Wall clock time and date at job start Tue Mar 31 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46856 * 2 1 4 4 C 1.42899 * 113.99489 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47039 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.47116 * 64.99875 * 5 4 3 7 7 C 1.42898 * 114.00091 * 179.97438 * 6 5 4 8 8 C 1.50692 * 109.47184 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00011 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00133 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.63008 * 179.97438 * 10 8 7 12 12 C 1.53185 * 108.78148 * 233.58701 * 11 10 8 13 13 C 1.53039 * 109.31257 * 305.37199 * 12 11 10 14 14 C 1.53006 * 109.46170 * 181.38347 * 13 12 11 15 15 H 1.08998 * 109.46505 * 299.96731 * 14 13 12 16 16 C 1.52997 * 109.47127 * 59.96860 * 14 13 12 17 17 N 1.46500 * 109.47249 * 179.97438 * 14 13 12 18 18 C 1.36930 * 119.99841 * 154.99846 * 17 14 13 19 19 H 1.07999 * 120.00622 * 359.97438 * 18 17 14 20 20 C 1.38817 * 119.99916 * 179.97438 * 18 17 14 21 21 N 1.31622 * 120.00468 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99959 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47451 * 89.99447 * 22 20 18 24 24 H 1.48497 * 109.47471 * 210.00073 * 22 20 18 25 25 H 1.48503 * 109.47044 * 329.99876 * 22 20 18 26 26 C 1.53043 * 109.52972 * 61.37047 * 13 12 11 27 27 C 1.46919 * 120.63100 * 359.97438 * 10 8 7 28 28 H 1.08999 * 109.46644 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47161 * 300.00119 * 1 2 3 30 30 H 1.09002 * 109.46522 * 60.00298 * 1 2 3 31 31 H 1.08991 * 109.47161 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.46522 * 119.99702 * 2 1 3 33 33 H 1.09002 * 109.47358 * 60.00414 * 4 3 2 34 34 H 1.08998 * 109.47632 * 300.00086 * 4 3 2 35 35 H 1.09000 * 109.46962 * 305.00402 * 5 4 3 36 36 H 1.08999 * 109.47789 * 185.00438 * 5 4 3 37 37 H 1.09000 * 109.46630 * 60.00640 * 7 6 5 38 38 H 1.08999 * 109.47860 * 300.00823 * 7 6 5 39 39 H 1.09010 * 109.58200 * 113.80074 * 11 10 8 40 40 H 1.09003 * 109.58882 * 353.38326 * 11 10 8 41 41 H 1.08997 * 109.50024 * 185.41444 * 12 11 10 42 42 H 1.09003 * 109.49641 * 65.31533 * 12 11 10 43 43 H 1.09004 * 109.46034 * 301.35521 * 13 12 11 44 44 H 1.09002 * 109.47153 * 180.02562 * 16 14 13 45 45 H 1.09001 * 109.46832 * 60.00321 * 16 14 13 46 46 H 1.09004 * 109.47261 * 300.00303 * 16 14 13 47 47 H 0.97001 * 119.99547 * 334.99826 * 17 14 13 48 48 H 0.96993 * 120.00314 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.49864 * 58.57631 * 26 13 12 50 50 H 1.08999 * 109.49867 * 178.68274 * 26 13 12 51 51 H 1.08998 * 109.58707 * 246.19842 * 27 10 8 52 52 H 1.09000 * 109.58509 * 6.48672 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 8 3.3975 3.5461 1.2204 7 6 3.7193 4.9347 1.3223 8 6 3.2248 5.4694 2.6415 9 8 2.6536 4.7338 3.4183 10 7 3.4174 6.7652 2.9582 11 6 2.9406 7.3013 4.2404 12 6 2.0671 8.5297 3.9672 13 6 2.8545 9.5324 3.1205 14 6 1.9975 10.7758 2.8745 15 1 1.0872 10.4909 2.3468 16 6 1.6309 11.4159 4.2149 17 7 2.7512 11.7360 2.0645 18 6 2.0865 12.6534 1.2953 19 1 1.0067 12.6689 1.2854 20 6 2.8007 13.5636 0.5282 21 7 2.1620 14.4452 -0.2115 22 14 4.6685 13.5364 0.5447 23 1 5.1598 12.6286 -0.5228 24 1 5.1857 14.9077 0.3052 25 1 5.1448 13.0513 1.8649 26 6 3.2215 8.8927 1.7795 27 6 4.1081 7.6686 2.0279 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 3.3499 3.4408 -0.8424 36 1 4.9083 3.0254 -0.0893 37 1 3.2419 5.4789 0.5074 38 1 4.7999 5.0629 1.2607 39 1 3.7931 7.5887 4.8560 40 1 2.3530 6.5429 4.7578 41 1 1.7857 8.9936 4.9125 42 1 1.1693 8.2254 3.4292 43 1 3.7648 9.8174 3.6481 44 1 1.0200 12.3015 4.0396 45 1 2.5413 11.7007 4.7424 46 1 1.0701 10.7014 4.8175 47 1 3.7210 11.7218 2.0731 48 1 2.6610 15.0809 -0.7478 49 1 2.3126 8.5848 1.2624 50 1 3.7619 9.6149 1.1676 51 1 5.0558 7.9860 2.4627 52 1 4.2929 7.1517 1.0862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691693025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:03 Heat of formation + Delta-G solvation = -119.898536 kcal Electronic energy + Delta-G solvation = -28660.852717 eV Core-core repulsion = 24660.917408 eV Total energy + Delta-G solvation = -3999.935309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34161 -38.78890 -38.09363 -37.19664 -35.53857 -33.02003 -32.22415 -31.41548 -30.94881 -29.88594 -28.91961 -27.43286 -25.28849 -23.51310 -23.09051 -22.93452 -22.72442 -21.15360 -19.90183 -19.14729 -17.82810 -17.45679 -17.27368 -16.90378 -16.28317 -16.14239 -15.61183 -15.07460 -14.97700 -14.69791 -14.33562 -14.08374 -13.93886 -13.77683 -13.44220 -13.38417 -13.09074 -12.84592 -12.58870 -12.53803 -12.46637 -12.34486 -12.23239 -11.78765 -11.69008 -11.58598 -11.40025 -11.27943 -11.13318 -10.98017 -10.82157 -10.42918 -10.34754 -10.12134 -10.00753 -9.92340 -9.89713 -9.69277 -9.58243 -8.94957 -8.66365 -7.27311 -5.77812 -3.12829 2.51799 2.58968 3.33084 3.33513 3.35733 3.42537 3.57142 4.37086 4.56703 4.63069 4.72287 4.72863 4.78448 4.85512 4.88425 4.91551 4.96283 4.99045 5.03306 5.05610 5.08243 5.12670 5.26421 5.31800 5.38465 5.44069 5.44499 5.57729 5.61390 5.64150 5.75331 5.81934 5.84122 5.91322 6.00667 6.11836 6.19605 6.31405 6.35154 6.40732 6.53182 6.59943 6.75192 6.84857 6.91752 7.03651 7.30550 7.99343 8.10829 8.41429 9.20213 9.92618 10.12934 11.40782 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002272 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.720840 B =12321.713454 C =12910.669392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.355 6.355 7 C 0.044 3.956 8 C 0.517 3.483 9 O -0.525 6.525 10 N -0.608 5.608 11 C 0.114 3.886 12 C -0.128 4.128 13 C -0.093 4.093 14 C 0.183 3.817 15 H 0.054 0.946 16 C -0.167 4.167 17 N -0.747 5.747 18 C -0.238 4.238 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.126 4.126 27 C 0.103 3.897 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.359 0.641 48 H 0.259 0.741 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -26.214 2.336 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.274 6.274 7 C -0.036 4.036 8 C 0.304 3.696 9 O -0.400 6.400 10 N -0.344 5.344 11 C -0.008 4.008 12 C -0.166 4.166 13 C -0.113 4.113 14 C 0.073 3.927 15 H 0.072 0.928 16 C -0.227 4.227 17 N -0.390 5.390 18 C -0.368 4.368 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.204 1.204 26 C -0.164 4.164 27 C -0.019 4.019 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.192 0.808 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.538 -26.427 2.767 26.956 hybrid contribution 1.786 0.276 -0.396 1.850 sum 6.324 -26.151 2.371 27.009 Atomic orbital electron populations 1.21741 0.93648 1.02128 1.03428 1.22457 0.95851 0.83821 0.99811 1.88000 1.20313 1.26224 1.95349 1.22475 0.82478 0.95287 1.00843 1.22602 0.98391 0.92899 0.87669 1.88074 1.80764 1.20770 1.37743 1.22254 1.00351 0.84415 0.96536 1.20153 0.79689 0.81783 0.87975 1.90708 1.41378 1.56762 1.51176 1.48094 1.58191 1.08466 1.19657 1.21637 0.98368 0.96380 0.84373 1.22012 0.98684 0.94832 1.01111 1.21427 0.99167 0.95412 0.95271 1.20195 0.94047 0.87442 0.90983 0.92769 1.22463 1.00698 1.00822 0.98682 1.42784 1.04139 1.38599 1.53477 1.19067 0.92970 1.07502 1.17269 0.89307 1.24675 0.97119 0.98137 0.99412 1.69697 1.34200 1.21973 1.32451 0.86572 0.87571 0.77013 0.77487 1.21157 1.21890 1.20378 1.21913 1.00329 0.95845 0.98285 1.21909 0.95768 0.91563 0.92690 0.91185 0.91571 0.91858 0.93629 0.93396 0.91747 0.92333 0.92045 0.91560 0.90001 0.90422 0.91569 0.89158 0.90160 0.91379 0.91436 0.92541 0.93718 0.93928 0.80798 0.93127 0.91306 0.89528 0.91104 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.24 10.31 -40.08 -0.41 -4.65 16 4 C 0.07 0.55 6.32 37.16 0.23 0.79 16 5 C 0.06 0.53 6.32 37.16 0.23 0.76 16 6 O -0.36 -4.51 9.84 -59.73 -0.59 -5.10 16 7 C 0.04 0.47 4.76 36.00 0.17 0.64 16 8 C 0.52 7.12 7.77 -10.99 -0.09 7.03 16 9 O -0.52 -9.37 15.91 -14.35 -0.23 -9.59 16 10 N -0.61 -7.36 2.97 -172.79 -0.51 -7.87 16 11 C 0.11 1.36 6.43 -3.71 -0.02 1.33 16 12 C -0.13 -1.56 5.04 -26.62 -0.13 -1.70 16 13 C -0.09 -1.30 1.79 -90.57 -0.16 -1.47 16 14 C 0.18 3.26 2.47 -67.93 -0.17 3.09 16 15 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 16 C -0.17 -2.79 9.14 37.16 0.34 -2.45 16 17 N -0.75 -16.52 4.21 -53.43 -0.22 -16.74 16 18 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 21 N -0.94 -28.89 13.97 55.49 0.78 -28.12 16 22 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 26 C -0.13 -1.67 5.22 -26.62 -0.14 -1.81 16 27 C 0.10 1.08 6.34 -3.72 -0.02 1.06 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 38 H 0.08 0.61 7.94 -51.93 -0.41 0.19 16 39 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 41 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 47 H 0.36 7.78 5.44 -40.82 -0.22 7.56 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.09 1.29 7.41 -51.93 -0.38 0.91 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -35.05 409.05 -8.65 -43.70 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -9.53 Total: 4.97 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.62 Total: 0.59 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.04 Total: -52.73 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.23 Total: -19.35 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.05 -8.65 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691693025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.200 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds