Wall clock time and date at job start Tue Mar 31 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42895 * 109.46772 * 2 1 4 4 C 1.42904 * 113.99882 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.91567 * 26.10067 * 4 3 2 6 6 C 1.54910 * 111.00548 * 262.19637 * 4 3 2 7 7 N 1.47423 * 104.83537 * 204.91737 * 6 4 3 8 8 C 1.34770 * 125.65148 * 204.16776 * 7 6 4 9 9 O 1.21278 * 120.00696 * 179.97438 * 8 7 6 10 10 C 1.50710 * 119.99781 * 359.95388 * 8 7 6 11 11 O 1.42900 * 109.46811 * 179.97438 * 10 8 7 12 12 C 1.42898 * 113.99777 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46874 * 60.00344 * 12 11 10 14 14 C 1.52998 * 109.47192 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47432 * 300.00470 * 12 11 10 16 16 C 1.47026 * 108.69923 * 24.12468 * 7 6 4 17 17 C 1.54317 * 107.27227 * 358.94706 * 16 7 6 18 18 H 1.08997 * 110.72319 * 96.34835 * 17 16 7 19 19 C 1.53001 * 110.71837 * 219.43770 * 17 16 7 20 20 N 1.46497 * 109.47393 * 293.54824 * 19 17 16 21 21 C 1.36935 * 120.00298 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99995 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00267 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00127 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00531 * 25 23 21 27 27 H 1.48503 * 109.47399 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47295 * 300.00628 * 25 23 21 29 29 H 1.09001 * 109.46656 * 299.99631 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99820 * 1 2 3 31 31 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46656 * 240.00369 * 2 1 3 33 33 H 1.08998 * 109.47444 * 120.00179 * 2 1 3 34 34 H 1.09007 * 110.36604 * 86.07512 * 6 4 3 35 35 H 1.09002 * 110.36827 * 323.76020 * 6 4 3 36 36 H 1.09001 * 109.46992 * 300.00212 * 10 8 7 37 37 H 1.09000 * 109.46832 * 60.00063 * 10 8 7 38 38 H 1.09005 * 109.47179 * 59.99975 * 13 12 11 39 39 H 1.09002 * 109.47698 * 179.97438 * 13 12 11 40 40 H 1.08996 * 109.47205 * 299.99770 * 13 12 11 41 41 H 1.08996 * 109.47268 * 60.00311 * 14 12 11 42 42 H 1.09007 * 109.46860 * 180.02562 * 14 12 11 43 43 H 1.08999 * 109.47422 * 299.99915 * 14 12 11 44 44 H 1.09009 * 109.46908 * 59.99762 * 15 12 11 45 45 H 1.09002 * 109.46990 * 179.97438 * 15 12 11 46 46 H 1.08992 * 109.47341 * 299.99969 * 15 12 11 47 47 H 1.08998 * 109.88381 * 239.52242 * 16 7 6 48 48 H 1.09007 * 110.00463 * 118.43447 * 16 7 6 49 49 H 1.09001 * 109.47183 * 173.54261 * 19 17 16 50 50 H 1.09004 * 109.47147 * 53.54671 * 19 17 16 51 51 H 0.96992 * 120.00013 * 359.97438 * 20 19 17 52 52 H 0.97000 * 119.99327 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8908 0.5795 -0.4488 6 6 3.9695 1.6995 1.4320 7 7 5.2613 2.3836 1.2401 8 6 6.2854 2.3881 2.1162 9 8 7.3065 2.9869 1.8524 10 6 6.1616 1.6495 3.4240 11 8 7.3688 1.8020 4.1733 12 6 7.3559 1.1367 5.4379 13 6 7.1447 -0.3633 5.2227 14 6 8.6907 1.3673 6.1491 15 6 6.2184 1.6940 6.2959 16 6 5.2476 3.0591 -0.0657 17 6 3.8859 2.7547 -0.7247 18 1 3.1813 3.5672 -0.5472 19 6 4.0543 2.5052 -2.2248 20 7 4.4842 3.7426 -2.8806 21 6 4.7010 3.7616 -4.2325 22 1 4.5555 2.8640 -4.8154 23 6 5.1078 4.9342 -4.8539 24 7 5.2856 6.0280 -4.1436 25 14 5.4043 4.9598 -6.6980 26 1 4.1508 4.5949 -7.4060 27 1 5.8289 6.3212 -7.1124 28 1 6.4691 3.9835 -7.0418 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 4.1159 0.7495 1.9459 35 1 3.2841 2.3340 1.9939 36 1 5.3261 2.0565 3.9935 37 1 5.9870 0.5915 3.2285 38 1 7.9551 -0.7604 4.6114 39 1 7.1353 -0.8711 6.1872 40 1 6.1936 -0.5273 4.7162 41 1 8.8409 2.4360 6.3024 42 1 8.6810 0.8594 7.1135 43 1 9.5014 0.9705 5.5381 44 1 5.2672 1.5300 5.7893 45 1 6.2083 1.1861 7.2603 46 1 6.3688 2.7625 6.4492 47 1 6.0553 2.6763 -0.6895 48 1 5.3619 4.1346 0.0697 49 1 3.1036 2.1809 -2.6482 50 1 4.8051 1.7308 -2.3823 51 1 4.6152 4.5486 -2.3571 52 1 5.1320 6.0145 -3.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691316471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:54 Heat of formation + Delta-G solvation = -115.518709 kcal Electronic energy + Delta-G solvation = -29187.194398 eV Core-core repulsion = 25187.449012 eV Total energy + Delta-G solvation = -3999.745385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41363 -39.34795 -38.25839 -36.65272 -34.93261 -33.72968 -32.49152 -31.40300 -29.89799 -28.69452 -28.21546 -27.81459 -27.24893 -24.85719 -23.51969 -22.95831 -22.04090 -20.54153 -20.16121 -19.47693 -17.70706 -17.28058 -17.13987 -16.38960 -16.22898 -16.14626 -15.60644 -15.11696 -14.76161 -14.62688 -14.48574 -14.06263 -13.73998 -13.68277 -13.49177 -13.43947 -13.34667 -12.83439 -12.76603 -12.60408 -12.49990 -12.36864 -12.25753 -12.14219 -12.10265 -11.86354 -11.62561 -11.51218 -11.15886 -11.04589 -10.92693 -10.70507 -10.65142 -10.43266 -9.98194 -9.90569 -9.84638 -9.61820 -9.12879 -8.86817 -8.67396 -6.99306 -6.07125 -3.07526 2.49479 2.56719 3.35247 3.54201 3.58300 3.72269 3.75796 4.26709 4.32923 4.44351 4.46122 4.61839 4.65997 4.74675 4.77771 4.86807 4.87795 4.91352 5.03035 5.09794 5.12875 5.16694 5.17515 5.24653 5.32145 5.35464 5.36363 5.47562 5.48007 5.54808 5.63076 5.63965 5.65856 5.72843 5.81936 5.87283 5.90399 5.90964 5.95076 6.13081 6.18502 6.22429 6.61089 6.66298 6.87314 7.09821 7.41536 7.82266 8.13610 8.78864 9.24724 10.11121 10.25277 11.41385 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002903 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.016223 B = 9643.016497 C =11813.812513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.085 3.915 5 H 0.083 0.917 6 C 0.080 3.920 7 N -0.616 5.616 8 C 0.527 3.473 9 O -0.512 6.512 10 C 0.046 3.954 11 O -0.350 6.350 12 C 0.104 3.896 13 C -0.180 4.180 14 C -0.137 4.137 15 C -0.180 4.180 16 C 0.119 3.881 17 C -0.102 4.102 18 H 0.096 0.904 19 C 0.172 3.828 20 N -0.743 5.743 21 C -0.333 4.333 22 H 0.064 0.936 23 C -0.044 4.044 24 N -0.942 5.942 25 Si 1.081 2.919 26 H -0.295 1.295 27 H -0.285 1.285 28 H -0.295 1.295 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.029 0.971 50 H 0.021 0.979 51 H 0.368 0.632 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -16.766 22.292 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.026 3.974 5 H 0.101 0.899 6 C -0.044 4.044 7 N -0.354 5.354 8 C 0.314 3.686 9 O -0.386 6.386 10 C -0.034 4.034 11 O -0.269 6.269 12 C 0.064 3.936 13 C -0.238 4.238 14 C -0.194 4.194 15 C -0.238 4.238 16 C -0.002 4.002 17 C -0.121 4.121 18 H 0.114 0.886 19 C 0.044 3.956 20 N -0.388 5.388 21 C -0.464 4.464 22 H 0.082 0.918 23 C -0.242 4.242 24 N -0.587 5.587 25 Si 0.911 3.089 26 H -0.223 1.223 27 H -0.210 1.210 28 H -0.223 1.223 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.046 0.954 50 H 0.039 0.961 51 H 0.201 0.799 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.663 -15.409 20.720 26.080 hybrid contribution -0.690 -1.259 1.577 2.133 sum -4.354 -16.668 22.297 28.177 Atomic orbital electron populations 1.21742 0.93657 1.02134 1.03339 1.22561 0.95739 0.83850 1.00077 1.87976 1.19537 1.26321 1.94617 1.23187 0.81575 0.99120 0.93524 0.89938 1.22765 0.85508 0.97371 0.98787 1.48304 1.14688 1.52926 1.19472 1.19864 0.82497 0.81697 0.84536 1.90769 1.28204 1.43074 1.76602 1.22175 0.89758 1.00006 0.91430 1.88119 1.34707 1.74062 1.29991 1.21606 0.96698 0.91457 0.83801 1.22459 1.02538 0.95946 1.02812 1.21742 0.95121 1.03046 0.99508 1.22461 0.98452 1.02458 1.00404 1.22050 0.97935 0.98168 0.82079 1.22593 0.95600 0.97090 0.96862 0.88580 1.20551 0.97289 0.90476 0.87299 1.42330 1.82935 1.07445 1.06124 1.19991 1.43781 0.98381 0.84268 0.91780 1.25785 0.99775 0.91908 1.06730 1.70879 1.51963 1.28317 1.07571 0.83240 0.75843 0.75653 0.74137 1.22277 1.21004 1.22272 0.91929 0.91540 0.91209 0.93000 0.93564 0.90768 0.90107 0.90221 0.90357 0.91433 0.91259 0.92269 0.91552 0.91025 0.91572 0.92230 0.91267 0.91412 0.90158 0.90693 0.95358 0.96142 0.79910 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.05 0.50 6.49 37.16 0.24 0.75 16 3 O -0.37 -4.57 10.15 -35.23 -0.36 -4.93 16 4 C 0.09 1.07 2.99 -24.58 -0.07 0.99 16 5 H 0.08 0.97 7.74 -51.93 -0.40 0.57 16 6 C 0.08 0.85 6.43 -2.53 -0.02 0.84 16 7 N -0.62 -8.77 3.33 -170.51 -0.57 -9.33 16 8 C 0.53 8.18 7.93 -10.98 -0.09 8.09 16 9 O -0.51 -10.51 16.83 -14.35 -0.24 -10.75 16 10 C 0.05 0.51 4.62 36.01 0.17 0.68 16 11 O -0.35 -4.50 9.52 -55.14 -0.52 -5.02 16 12 C 0.10 0.90 1.14 -90.62 -0.10 0.80 16 13 C -0.18 -1.25 8.25 37.16 0.31 -0.94 16 14 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 15 C -0.18 -1.27 8.25 37.16 0.31 -0.96 16 16 C 0.12 2.02 6.15 -3.07 -0.02 2.00 16 17 C -0.10 -1.65 2.75 -88.79 -0.24 -1.89 16 18 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 19 C 0.17 3.46 5.58 -4.04 -0.02 3.44 16 20 N -0.74 -18.95 5.44 -59.91 -0.33 -19.27 16 21 C -0.33 -9.58 9.99 -15.06 -0.15 -9.73 16 22 H 0.06 1.81 7.83 -52.48 -0.41 1.39 16 23 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 24 N -0.94 -29.79 13.70 55.49 0.76 -29.03 16 25 Si 1.08 26.44 29.92 -169.99 -5.09 21.35 16 26 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.58 7.48 -51.93 -0.39 0.20 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.71 6.42 -51.93 -0.33 0.38 16 37 H 0.08 0.69 6.12 -51.93 -0.32 0.37 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.38 6.54 -51.92 -0.34 0.04 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 1.53 7.77 -51.93 -0.40 1.13 16 48 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 51 H 0.37 9.61 6.36 -40.82 -0.26 9.35 16 52 H 0.26 7.96 6.77 -40.82 -0.28 7.68 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -36.29 413.27 -8.64 -44.93 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -9.45 Total: 4.77 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 0.92 Total: 1.06 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.13 Total: -57.64 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.12 Total: -20.70 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.09 Total: 21.35 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.29 -8.64 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691316471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.587 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds