Wall clock time and date at job start Tue Mar 31 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 C 1.53005 * 109.46800 * 119.99806 * 2 1 3 5 5 H 1.09001 * 110.46880 * 61.18267 * 4 2 1 6 6 N 1.46951 * 110.52262 * 298.54549 * 4 2 1 7 7 C 1.30350 * 107.83353 * 241.23417 * 6 4 2 8 8 C 1.47928 * 130.39988 * 179.97438 * 7 6 4 9 9 C 1.39059 * 121.50104 * 0.02562 * 8 7 6 10 10 C 1.37988 * 119.53693 * 179.97438 * 9 8 7 11 11 C 1.38771 * 120.50514 * 359.97438 * 10 9 8 12 12 C 1.37742 * 120.79657 * 0.03277 * 11 10 9 13 13 C 1.39772 * 119.69685 * 359.96843 * 12 11 10 14 14 N 1.35544 * 121.26842 * 180.02562 * 13 12 11 15 15 C 1.30538 * 122.19734 * 179.97438 * 14 13 12 16 16 S 1.76204 * 118.44232 * 180.02562 * 15 14 13 17 17 C 1.76203 * 99.99803 * 0.02562 * 16 15 14 18 18 H 1.07991 * 120.00453 * 359.72217 * 17 16 15 19 19 C 1.38825 * 119.99569 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00025 * 359.71766 * 19 17 16 21 21 Si 1.86798 * 119.99654 * 179.72429 * 19 17 16 22 22 H 1.48498 * 109.47416 * 59.99581 * 21 19 17 23 23 H 1.48508 * 109.46609 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99166 * 21 19 17 25 25 N 1.38022 * 123.11206 * 0.27805 * 15 14 13 26 26 C 1.35256 * 129.99490 * 180.25682 * 25 15 14 27 27 O 1.21225 * 127.25484 * 359.38269 * 26 25 15 28 28 H 1.08997 * 109.46581 * 60.00069 * 1 2 3 29 29 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46827 * 300.00179 * 1 2 3 31 31 H 1.09000 * 109.47268 * 239.99268 * 2 1 3 32 32 H 1.08998 * 109.47388 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47209 * 299.99970 * 3 2 1 34 34 H 1.09000 * 109.47677 * 59.99518 * 3 2 1 35 35 H 1.07997 * 120.23226 * 359.97194 * 9 8 7 36 36 H 1.07999 * 119.74773 * 180.02562 * 10 9 8 37 37 H 1.08004 * 119.60197 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.14866 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7030 -1.7578 1.2553 6 7 1.5917 -0.0267 2.4643 7 6 2.6514 0.3652 3.1142 8 6 2.7752 1.1042 4.3897 9 6 1.6546 1.5028 5.1101 10 6 1.8171 2.1899 6.2957 11 6 3.0873 2.4836 6.7713 12 6 4.2091 2.0971 6.0716 13 6 4.0687 1.4001 4.8682 14 7 5.1506 1.0042 4.1542 15 6 5.0406 0.3521 3.0287 16 16 6.5135 -0.1153 2.1821 17 6 7.7214 0.5395 3.2854 18 1 7.4107 1.0572 4.1807 19 6 9.0724 0.3952 3.0004 20 7 9.4507 -0.2349 1.9098 21 14 10.3527 1.0961 4.1660 22 1 10.1995 0.4703 5.5040 23 1 11.7113 0.8100 3.6389 24 1 10.1654 2.5647 4.2820 25 7 3.8251 0.0157 2.4680 26 6 3.5504 -0.6535 1.3251 27 8 4.3460 -1.1011 0.5275 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6641 1.2763 4.7443 36 1 0.9492 2.5008 6.8582 37 1 3.1976 3.0225 7.7007 38 1 5.1926 2.3316 6.4512 39 1 10.3947 -0.3360 1.7109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002965415.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:57 Heat of formation + Delta-G solvation = 28.468815 kcal Electronic energy + Delta-G solvation = -25552.968677 eV Core-core repulsion = 21972.436750 eV Total energy + Delta-G solvation = -3580.531927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59025 -40.61554 -38.76722 -37.98946 -36.06605 -34.86939 -33.52308 -32.35452 -30.72447 -28.78072 -28.21292 -27.84649 -25.75274 -25.08966 -23.41783 -22.46598 -21.14691 -20.66358 -19.81242 -19.12312 -18.09598 -17.92098 -17.10157 -17.03538 -16.45007 -16.19941 -15.91387 -15.55972 -15.32888 -15.14068 -14.94788 -14.60219 -14.36069 -13.74552 -13.57967 -13.42357 -13.38821 -13.17723 -13.05345 -12.94718 -12.81372 -12.69653 -12.40693 -12.34196 -12.07109 -12.03581 -11.81643 -11.34785 -11.26788 -10.90221 -10.81137 -10.57259 -9.90050 -9.64215 -8.60268 -8.57656 -6.43392 -0.74811 -0.16272 0.49146 0.62635 1.08601 1.30899 1.34126 1.41132 1.49380 1.81188 2.06491 2.52095 2.77480 2.82287 2.92026 3.02652 3.43503 3.59248 3.63349 3.79114 3.88248 4.01178 4.18230 4.26893 4.42539 4.48297 4.51663 4.57530 4.69696 4.74522 4.83245 4.93969 4.96248 5.07917 5.12617 5.20689 5.33168 5.41942 5.44395 5.48576 5.53714 5.91049 6.04697 6.20481 6.26320 6.84637 6.90238 8.48030 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.005306 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.356802 B = 5275.351020 C = 7467.063472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.151 4.151 4 C 0.033 3.967 5 H 0.161 0.839 6 N -0.484 5.484 7 C 0.379 3.621 8 C -0.148 4.148 9 C -0.041 4.041 10 C -0.137 4.137 11 C -0.060 4.060 12 C -0.132 4.132 13 C 0.131 3.869 14 N -0.544 5.544 15 C 0.320 3.680 16 S 0.147 5.853 17 C -0.565 4.565 18 H 0.109 0.891 19 C 0.030 3.970 20 N -0.903 5.903 21 Si 1.004 2.996 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.262 1.262 25 N -0.541 5.541 26 C 0.487 3.513 27 O -0.476 6.476 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.016 0.984 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.153 0.847 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.131 0.869 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 4.267 4.848 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 C -0.209 4.209 4 C -0.081 4.081 5 H 0.178 0.822 6 N -0.208 5.208 7 C 0.107 3.893 8 C -0.156 4.156 9 C -0.062 4.062 10 C -0.156 4.156 11 C -0.079 4.079 12 C -0.154 4.154 13 C 0.016 3.984 14 N -0.271 5.271 15 C -0.048 4.048 16 S 0.391 5.609 17 C -0.713 4.713 18 H 0.127 0.873 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.824 3.176 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.186 1.186 25 N -0.268 5.268 26 C 0.274 3.726 27 O -0.344 6.344 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.171 0.829 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.149 0.851 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.827 3.421 3.351 18.459 hybrid contribution 1.482 0.338 0.794 1.715 sum -16.345 3.759 4.144 17.277 Atomic orbital electron populations 1.21664 0.90572 1.03255 1.02988 1.21068 0.99189 0.94958 0.92995 1.21901 0.98654 0.96943 1.03362 1.23177 0.85869 1.03717 0.95336 0.82188 1.75277 1.20968 1.18697 1.05888 1.22542 0.81554 0.92378 0.92777 1.18840 0.95911 1.07233 0.93644 1.21220 0.97030 0.94140 0.93790 1.21561 0.98613 0.99603 0.95857 1.21623 0.91069 0.95706 0.99503 1.21018 1.01048 1.00282 0.93036 1.19202 0.87282 0.96323 0.95551 1.69007 1.30542 1.20785 1.06722 1.25950 0.91051 0.94115 0.93669 1.84429 0.89120 1.61759 1.25574 1.23789 0.92142 1.43219 1.12194 0.87333 1.26208 0.99938 0.94051 0.97507 1.70018 1.18936 1.39164 1.25578 0.84919 0.75658 0.79117 0.77872 1.18583 1.19428 1.18602 1.45996 1.07424 1.50156 1.23232 1.22769 0.94942 0.75921 0.78942 1.90775 1.57190 1.44714 1.41726 0.90630 0.91071 0.91947 0.88693 0.96526 0.89284 0.92869 0.82925 0.81038 0.81390 0.85088 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.06 71.98 0.65 -1.53 16 2 C -0.06 -1.49 2.89 -10.79 -0.03 -1.52 16 3 C -0.15 -4.06 8.67 71.98 0.62 -3.44 16 4 C 0.03 0.95 3.44 44.38 0.15 1.11 16 5 H 0.16 3.86 8.14 -2.39 -0.02 3.84 16 6 N -0.48 -14.56 10.11 -319.54 -3.23 -17.79 16 7 C 0.38 13.56 7.62 136.20 1.04 14.60 16 8 C -0.15 -5.00 5.90 -19.82 -0.12 -5.12 16 9 C -0.04 -0.99 9.84 22.41 0.22 -0.77 16 10 C -0.14 -2.47 10.03 22.34 0.22 -2.25 16 11 C -0.06 -1.21 10.00 22.28 0.22 -0.98 16 12 C -0.13 -4.01 10.03 22.52 0.23 -3.78 16 13 C 0.13 5.05 6.62 39.63 0.26 5.31 16 14 N -0.54 -25.68 8.25 -187.39 -1.55 -27.22 16 15 C 0.32 15.58 7.90 179.28 1.42 17.00 16 16 S 0.15 8.09 19.89 -56.49 -1.12 6.97 16 17 C -0.57 -32.15 9.23 67.96 0.63 -31.53 16 18 H 0.11 6.15 6.48 -2.92 -0.02 6.13 16 19 C 0.03 1.63 5.49 84.88 0.47 2.10 16 20 N -0.90 -51.82 13.22 21.65 0.29 -51.53 16 21 Si 1.00 42.64 29.55 68.60 2.03 44.66 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 N -0.54 -22.84 2.93 -460.08 -1.35 -24.19 16 26 C 0.49 19.22 6.32 87.80 0.56 19.78 16 27 O -0.48 -21.50 16.34 -2.86 -0.05 -21.54 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.18 7.70 -2.39 -0.02 1.16 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.02 0.54 7.17 -2.39 -0.02 0.52 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.50 7.62 -2.39 -0.02 1.48 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.59 344.87 2.64 -67.95 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.09 Total: 13.73 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.54 Total: 8.97 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.84 Total: -120.74 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 8.09 SS G_CDS: -1.12 Total: 6.97 kcal Total: -70.59 2.64 -67.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002965415.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.416 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds