Wall clock time and date at job start Tue Mar 31 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47479 * 2 1 4 4 C 1.42895 * 114.00013 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.57752 * 330.15849 * 4 3 2 6 6 C 1.53096 * 109.52376 * 90.31343 * 4 3 2 7 7 O 1.42904 * 109.41648 * 177.51377 * 6 4 3 8 8 C 1.42907 * 114.09769 * 298.84601 * 7 6 4 9 9 C 1.53093 * 109.41799 * 61.15652 * 8 7 6 10 10 C 1.53182 * 109.15962 * 302.39032 * 9 8 7 11 11 H 1.09001 * 109.54591 * 297.02417 * 10 9 8 12 12 C 1.52999 * 109.54087 * 176.84687 * 10 9 8 13 13 C 1.50700 * 109.47172 * 65.00314 * 12 10 9 14 14 O 1.21283 * 119.99722 * 359.97438 * 13 12 10 15 15 N 1.34771 * 120.00216 * 179.97438 * 13 12 10 16 16 C 1.46506 * 120.00084 * 0.02562 * 15 13 12 17 17 C 1.46496 * 120.00157 * 179.97438 * 15 13 12 18 18 C 1.52998 * 109.47337 * 270.00189 * 17 15 13 19 19 C 1.53004 * 109.47251 * 180.02562 * 18 17 15 20 20 N 1.46501 * 109.47076 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99749 * 179.97438 * 20 19 18 22 22 H 1.08006 * 119.99948 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00156 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99371 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47298 * 90.00241 * 25 23 21 27 27 H 1.48505 * 109.46741 * 210.00386 * 25 23 21 28 28 H 1.48499 * 109.46928 * 329.99696 * 25 23 21 29 29 H 1.09006 * 109.47136 * 59.99708 * 1 2 3 30 30 H 1.08997 * 109.47711 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47137 * 300.00268 * 1 2 3 32 32 H 1.09002 * 109.47137 * 239.99732 * 2 1 3 33 33 H 1.08999 * 109.46760 * 120.00189 * 2 1 3 34 34 H 1.08992 * 109.47823 * 57.53459 * 6 4 3 35 35 H 1.08994 * 109.48176 * 297.49588 * 6 4 3 36 36 H 1.09002 * 109.47693 * 301.16871 * 8 7 6 37 37 H 1.09002 * 109.49122 * 181.14601 * 8 7 6 38 38 H 1.08993 * 109.52025 * 182.48659 * 9 8 7 39 39 H 1.09003 * 109.52268 * 62.29541 * 9 8 7 40 40 H 1.09000 * 109.47102 * 305.00008 * 12 10 9 41 41 H 1.08998 * 109.47172 * 185.00066 * 12 10 9 42 42 H 1.09001 * 109.47060 * 270.00360 * 16 15 13 43 43 H 1.09004 * 109.47073 * 29.99849 * 16 15 13 44 44 H 1.09000 * 109.47212 * 149.99932 * 16 15 13 45 45 H 1.09001 * 109.47057 * 30.00532 * 17 15 13 46 46 H 1.08999 * 109.47333 * 150.00092 * 17 15 13 47 47 H 1.08998 * 109.47036 * 299.99480 * 18 17 15 48 48 H 1.08992 * 109.47282 * 59.99942 * 18 17 15 49 49 H 1.09003 * 109.46453 * 300.00095 * 19 18 17 50 50 H 1.08999 * 109.47518 * 59.99843 * 19 18 17 51 51 H 0.96992 * 120.00113 * 359.97438 * 20 19 18 52 52 H 0.97007 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8655 0.6006 0.5101 6 6 3.9397 1.5084 -1.4437 7 8 5.3585 1.6793 -1.4417 8 6 5.7996 2.8889 -0.8216 9 6 5.3655 2.8959 0.6465 10 6 3.8429 2.7467 0.7213 11 1 3.3685 3.6031 0.2420 12 6 3.4072 2.6736 2.1861 13 6 3.7124 3.9830 2.8669 14 8 4.2281 4.8855 2.2420 15 7 3.4123 4.1511 4.1699 16 6 2.7898 3.0607 4.9249 17 6 3.7096 5.4237 4.8318 18 6 5.1183 5.3725 5.4266 19 6 5.4285 6.7014 6.1185 20 7 6.7772 6.6521 6.6885 21 6 7.2767 7.7359 7.3600 22 1 6.6762 8.6269 7.4698 23 6 8.5544 7.6891 7.9006 24 7 9.2859 6.6030 7.7672 25 14 9.2355 9.1673 8.8174 26 1 8.8910 9.0583 10.2577 27 1 10.7119 9.2081 8.6631 28 1 8.6450 10.4105 8.2598 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.4737 2.3441 -1.9655 35 1 3.6866 0.5769 -1.9499 36 1 5.3579 3.7428 -1.3354 37 1 6.8862 2.9521 -0.8797 38 1 5.6625 3.8369 1.1095 39 1 5.8391 2.0656 1.1703 40 1 3.9471 1.8696 2.6861 41 1 2.3360 2.4787 2.2373 42 1 1.7052 3.1416 4.8525 43 1 3.1111 2.1039 4.5130 44 1 3.0901 3.1252 5.9707 45 1 3.6514 6.2337 4.1048 46 1 2.9853 5.5973 5.6277 47 1 5.1764 4.5626 6.1537 48 1 5.8426 5.1990 4.6308 49 1 5.3702 7.5116 5.3916 50 1 4.7042 6.8745 6.9144 51 1 7.3162 5.8518 6.5902 52 1 10.1789 6.5704 8.1446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699522498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:56 Heat of formation + Delta-G solvation = -129.454801 kcal Electronic energy + Delta-G solvation = -28893.211122 eV Core-core repulsion = 24892.861422 eV Total energy + Delta-G solvation = -4000.349700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60719 -39.47684 -37.78444 -36.27559 -34.80092 -34.52142 -32.29366 -31.88478 -30.34382 -29.84675 -28.72148 -26.93083 -25.39571 -24.03008 -23.56167 -22.95936 -22.42672 -20.93892 -20.42756 -19.08473 -17.60746 -17.06242 -17.02824 -16.69156 -16.33343 -15.94595 -15.70104 -15.54058 -15.04450 -14.78257 -14.48887 -14.32091 -13.80714 -13.77428 -13.33086 -13.18411 -13.08588 -13.02827 -12.86681 -12.70808 -12.63239 -12.52906 -12.15815 -11.89934 -11.84250 -11.78145 -11.46143 -11.17781 -10.97641 -10.90596 -10.83221 -10.70566 -10.67272 -10.37427 -10.29424 -10.05493 -9.78556 -9.68285 -9.39041 -8.83860 -8.63852 -6.88498 -5.73085 -3.01633 2.63078 2.96178 3.10586 3.45904 3.50661 3.52921 3.72108 4.22263 4.33858 4.47227 4.62450 4.63134 4.65298 4.72453 4.82462 4.86112 4.93419 4.94874 5.07064 5.13332 5.19984 5.21755 5.25159 5.29795 5.35912 5.42264 5.45687 5.49273 5.50770 5.59405 5.59836 5.61874 5.70347 5.72611 5.77665 5.94949 6.01930 6.08186 6.12882 6.32794 6.41670 6.56270 6.68844 6.89104 6.91686 6.99953 7.36328 7.73003 8.18761 8.45954 9.56683 10.15462 10.50126 11.50030 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002171 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.566587 B =12895.605948 C =13955.374572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.376 6.376 4 C 0.062 3.938 5 H 0.070 0.930 6 C 0.043 3.957 7 O -0.380 6.380 8 C 0.058 3.942 9 C -0.155 4.155 10 C -0.068 4.068 11 H 0.088 0.912 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.533 6.533 15 N -0.616 5.616 16 C 0.077 3.923 17 C 0.118 3.882 18 C -0.138 4.138 19 C 0.156 3.844 20 N -0.733 5.733 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.020 0.980 50 H 0.018 0.982 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.915 -17.224 -16.970 30.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.004 3.996 5 H 0.088 0.912 6 C -0.034 4.034 7 O -0.299 6.299 8 C -0.018 4.018 9 C -0.193 4.193 10 C -0.087 4.087 11 H 0.107 0.893 12 C -0.171 4.171 13 C 0.301 3.699 14 O -0.410 6.410 15 N -0.350 5.350 16 C -0.066 4.066 17 C -0.004 4.004 18 C -0.177 4.177 19 C 0.028 3.972 20 N -0.377 5.377 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.038 0.962 50 H 0.036 0.964 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.632 -16.546 -17.305 30.338 hybrid contribution 0.532 0.321 0.844 1.048 sum -18.101 -16.225 -16.461 29.357 Atomic orbital electron populations 1.21747 0.93615 1.02283 1.03238 1.22549 0.95669 0.83817 1.00174 1.87936 1.20240 1.26409 1.94996 1.22809 0.81444 0.98789 0.96573 0.91195 1.22979 0.82067 1.02420 0.95950 1.87945 1.20753 1.41821 1.79363 1.22681 1.00376 0.86548 0.92193 1.22430 0.94150 1.04992 0.97712 1.21040 0.96457 0.97155 0.94060 0.89321 1.21689 1.03787 0.95923 0.95734 1.20620 0.78029 0.89775 0.81525 1.90679 1.42638 1.43564 1.64141 1.47928 1.61517 1.15495 1.10028 1.21809 0.97560 0.89738 0.97518 1.21485 0.96871 0.85086 0.96989 1.22042 0.95911 0.99542 1.00165 1.20544 0.88463 0.93598 0.94584 1.42352 1.12511 1.17133 1.65748 1.19253 0.97574 0.93687 1.26399 0.91151 1.24763 0.97050 0.97630 1.01804 1.69671 1.10769 1.27254 1.50653 0.86161 0.78128 0.82094 0.79661 1.21750 1.21766 1.20741 0.91829 0.91099 0.91767 0.93389 0.93214 0.92257 0.89049 0.92732 0.88368 0.87770 0.91342 0.89173 0.88275 0.92616 0.91221 0.90614 0.89781 0.90633 0.92107 0.91629 0.96215 0.96448 0.78344 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.39 16 2 C 0.05 0.33 6.47 37.16 0.24 0.57 16 3 O -0.38 -3.23 9.39 -35.23 -0.33 -3.56 16 4 C 0.06 0.53 2.21 -26.59 -0.06 0.47 16 5 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 6 C 0.04 0.38 6.47 37.21 0.24 0.62 16 7 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 8 C 0.06 0.59 6.84 37.21 0.25 0.84 16 9 C -0.16 -1.67 5.12 -26.59 -0.14 -1.81 16 10 C -0.07 -0.69 1.64 -90.43 -0.15 -0.84 16 11 H 0.09 1.04 7.96 -51.93 -0.41 0.63 16 12 C -0.13 -1.25 3.67 -27.88 -0.10 -1.35 16 13 C 0.51 6.64 7.41 -10.99 -0.08 6.56 16 14 O -0.53 -8.82 13.55 5.55 0.08 -8.75 16 15 N -0.62 -7.37 2.87 -181.57 -0.52 -7.89 16 16 C 0.08 0.63 10.24 59.85 0.61 1.24 16 17 C 0.12 1.64 5.41 -4.04 -0.02 1.61 16 18 C -0.14 -2.36 5.65 -26.73 -0.15 -2.51 16 19 C 0.16 3.29 6.26 -4.04 -0.03 3.26 16 20 N -0.73 -19.53 5.60 -59.90 -0.34 -19.86 16 21 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 22 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 24 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 25 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.26 7.96 -51.93 -0.41 -0.16 16 33 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.67 7.96 -51.93 -0.41 0.25 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.37 6.03 -51.93 -0.31 1.06 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.73 7.40 -51.93 -0.38 0.34 16 41 H 0.10 0.84 7.62 -51.93 -0.40 0.44 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 44 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 46 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 52 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 411.63 15.07 6.20 6.20 Total: -1.00 -34.49 411.63 -8.48 -42.96 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -9.65 Total: 5.12 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 0.76 Total: 0.63 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.13 Total: -56.09 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.63 Total: -16.75 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.49 -8.48 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699522498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.490 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds