Wall clock time and date at job start Tue Mar 31 2020 05:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 C 1.52998 * 109.46859 * 119.99985 * 2 1 3 5 5 H 1.09001 * 110.46797 * 298.81853 * 4 2 1 6 6 N 1.46945 * 110.52288 * 61.45276 * 4 2 1 7 7 C 1.30354 * 107.84140 * 118.62581 * 6 4 2 8 8 C 1.47918 * 130.41507 * 180.28822 * 7 6 4 9 9 C 1.39075 * 121.50526 * 359.40777 * 8 7 6 10 10 C 1.37980 * 119.53969 * 180.28548 * 9 8 7 11 11 C 1.38773 * 120.51059 * 0.29125 * 10 9 8 12 12 C 1.37736 * 120.79099 * 359.97438 * 11 10 9 13 13 C 1.39776 * 119.70062 * 0.02562 * 12 11 10 14 14 N 1.35547 * 121.26552 * 180.02562 * 13 12 11 15 15 C 1.30530 * 122.19771 * 179.97438 * 14 13 12 16 16 S 1.76198 * 118.44306 * 179.97438 * 15 14 13 17 17 C 1.76200 * 100.00430 * 0.02562 * 16 15 14 18 18 H 1.08006 * 119.99429 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00189 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00214 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99650 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47238 * 90.00281 * 21 19 17 23 23 H 1.48500 * 109.47038 * 209.99784 * 21 19 17 24 24 H 1.48497 * 109.47353 * 330.00188 * 21 19 17 25 25 N 1.38025 * 123.10881 * 0.02562 * 15 14 13 26 26 C 1.35255 * 129.98526 * 179.97438 * 25 15 14 27 27 O 1.21223 * 127.25720 * 0.07562 * 26 25 15 28 28 H 1.08996 * 109.47268 * 300.00461 * 1 2 3 29 29 H 1.09005 * 109.46972 * 60.00202 * 1 2 3 30 30 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46751 * 240.00086 * 2 1 3 32 32 H 1.09005 * 109.47058 * 299.99745 * 3 2 1 33 33 H 1.08997 * 109.46760 * 60.00277 * 3 2 1 34 34 H 1.09002 * 109.46428 * 179.97438 * 3 2 1 35 35 H 1.08000 * 120.22539 * 0.57552 * 9 8 7 36 36 H 1.07995 * 119.74578 * 180.26681 * 10 9 8 37 37 H 1.08003 * 119.60386 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.15358 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.7029 -0.2081 2.1499 6 7 1.5916 -2.1206 1.2553 7 6 2.6512 -2.8796 1.2379 8 6 2.7751 -4.3535 1.2291 9 6 1.6547 -5.1772 1.2518 10 6 1.8174 -6.5473 1.2486 11 6 3.0876 -7.1059 1.2289 12 6 4.2092 -6.3066 1.2118 13 6 4.0686 -4.9160 1.2147 14 7 5.1505 -4.0995 1.1977 15 6 5.0404 -2.7989 1.1996 16 16 6.5132 -1.8319 1.1771 17 6 7.7211 -3.1145 1.1575 18 1 7.4104 -4.1490 1.1622 19 6 9.0719 -2.7956 1.1360 20 7 9.4502 -1.5360 1.1297 21 14 10.3524 -4.1555 1.1159 22 1 10.6696 -4.5161 -0.2893 23 1 11.5855 -3.6844 1.7964 24 1 9.8203 -5.3470 1.8247 25 7 3.8249 -2.1452 1.2195 26 6 3.5503 -0.8208 1.2245 27 8 4.3459 0.0937 1.2109 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 0.6641 -4.7472 1.2672 36 1 0.9496 -7.1900 1.2618 37 1 3.1979 -8.1803 1.2262 38 1 5.1928 -6.7524 1.1961 39 1 10.3941 -1.3131 1.1151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002965416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:02 Heat of formation + Delta-G solvation = 43.317622 kcal Electronic energy + Delta-G solvation = -25340.692067 eV Core-core repulsion = 21760.804033 eV Total energy + Delta-G solvation = -3579.888034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09231 -39.24143 -37.28358 -36.61750 -34.92048 -33.00068 -32.14967 -31.14329 -29.35073 -27.50367 -27.00573 -25.93975 -24.27217 -23.61882 -22.00608 -21.08657 -20.32377 -19.08274 -18.41799 -17.56425 -16.58482 -16.27342 -15.65261 -15.59005 -15.18252 -14.73257 -14.56159 -14.15524 -14.03982 -13.54981 -13.43522 -13.24125 -12.99128 -12.64479 -12.23936 -12.15206 -12.02489 -11.77508 -11.64700 -11.51323 -11.29445 -11.26812 -11.14744 -11.12747 -10.87633 -10.76794 -10.34533 -9.67257 -9.64315 -9.50399 -9.15255 -8.87034 -8.62095 -8.06559 -6.93926 -6.74400 -4.46631 0.67518 1.14066 1.98884 2.15943 2.51119 2.85357 3.04604 3.09174 3.16508 3.18545 3.79326 3.87098 4.12433 4.36394 4.61616 4.71656 4.73987 4.80196 5.05671 5.06584 5.13472 5.19942 5.25155 5.29793 5.56261 5.57492 5.62913 5.75969 5.83308 5.83676 5.93418 6.01705 6.17902 6.24499 6.27997 6.34948 6.42874 6.61036 6.69721 6.75302 7.11067 7.32487 7.44531 7.75508 8.19061 8.49361 8.77207 10.31201 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.005337 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.159972 B = 5244.957913 C = 7791.657070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.158 4.158 4 C 0.030 3.970 5 H 0.134 0.866 6 N -0.517 5.517 7 C 0.400 3.600 8 C -0.148 4.148 9 C -0.035 4.035 10 C -0.173 4.173 11 C -0.071 4.071 12 C -0.130 4.130 13 C 0.193 3.807 14 N -0.536 5.536 15 C 0.308 3.692 16 S 0.242 5.758 17 C -0.549 4.549 18 H 0.120 0.880 19 C 0.078 3.922 20 N -0.861 5.861 21 Si 0.937 3.063 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.262 1.262 25 N -0.534 5.534 26 C 0.494 3.506 27 O -0.440 6.440 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 -2.760 -0.794 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.215 4.215 4 C -0.085 4.085 5 H 0.151 0.849 6 N -0.241 5.241 7 C 0.129 3.871 8 C -0.158 4.158 9 C -0.056 4.056 10 C -0.195 4.195 11 C -0.091 4.091 12 C -0.152 4.152 13 C 0.074 3.926 14 N -0.264 5.264 15 C -0.053 4.053 16 S 0.491 5.509 17 C -0.698 4.698 18 H 0.138 0.862 19 C -0.134 4.134 20 N -0.493 5.493 21 Si 0.762 3.238 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.187 1.187 25 N -0.261 5.261 26 C 0.279 3.721 27 O -0.307 6.307 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.192 -0.935 -0.798 13.250 hybrid contribution 0.672 -1.491 0.074 1.637 sum -12.521 -2.426 -0.724 12.774 Atomic orbital electron populations 1.21713 0.93316 1.02819 1.01454 1.20891 0.97207 0.95931 0.94495 1.21986 1.03103 0.94447 1.02005 1.22846 0.89132 0.93811 1.02673 0.84868 1.75335 1.22171 0.99362 1.27280 1.22259 0.81909 0.92651 0.90320 1.18574 0.95455 0.86587 1.15175 1.20852 0.97298 0.92993 0.94441 1.20900 0.97212 0.94318 1.07025 1.21111 0.92185 0.99571 0.96202 1.20735 0.99401 0.90481 1.04599 1.18792 0.87198 0.94203 0.92434 1.69103 1.27845 0.99432 1.30051 1.26493 0.90981 0.93181 0.94676 1.84397 0.86936 1.06000 1.73613 1.23882 0.91494 0.97063 1.57335 0.86195 1.25283 0.98299 0.97175 0.92637 1.69912 1.18608 1.17234 1.43550 0.85841 0.78581 0.80399 0.79016 1.19597 1.20421 1.18654 1.45849 1.07728 1.09106 1.63381 1.21937 0.93295 0.81054 0.75794 1.90774 1.55956 1.40554 1.43415 0.92588 0.92611 0.91364 0.90998 0.92084 0.92268 0.90796 0.85231 0.85963 0.85829 0.84884 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.06 37.16 0.34 -1.11 16 2 C -0.07 -0.86 2.70 -90.62 -0.24 -1.10 16 3 C -0.16 -1.90 8.95 37.16 0.33 -1.57 16 4 C 0.03 0.45 3.18 -68.51 -0.22 0.23 16 5 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 6 N -0.52 -8.42 10.86 -52.36 -0.57 -8.99 16 7 C 0.40 7.36 7.71 -153.63 -1.18 6.18 16 8 C -0.15 -2.64 5.91 -104.55 -0.62 -3.26 16 9 C -0.04 -0.50 9.84 -39.37 -0.39 -0.89 16 10 C -0.17 -2.14 10.03 -39.48 -0.40 -2.53 16 11 C -0.07 -0.90 10.00 -39.57 -0.40 -1.30 16 12 C -0.13 -2.10 10.03 -39.19 -0.39 -2.49 16 13 C 0.19 3.74 6.62 -84.58 -0.56 3.18 16 14 N -0.54 -12.08 8.25 -10.58 -0.09 -12.17 16 15 C 0.31 7.04 7.90 -87.56 -0.69 6.35 16 16 S 0.24 6.05 19.89 -107.50 -2.14 3.91 16 17 C -0.55 -14.47 9.23 30.94 0.29 -14.18 16 18 H 0.12 3.16 6.48 -52.48 -0.34 2.82 16 19 C 0.08 2.00 5.49 -17.48 -0.10 1.91 16 20 N -0.86 -23.02 13.22 55.49 0.73 -22.29 16 21 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 N -0.53 -10.89 2.93 -59.44 -0.17 -11.06 16 26 C 0.49 9.34 7.46 -10.43 -0.08 9.26 16 27 O -0.44 -9.07 14.36 5.61 0.08 -8.99 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.07 6.07 -51.93 -0.32 0.76 16 35 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 39 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -28.35 344.10 -10.72 -39.07 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.42 Total: 1.82 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -4.31 Total: -1.31 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.10 Total: -54.51 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -2.14 Total: 3.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.35 -10.72 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002965416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.386 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds