Wall clock time and date at job start Tue Mar 31 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86790 * 119.99946 * 2 1 4 4 H 1.48500 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47338 * 300.00520 * 3 2 1 6 6 H 1.48500 * 109.47277 * 60.00445 * 3 2 1 7 7 C 1.39949 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99882 * 197.87157 * 7 2 1 9 9 C 1.41395 * 120.00205 * 17.87856 * 7 2 1 10 10 C 1.40732 * 120.24740 * 24.35949 * 9 7 2 11 11 C 1.37593 * 119.74901 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24534 * 359.73037 * 11 10 9 13 13 C 1.38615 * 120.50075 * 0.55064 * 12 11 10 14 14 S 1.76198 * 119.87539 * 179.72145 * 13 12 11 15 15 O 1.42103 * 106.40398 * 156.18721 * 14 13 12 16 16 O 1.42100 * 106.40486 * 23.26606 * 14 13 12 17 17 N 1.65597 * 107.22008 * 269.72878 * 14 13 12 18 18 C 1.46506 * 120.00352 * 64.99570 * 17 14 13 19 19 H 1.09004 * 109.46574 * 335.00898 * 18 17 14 20 20 C 1.52998 * 109.47496 * 215.00223 * 18 17 14 21 21 C 1.53006 * 109.46821 * 64.99897 * 20 18 17 22 22 O 1.42898 * 109.46659 * 179.97438 * 21 20 18 23 23 C 1.50707 * 109.46655 * 95.00175 * 18 17 14 24 24 O 1.20819 * 120.00027 * 0.02562 * 23 18 17 25 25 O 1.34230 * 119.99566 * 180.02562 * 23 18 17 26 26 C 1.37638 * 120.24798 * 359.44862 * 13 12 11 27 27 H 0.96996 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.12837 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.87692 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.75064 * 180.29576 * 12 11 10 31 31 H 0.97005 * 120.00220 * 245.00503 * 17 14 13 32 32 H 1.08998 * 109.46976 * 305.00276 * 20 18 17 33 33 H 1.09002 * 109.46888 * 185.00009 * 20 18 17 34 34 H 1.09007 * 109.46489 * 60.00289 * 21 20 18 35 35 H 1.08996 * 109.47222 * 300.00404 * 21 20 18 36 36 H 0.96708 * 113.99569 * 179.97438 * 22 21 20 37 37 H 0.96697 * 116.99655 * 180.02562 * 25 23 18 38 38 H 1.07999 * 120.12608 * 180.24975 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8836 2.3963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0488 -1.2348 0.2865 9 6 1.3522 -2.4068 -0.3770 10 6 0.2207 -2.3614 -1.2127 11 6 -0.4098 -3.5303 -1.5722 12 6 0.0689 -4.7501 -1.1188 13 6 1.1790 -4.8064 -0.2907 14 16 1.7689 -6.3649 0.2817 15 8 3.1423 -6.1827 0.5977 16 8 1.3075 -7.3349 -0.6485 17 7 0.9986 -6.6854 1.7121 18 6 -0.4516 -6.8928 1.7328 19 1 -0.9031 -6.3868 0.8794 20 6 -1.0301 -6.3218 3.0290 21 6 -0.8380 -4.8040 3.0481 22 8 -1.3788 -4.2707 4.2585 23 6 -0.7491 -8.3683 1.6570 24 8 0.1572 -9.1647 1.5928 25 8 -2.0209 -8.7975 1.6607 26 6 1.8256 -3.6498 0.0817 27 1 -0.4850 0.8400 0.0004 28 1 -0.1512 -1.4127 -1.5705 29 1 -1.2780 -3.4980 -2.2137 30 1 -0.4294 -5.6631 -1.4099 31 1 1.5074 -6.7357 2.5365 32 1 -0.5156 -6.7640 3.8822 33 1 -2.0936 -6.5543 3.0856 34 1 -1.3525 -4.3620 2.1948 35 1 0.2254 -4.5717 2.9915 36 1 -1.2915 -3.3110 4.3390 37 1 -2.1619 -9.7528 1.6109 38 1 2.6927 -3.6962 0.7238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649782173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:26 Heat of formation + Delta-G solvation = -202.086333 kcal Electronic energy + Delta-G solvation = -26747.932965 eV Core-core repulsion = 22681.968651 eV Total energy + Delta-G solvation = -4065.964314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42022 -37.79191 -37.36414 -36.75407 -36.25521 -35.38977 -35.36857 -33.95909 -30.87686 -30.19552 -29.91840 -26.89987 -25.60100 -22.44098 -22.03307 -21.39608 -21.03790 -19.40266 -18.24018 -18.16058 -17.36142 -17.34766 -16.67933 -15.99561 -15.86682 -15.45408 -15.24540 -15.06850 -14.81651 -14.42873 -13.96876 -13.57606 -13.44927 -13.02794 -12.88165 -12.68474 -12.04555 -11.81940 -11.70100 -11.62476 -11.61418 -11.50028 -11.48138 -11.45785 -11.23447 -11.08554 -11.01452 -10.83728 -10.67409 -10.00258 -9.86016 -9.80651 -9.45725 -9.43036 -8.17416 -7.82870 -7.04045 -4.64623 0.82796 2.05205 2.13034 2.51777 2.82443 2.94314 2.97018 3.01024 3.36354 3.75109 4.05148 4.18117 4.34281 4.69970 4.76115 4.85364 5.04660 5.15101 5.28680 5.44034 5.58899 5.60887 5.93821 5.96310 5.98708 6.05039 6.41682 6.54908 6.64682 6.70276 6.90798 6.97218 7.09325 7.25648 7.60914 7.68033 7.70333 7.82791 7.83005 8.29663 8.55828 8.60369 9.91065 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.004297 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.249614 B = 6514.080192 C = 7246.923904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.155 4.155 13 C -0.633 4.633 14 S 2.684 3.316 15 O -0.964 6.964 16 O -0.965 6.965 17 N -1.100 6.100 18 C 0.174 3.826 19 H 0.131 0.869 20 C -0.117 4.117 21 C 0.075 3.925 22 O -0.578 6.578 23 C 0.466 3.534 24 O -0.495 6.495 25 O -0.514 6.514 26 C -0.123 4.123 27 H 0.284 0.716 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.421 0.579 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.386 0.614 37 H 0.410 0.590 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 -6.399 5.146 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.176 4.176 13 C -0.725 4.725 14 S 2.780 3.220 15 O -0.954 6.954 16 O -0.955 6.955 17 N -0.857 5.857 18 C 0.063 3.937 19 H 0.149 0.851 20 C -0.156 4.156 21 C -0.003 4.003 22 O -0.385 6.385 23 C 0.305 3.695 24 O -0.381 6.381 25 O -0.326 6.326 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.233 0.767 37 H 0.268 0.732 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.013 -7.250 4.712 9.995 hybrid contribution 0.157 1.343 0.119 1.357 sum -4.856 -5.907 4.831 9.045 Atomic orbital electron populations 1.69770 1.07648 1.29677 1.34611 1.25934 0.94791 1.01592 0.91928 0.86212 0.81142 0.80470 0.78755 1.18169 1.19547 1.19797 1.19678 0.98444 0.90948 1.39631 0.89791 1.17683 0.91745 0.91939 0.89704 1.21658 0.97572 0.97233 0.97273 1.20808 0.99362 0.93018 1.00479 1.20090 0.97335 0.97361 1.02837 1.29716 1.10023 1.17864 1.14875 1.01968 0.73079 0.74734 0.72234 1.93553 1.30914 1.87331 1.83613 1.93542 1.81903 1.59249 1.60801 1.55665 1.14433 1.87441 1.28132 1.20041 0.82230 0.88465 1.02936 0.85130 1.21690 1.03067 0.95848 0.95000 1.22124 0.98707 0.92425 0.87073 1.86325 1.83910 1.27406 1.40840 1.23946 0.80329 0.92975 0.72273 1.90723 1.46746 1.56534 1.44057 1.84519 1.30043 1.32481 1.85549 1.20782 1.00387 0.91513 1.01811 0.90532 0.85688 0.88264 0.87613 0.74417 0.89961 0.88467 0.92308 0.92394 0.76665 0.73152 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.17 10.95 55.55 0.61 -17.56 16 2 C 0.08 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.46 -11.01 9.05 -37.74 -0.34 -11.35 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.09 2.23 5.58 -106.83 -0.60 1.63 16 10 C -0.12 -2.71 8.70 -38.88 -0.34 -3.05 16 11 C -0.12 -2.42 10.02 -39.66 -0.40 -2.81 16 12 C -0.16 -3.08 8.92 -39.29 -0.35 -3.43 16 13 C -0.63 -12.77 5.81 -39.66 -0.23 -13.01 16 14 S 2.68 49.49 5.65 -107.50 -0.61 48.88 16 15 O -0.96 -20.02 17.27 -57.17 -0.99 -21.01 16 16 O -0.97 -19.82 17.02 -57.17 -0.97 -20.79 16 17 N -1.10 -15.75 4.41 -5.88 -0.03 -15.78 16 18 C 0.17 2.23 2.68 -69.08 -0.18 2.05 16 19 H 0.13 1.64 7.24 -51.93 -0.38 1.26 16 20 C -0.12 -1.30 5.15 -26.73 -0.14 -1.44 16 21 C 0.07 0.94 6.93 37.16 0.26 1.20 16 22 O -0.58 -7.28 13.66 -35.23 -0.48 -7.76 16 23 C 0.47 6.21 7.70 36.01 0.28 6.49 16 24 O -0.49 -8.16 17.19 -18.74 -0.32 -8.49 16 25 O -0.51 -5.09 13.23 -39.26 -0.52 -5.60 16 26 C -0.12 -2.74 9.26 -38.87 -0.36 -3.10 16 27 H 0.28 5.91 8.30 -40.82 -0.34 5.57 16 28 H 0.13 2.96 6.16 -52.48 -0.32 2.64 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.11 1.89 7.59 -52.49 -0.40 1.49 16 31 H 0.42 5.07 8.84 -34.47 -0.30 4.77 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.99 8.00 -51.93 -0.42 0.57 16 34 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.39 3.68 9.12 45.56 0.42 4.09 16 37 H 0.41 2.30 9.10 45.56 0.41 2.72 16 38 H 0.11 2.41 7.60 -52.49 -0.40 2.01 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -32.37 347.17 -8.20 -40.57 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -2.61 Total: 15.44 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -2.49 Total: -25.20 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.58 Total: -33.34 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -3.28 Total: -63.65 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.61 Total: 48.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.37 -8.20 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649782173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.516 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds