Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36485 * 127.11885 * 2 1 4 4 C 1.50697 * 126.31764 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47294 * 269.71264 * 4 3 2 6 6 C 1.50696 * 109.47078 * 179.97438 * 5 4 3 7 7 N 1.30110 * 124.95390 * 305.02671 * 6 5 4 8 8 C 1.35787 * 109.64483 * 179.97438 * 7 6 5 9 9 C 1.39735 * 133.60090 * 179.97438 * 8 7 6 10 10 C 1.36603 * 119.88474 * 179.72469 * 9 8 7 11 11 C 1.38783 * 120.66827 * 0.28758 * 10 9 8 12 12 C 1.37847 * 120.45027 * 359.96769 * 11 10 9 13 13 C 1.38834 * 119.69200 * 0.03175 * 12 11 10 14 14 N 1.36051 * 124.94814 * 125.56520 * 6 5 4 15 15 H 0.97004 * 126.34652 * 359.46513 * 14 6 5 16 16 N 1.30493 * 107.36695 * 179.72207 * 3 2 1 17 17 N 1.28540 * 110.06047 * 0.24440 * 16 3 2 18 18 C 1.31395 * 109.79268 * 359.97438 * 17 16 3 19 19 S 1.76206 * 126.48880 * 180.02562 * 18 17 16 20 20 C 1.76207 * 99.99829 * 359.97177 * 19 18 17 21 21 H 1.07998 * 119.99790 * 0.02562 * 20 19 18 22 22 C 1.38667 * 119.99899 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99936 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00024 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47018 * 59.99867 * 24 22 20 26 26 H 1.48500 * 109.47242 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.46782 * 300.00002 * 24 22 20 28 28 H 1.09000 * 109.47091 * 89.99752 * 1 2 3 29 29 H 1.09004 * 109.47331 * 210.00163 * 1 2 3 30 30 H 1.09000 * 109.47621 * 329.99807 * 1 2 3 31 31 H 1.08998 * 109.47270 * 149.71201 * 4 3 2 32 32 H 1.08999 * 109.47100 * 29.71392 * 4 3 2 33 33 H 1.08998 * 109.47013 * 59.99780 * 5 4 3 34 34 H 1.08999 * 109.47152 * 300.00097 * 5 4 3 35 35 H 1.08002 * 120.06112 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.67091 * 180.25918 * 10 9 8 37 37 H 1.08003 * 119.77014 * 180.02562 * 11 10 9 38 38 H 1.08002 * 120.15251 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99973 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2886 1.0883 0.0000 4 6 1.8590 2.5327 -0.0005 5 6 1.7210 3.0233 -1.4432 6 6 1.2908 4.4675 -1.4437 7 7 0.2379 4.9319 -0.8366 8 6 0.1468 6.2712 -1.0407 9 6 -0.7635 7.2488 -0.6303 10 6 -0.5788 8.5500 -1.0029 11 6 0.5032 8.9136 -1.7923 12 6 1.4108 7.9653 -2.2132 13 6 1.2394 6.6379 -1.8444 14 7 1.9411 5.4742 -2.0876 15 1 2.7531 5.3913 -2.6119 16 7 3.5167 0.6473 0.0060 17 7 3.5237 -0.6381 0.0047 18 6 2.2898 -1.0897 -0.0018 19 16 1.7927 -2.7801 -0.0054 20 6 3.3712 -3.5632 0.0011 21 1 4.2705 -2.9653 0.0061 22 6 3.4586 -4.9471 -0.0001 23 7 2.3623 -5.6758 -0.0057 24 14 5.1320 -5.7773 0.0075 25 1 5.8802 -5.3717 1.2244 26 1 4.9532 -7.2515 0.0054 27 1 5.8927 -5.3687 -1.2005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 2.6058 3.1341 0.5178 32 1 0.8997 2.6267 0.5085 33 1 0.9743 2.4219 -1.9616 34 1 2.6803 2.9294 -1.9522 35 1 -1.6088 6.9770 -0.0156 36 1 -1.2821 9.3035 -0.6803 37 1 0.6354 9.9467 -2.0780 38 1 2.2509 8.2535 -2.8277 39 1 2.4235 -6.6439 -0.0070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004131152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = 133.323791 kcal Electronic energy + Delta-G solvation = -23544.358721 eV Core-core repulsion = 20000.666398 eV Total energy + Delta-G solvation = -3543.692323 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43290 -42.03051 -37.75941 -34.83696 -33.98184 -33.38862 -32.64128 -30.37078 -30.15109 -28.39959 -27.10268 -25.75899 -24.87677 -22.68032 -22.31493 -21.89276 -20.98735 -20.13359 -18.13951 -18.00889 -17.52624 -16.46035 -15.93689 -15.75908 -15.43925 -15.28567 -14.92039 -14.63499 -14.30548 -14.26634 -13.97401 -13.28327 -13.09595 -12.92452 -12.75227 -12.32376 -12.22826 -11.93217 -11.84350 -11.43023 -11.37568 -11.11417 -11.07432 -10.95956 -10.62728 -10.23409 -10.19786 -9.78694 -9.69598 -9.46133 -8.85387 -8.83284 -8.66709 -8.40272 -6.76794 -6.45902 -4.19989 0.64891 1.22084 2.27152 2.47979 2.52700 2.60980 3.23057 3.23528 3.29004 3.38954 3.56452 3.60243 3.80168 4.02324 4.24050 4.60354 4.71878 4.73237 4.84059 4.93710 4.95806 4.97939 5.06886 5.10302 5.14417 5.18943 5.34608 5.37508 5.42742 5.52120 5.65014 5.75949 5.87436 6.09106 6.18279 6.20960 6.22812 6.45508 6.57405 6.75593 7.01387 7.39147 7.58211 7.61367 8.38047 9.06124 9.47816 10.62404 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.038281 B = 0.002046 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.249519 B =13678.994107 C =14184.084227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.477 5.477 3 C 0.134 3.866 4 C -0.008 4.008 5 C -0.038 4.038 6 C 0.297 3.703 7 N -0.489 5.489 8 C 0.049 3.951 9 C -0.065 4.065 10 C -0.130 4.130 11 C -0.105 4.105 12 C -0.111 4.111 13 C 0.044 3.956 14 N -0.597 5.597 15 H 0.424 0.576 16 N -0.289 5.289 17 N -0.309 5.309 18 C 0.170 3.830 19 S 0.131 5.869 20 C -0.531 4.531 21 H 0.104 0.896 22 C 0.075 3.925 23 N -0.879 5.879 24 Si 0.933 3.067 25 H -0.270 1.270 26 H -0.283 1.283 27 H -0.270 1.270 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 24.920 -4.309 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.175 5.175 3 C -0.136 4.136 4 C -0.049 4.049 5 C -0.078 4.078 6 C 0.030 3.970 7 N -0.210 5.210 8 C -0.069 4.069 9 C -0.084 4.084 10 C -0.150 4.150 11 C -0.125 4.125 12 C -0.132 4.132 13 C -0.066 4.066 14 N -0.208 5.208 15 H 0.263 0.737 16 N -0.130 5.130 17 N -0.154 5.154 18 C -0.201 4.201 19 S 0.363 5.637 20 C -0.680 4.680 21 H 0.122 0.878 22 C -0.134 4.134 23 N -0.514 5.514 24 Si 0.758 3.242 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.195 1.195 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.483 23.734 -3.797 25.174 hybrid contribution 1.680 0.422 -0.780 1.900 sum -5.803 24.157 -4.576 25.262 Atomic orbital electron populations 1.21973 0.76172 1.04754 1.03646 1.46146 1.07962 1.05294 1.58055 1.24351 0.87742 0.91047 1.10474 1.19629 1.03252 0.86558 0.95429 1.20202 1.03187 0.85427 0.99001 1.23555 0.89348 0.92201 0.91924 1.70411 1.18225 1.08139 1.24196 1.19122 0.96265 0.91107 1.00440 1.20046 0.97915 0.90975 0.99492 1.20655 0.98773 0.95707 0.99869 1.20881 0.94432 0.98872 0.98310 1.19972 1.01183 0.89004 1.03021 1.18911 0.96060 0.88629 1.03002 1.43133 1.25875 1.06410 1.45391 0.73694 1.73886 1.17249 1.04852 1.16969 1.74746 1.16490 1.01158 1.22989 1.28374 0.89287 0.98611 1.03836 1.83399 1.13080 0.80286 1.86960 1.23139 0.92561 0.93637 1.58660 0.87814 1.25064 0.98821 0.95959 0.93563 1.69939 1.27732 1.06784 1.46952 0.85975 0.81414 0.77324 0.79483 1.19468 1.20821 1.19482 0.90547 0.88993 0.89537 0.88814 0.89035 0.88321 0.88877 0.85314 0.85390 0.85340 0.86000 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.91 59.84 0.65 1.65 16 2 N -0.48 -8.60 3.21 -120.87 -0.39 -8.99 16 3 C 0.13 2.32 7.32 -154.09 -1.13 1.19 16 4 C -0.01 -0.10 5.52 -27.88 -0.15 -0.25 16 5 C -0.04 -0.39 5.82 -27.88 -0.16 -0.55 16 6 C 0.30 3.18 7.37 -154.81 -1.14 2.04 16 7 N -0.49 -6.16 11.21 -8.23 -0.09 -6.25 16 8 C 0.05 0.58 7.23 -84.70 -0.61 -0.03 16 9 C -0.06 -0.62 10.05 -39.61 -0.40 -1.02 16 10 C -0.13 -0.97 9.96 -39.97 -0.40 -1.37 16 11 C -0.11 -0.74 10.03 -39.52 -0.40 -1.14 16 12 C -0.11 -0.89 10.07 -39.50 -0.40 -1.29 16 13 C 0.04 0.45 7.30 -83.99 -0.61 -0.16 16 14 N -0.60 -5.41 6.23 -8.00 -0.05 -5.46 16 15 H 0.42 2.56 8.96 -40.82 -0.37 2.20 16 16 N -0.29 -6.26 12.19 32.97 0.40 -5.86 16 17 N -0.31 -7.69 11.04 30.72 0.34 -7.35 16 18 C 0.17 3.90 8.06 -88.13 -0.71 3.19 16 19 S 0.13 3.24 21.39 -107.50 -2.30 0.94 16 20 C -0.53 -14.87 9.37 30.89 0.29 -14.58 16 21 H 0.10 3.01 6.93 -52.49 -0.36 2.64 16 22 C 0.08 2.04 5.49 -17.48 -0.10 1.95 16 23 N -0.88 -24.45 13.22 55.48 0.73 -23.72 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 30 H 0.09 0.86 7.23 -51.93 -0.38 0.49 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.03 7.25 -51.93 -0.38 0.65 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -35.01 355.22 -10.70 -45.71 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.41 Total: -0.32 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -5.27 Total: -10.37 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.94 Total: -57.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.30 Total: 0.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.01 -10.70 -45.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004131152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.029 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds