 1.86718 1.38719 1.33877 1.73882 1.24683 0.82760 0.81358 0.81937 1.90755 1.47153 1.75102 1.26649 1.84557 1.60447 1.27287 1.60133 1.20738 1.01121 0.91745 1.01127 0.90527 0.85796 0.88342 0.87538 0.75370 0.90125 0.89865 0.88622 0.89963 0.76207 0.72987 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 10.97 55.55 0.61 -19.06 16 2 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 3 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.09 2.33 5.57 -106.82 -0.60 1.73 16 10 C -0.12 -2.86 8.70 -38.87 -0.34 -3.20 16 11 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.15 -3.09 9.53 -39.29 -0.37 -3.47 16 13 C -0.63 -13.32 5.94 -39.66 -0.24 -13.55 16 14 S 2.69 47.79 5.74 -107.50 -0.62 47.17 16 15 O -0.97 -19.78 17.27 -57.17 -0.99 -20.77 16 16 O -0.97 -18.97 16.73 -57.17 -0.96 -19.93 16 17 N -1.12 -14.11 6.00 -10.61 -0.06 -14.17 16 18 C 0.12 1.32 6.12 -4.04 -0.02 1.29 16 19 C -0.15 -1.15 5.01 -26.73 -0.13 -1.29 16 20 C 0.12 0.95 3.49 -27.88 -0.10 0.85 16 21 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 22 O -0.53 -4.96 12.53 -55.14 -0.69 -5.65 16 23 C 0.45 3.76 7.64 36.00 0.28 4.03 16 24 O -0.51 -5.90 17.08 -25.46 -0.43 -6.33 16 25 O -0.51 -3.05 13.39 -39.27 -0.53 -3.57 16 26 C -0.13 -2.96 9.26 -38.87 -0.36 -3.32 16 27 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 28 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.11 2.00 7.59 -52.49 -0.40 1.60 16 31 H 0.41 4.16 8.65 -34.47 -0.30 3.86 16 32 H 0.08 0.93 7.82 -51.93 -0.41 0.52 16 33 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 2.78 8.79 45.56 0.40 3.18 16 37 H 0.41 0.86 9.10 45.56 0.41 1.27 16 38 H 0.11 2.50 7.60 -52.48 -0.40 2.10 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -34.33 348.25 -8.81 -43.15 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -2.65 Total: 11.35 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -2.71 Total: -30.28 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.55 Total: -33.23 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -3.60 Total: -56.25 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -0.62 Total: 47.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.33 -8.81 -43.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647343977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.940 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds