Wall clock time and date at job start Tue Mar 31 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46656 * 2 1 4 4 C 1.42903 * 113.99611 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.57876 * 29.84577 * 4 3 2 6 6 C 1.53102 * 109.45370 * 269.63493 * 4 3 2 7 7 O 1.42902 * 109.48695 * 297.61712 * 6 4 3 8 8 C 1.42902 * 114.09934 * 298.88806 * 7 6 4 9 9 C 1.53092 * 109.41736 * 61.15588 * 8 7 6 10 10 C 1.53180 * 109.52003 * 149.99859 * 4 3 2 11 11 H 1.09007 * 109.54487 * 182.87903 * 10 4 3 12 12 C 1.53002 * 109.54740 * 303.05854 * 10 4 3 13 13 C 1.50695 * 109.47031 * 184.82098 * 12 10 4 14 14 O 1.21284 * 120.00403 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99651 * 179.97438 * 13 12 10 16 16 C 1.46502 * 120.00138 * 0.02562 * 15 13 12 17 17 C 1.46500 * 119.99786 * 180.02562 * 15 13 12 18 18 C 1.53006 * 109.47298 * 270.00367 * 17 15 13 19 19 N 1.46501 * 109.47121 * 180.02562 * 18 17 15 20 20 C 1.46500 * 120.00231 * 90.00073 * 19 18 17 21 21 C 1.36940 * 119.99479 * 269.99734 * 19 18 17 22 22 H 1.07996 * 120.00090 * 23.05139 * 21 19 18 23 23 C 1.38811 * 119.99664 * 203.04830 * 21 19 18 24 24 N 1.31625 * 120.00184 * 12.92631 * 23 21 19 25 25 Si 1.86797 * 119.99983 * 192.92835 * 23 21 19 26 26 H 1.48501 * 109.46912 * 60.00220 * 25 23 21 27 27 H 1.48505 * 109.47176 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47419 * 300.00201 * 25 23 21 29 29 H 1.09002 * 109.47625 * 60.00033 * 1 2 3 30 30 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47211 * 299.99424 * 1 2 3 32 32 H 1.08999 * 109.47211 * 240.00576 * 2 1 3 33 33 H 1.08998 * 109.47135 * 119.99913 * 2 1 3 34 34 H 1.08997 * 109.40626 * 177.63484 * 6 4 3 35 35 H 1.08999 * 109.48967 * 57.64689 * 6 4 3 36 36 H 1.09007 * 109.48280 * 301.17974 * 8 7 6 37 37 H 1.09002 * 109.49674 * 181.14888 * 8 7 6 38 38 H 1.09000 * 109.52540 * 182.48566 * 9 8 7 39 39 H 1.09002 * 109.57353 * 62.32546 * 9 8 7 40 40 H 1.08994 * 109.46617 * 64.82035 * 12 10 4 41 41 H 1.08999 * 109.46364 * 304.82224 * 12 10 4 42 42 H 1.08997 * 109.46831 * 269.99414 * 16 15 13 43 43 H 1.08996 * 109.47004 * 29.99499 * 16 15 13 44 44 H 1.08995 * 109.47073 * 149.99422 * 16 15 13 45 45 H 1.08999 * 109.46967 * 150.00719 * 17 15 13 46 46 H 1.08994 * 109.47571 * 30.00495 * 17 15 13 47 47 H 1.09007 * 109.46832 * 300.00311 * 18 17 15 48 48 H 1.09000 * 109.47195 * 59.99875 * 18 17 15 49 49 H 1.09001 * 109.46693 * 95.11790 * 20 19 18 50 50 H 1.08996 * 109.46982 * 215.12411 * 20 19 18 51 51 H 1.09006 * 109.46889 * 335.12303 * 20 19 18 52 52 H 0.96997 * 120.00039 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8650 0.6012 -0.5120 6 6 3.9390 1.5094 1.4428 7 8 3.4159 2.6695 2.0931 8 6 3.8083 3.9037 1.4891 9 6 3.2931 3.9518 0.0483 10 6 3.8420 2.7471 -0.7225 11 1 4.9294 2.8082 -0.7681 12 6 3.2696 2.7434 -2.1414 13 6 3.7719 3.9517 -2.8888 14 8 4.5149 4.7382 -2.3408 15 7 3.3963 4.1578 -4.1667 16 6 2.4992 3.2075 -4.8289 17 6 3.8850 5.3322 -4.8935 18 6 2.9156 6.4982 -4.6893 19 7 3.4041 7.6724 -5.4166 20 6 2.9953 7.8961 -6.8055 21 6 4.2428 8.5608 -4.7981 22 1 4.8357 8.2448 -3.9526 23 6 4.3308 9.8676 -5.2580 24 7 3.4391 10.3268 -6.1103 25 14 5.7148 10.9743 -4.6673 26 1 7.0213 10.3743 -5.0392 27 1 5.5856 12.3104 -5.3025 28 1 5.6383 11.1178 -3.1913 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0281 1.5531 1.4420 35 1 3.6113 0.6160 1.9744 36 1 4.8958 3.9788 1.4889 37 1 3.3867 4.7353 2.0538 38 1 3.6288 4.8729 -0.4281 39 1 2.2036 3.9181 0.0488 40 1 2.1811 2.7720 -2.0941 41 1 3.5872 1.8381 -2.6588 42 1 3.0886 2.4325 -5.3188 43 1 1.8427 2.7510 -4.0882 44 1 1.8990 3.7320 -5.5722 45 1 3.9542 5.0990 -5.9560 46 1 4.8699 5.6084 -4.5173 47 1 1.9306 6.2219 -5.0656 48 1 2.8464 6.7314 -3.6268 49 1 2.1355 8.5657 -6.8278 50 1 3.8199 8.3450 -7.3592 51 1 2.7262 6.9440 -7.2629 52 1 3.5004 11.2401 -6.4314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698992078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:03 Heat of formation + Delta-G solvation = -106.439115 kcal Electronic energy + Delta-G solvation = -29772.703151 eV Core-core repulsion = 25773.351487 eV Total energy + Delta-G solvation = -3999.351665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44029 -39.26570 -37.34447 -36.14864 -34.85800 -34.32537 -31.67890 -31.46946 -30.19854 -29.37850 -28.03635 -26.32656 -25.79103 -24.33875 -23.56035 -23.15332 -22.55882 -20.54577 -20.08458 -18.79406 -17.08073 -16.91421 -16.62836 -16.51104 -16.08695 -15.90502 -15.54822 -15.36729 -14.82738 -14.68707 -14.34940 -13.95282 -13.66217 -13.49340 -13.18298 -12.90874 -12.84366 -12.75367 -12.59534 -12.46669 -12.39193 -12.29199 -11.93508 -11.81403 -11.61598 -11.46208 -11.25980 -11.05764 -10.82552 -10.78438 -10.75457 -10.48623 -10.42009 -10.20132 -10.13065 -9.83137 -9.76511 -9.49349 -9.17128 -8.63127 -8.31071 -6.67012 -5.65935 -3.12880 2.89003 3.25133 3.34265 3.45844 3.49367 3.52558 3.84217 4.36860 4.50192 4.58331 4.62042 4.73483 4.78316 4.89809 4.94955 5.05533 5.10413 5.13737 5.19182 5.23951 5.34224 5.40534 5.42577 5.43904 5.49944 5.53629 5.62203 5.64732 5.68377 5.71348 5.77825 5.83975 5.86754 5.96533 6.17815 6.20730 6.27783 6.39460 6.62471 6.71102 6.79723 6.91639 7.04477 7.17669 7.39545 7.67513 7.75706 7.90370 8.44652 8.49493 9.30829 9.93103 10.41266 11.39116 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.002798 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.531726 B =10004.629097 C =11130.522267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.060 3.940 5 H 0.068 0.932 6 C 0.043 3.957 7 O -0.375 6.375 8 C 0.061 3.939 9 C -0.151 4.151 10 C -0.067 4.067 11 H 0.089 0.911 12 C -0.129 4.129 13 C 0.507 3.493 14 O -0.532 6.532 15 N -0.614 5.614 16 C 0.079 3.921 17 C 0.093 3.907 18 C 0.144 3.856 19 N -0.600 5.600 20 C 0.163 3.837 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.911 5.911 25 Si 0.905 3.095 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.032 0.968 48 H 0.049 0.951 49 H 0.031 0.969 50 H 0.041 0.959 51 H -0.004 1.004 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -24.772 9.787 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.002 3.998 5 H 0.086 0.914 6 C -0.035 4.035 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.189 4.189 10 C -0.086 4.086 11 H 0.107 0.893 12 C -0.169 4.169 13 C 0.295 3.705 14 O -0.409 6.409 15 N -0.348 5.348 16 C -0.065 4.065 17 C -0.031 4.031 18 C 0.016 3.984 19 N -0.323 5.323 20 C 0.018 3.982 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.556 5.556 25 Si 0.735 3.265 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.014 0.986 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.370 -23.993 10.125 26.259 hybrid contribution 0.975 0.293 -0.218 1.041 sum -2.395 -23.700 9.907 25.798 Atomic orbital electron populations 1.21723 0.93726 1.02029 1.03317 1.22502 0.95737 0.84290 0.99622 1.88017 1.19873 1.25619 1.94906 1.22832 0.82458 0.98350 0.96207 0.91431 1.22999 0.97711 0.89672 0.93079 1.87935 1.74106 1.13662 1.53635 1.22625 0.98750 0.86244 0.93887 1.22286 1.01769 0.99546 0.95271 1.21052 1.00733 0.93785 0.93045 0.89261 1.21650 1.03058 0.96883 0.95287 1.20599 0.81012 0.87231 0.81644 1.90691 1.36308 1.47186 1.66743 1.48001 1.48340 1.25665 1.12794 1.21759 0.93584 0.92853 0.98282 1.22491 1.00878 0.84777 0.94994 1.20973 0.93553 0.87135 0.96786 1.43853 1.55571 1.23342 1.09561 1.20804 0.99537 0.94054 0.83781 1.19212 1.15622 0.89911 1.13478 0.91248 1.25021 0.98347 0.96508 0.99827 1.70064 1.34284 1.15674 1.35593 0.86316 0.82107 0.79669 0.78379 1.21094 1.21692 1.20853 0.91803 0.91351 0.91759 0.93623 0.93710 0.92442 0.89150 0.93269 0.88803 0.88508 0.90832 0.88236 0.89660 0.93053 0.91350 0.90890 0.91687 0.89975 0.94961 0.93243 0.95046 0.94039 0.98571 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.40 6.47 37.16 0.24 0.65 16 3 O -0.36 -3.70 8.72 -42.62 -0.37 -4.07 16 4 C 0.06 0.55 2.44 -26.59 -0.06 0.49 16 5 H 0.07 0.49 7.79 -51.93 -0.40 0.08 16 6 C 0.04 0.40 6.48 37.21 0.24 0.64 16 7 O -0.37 -4.60 10.70 -42.62 -0.46 -5.06 16 8 C 0.06 0.72 6.84 37.21 0.25 0.98 16 9 C -0.15 -1.95 4.97 -26.59 -0.13 -2.08 16 10 C -0.07 -0.75 1.75 -90.43 -0.16 -0.91 16 11 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 12 C -0.13 -1.41 3.48 -27.88 -0.10 -1.51 16 13 C 0.51 7.73 7.41 -10.99 -0.08 7.65 16 14 O -0.53 -10.24 13.57 5.55 0.08 -10.16 16 15 N -0.61 -9.08 2.87 -181.58 -0.52 -9.60 16 16 C 0.08 0.81 10.24 59.85 0.61 1.42 16 17 C 0.09 1.72 5.73 -4.04 -0.02 1.70 16 18 C 0.14 3.13 5.97 -4.04 -0.02 3.10 16 19 N -0.60 -15.67 2.92 -181.11 -0.53 -16.20 16 20 C 0.16 4.07 8.98 59.85 0.54 4.61 16 21 C -0.25 -7.28 9.65 -15.06 -0.15 -7.43 16 22 H 0.07 2.02 7.86 -52.49 -0.41 1.60 16 23 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 24 N -0.91 -27.30 10.71 55.49 0.59 -26.71 16 25 Si 0.91 22.78 29.57 -169.99 -5.03 17.75 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.04 0.29 7.86 -51.93 -0.41 -0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.50 6.05 -51.93 -0.31 1.19 16 39 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 40 H 0.10 1.06 7.03 -51.93 -0.37 0.70 16 41 H 0.09 0.75 8.11 -51.93 -0.42 0.32 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.57 6.44 -51.93 -0.33 0.23 16 44 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 45 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 46 H 0.08 1.76 7.42 -51.93 -0.39 1.37 16 47 H 0.03 0.65 8.07 -51.92 -0.42 0.23 16 48 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 49 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 50 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 51 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 52 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -33.99 406.76 -8.30 -42.28 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -9.64 Total: -2.97 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 1.45 Total: 8.61 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.46 Total: -52.51 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.75 Total: -19.29 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.99 -8.30 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698992078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.158 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds