Wall clock time and date at job start Tue Mar 31 2020 04:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99579 * 2 1 4 4 H 1.48504 * 109.47014 * 269.99759 * 3 2 1 5 5 H 1.48503 * 109.47465 * 29.99922 * 3 2 1 6 6 H 1.48502 * 109.46994 * 150.00156 * 3 2 1 7 7 C 1.37872 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.46507 * 120.00029 * 278.11845 * 10 9 7 12 12 C 1.50699 * 109.46865 * 270.00144 * 11 10 9 13 13 C 1.38241 * 120.00208 * 269.72428 * 12 11 10 14 14 C 1.38227 * 119.99834 * 179.76911 * 13 12 11 15 15 C 1.38225 * 120.00425 * 0.50625 * 14 13 12 16 16 C 1.38237 * 120.00014 * 359.75169 * 15 14 13 17 17 C 1.38236 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.34773 * 120.00105 * 98.11891 * 10 9 7 19 19 O 1.21557 * 120.00230 * 186.12626 * 18 10 9 20 20 C 1.47787 * 120.00099 * 6.13169 * 18 10 9 21 21 C 1.39621 * 120.12505 * 330.29428 * 20 18 10 22 22 C 1.37892 * 119.86380 * 180.21183 * 21 20 18 23 23 C 1.38514 * 120.13050 * 359.51120 * 22 21 20 24 24 Cl 1.73597 * 119.86970 * 180.27553 * 23 22 21 25 25 C 1.38516 * 120.26561 * 0.25868 * 23 22 21 26 26 C 1.37891 * 120.13383 * 359.97438 * 25 23 22 27 27 H 0.96997 * 119.99736 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47139 * 59.99816 * 9 7 2 29 29 H 1.08997 * 109.46814 * 299.99681 * 9 7 2 30 30 H 1.08995 * 109.47237 * 29.99759 * 11 10 9 31 31 H 1.08996 * 109.47160 * 150.00548 * 11 10 9 32 32 H 1.08001 * 119.99558 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.99743 * 180.23493 * 14 13 12 34 34 H 1.08008 * 120.00663 * 179.72737 * 15 14 13 35 35 H 1.08000 * 120.00389 * 179.97438 * 16 15 14 36 36 H 1.07994 * 120.00212 * 179.97438 * 17 16 15 37 37 H 1.07996 * 120.06804 * 0.02562 * 21 20 18 38 38 H 1.08004 * 119.93707 * 179.79213 * 22 21 20 39 39 H 1.08001 * 119.93225 * 179.97438 * 25 23 22 40 40 H 1.07997 * 120.07081 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.8155 -4.0529 -1.2555 12 6 1.9563 -5.1179 -1.8868 13 6 2.1754 -6.4498 -1.5882 14 6 1.3842 -7.4263 -2.1636 15 6 0.3807 -7.0719 -3.0456 16 6 0.1650 -5.7405 -3.3484 17 6 0.9525 -4.7634 -2.7687 18 6 2.5159 -4.2319 1.1560 19 8 3.3867 -5.0798 1.1749 20 6 1.8000 -3.8802 2.4001 21 6 1.2944 -2.5908 2.5772 22 6 0.6311 -2.2673 3.7420 23 6 0.4571 -3.2213 4.7310 24 17 -0.3852 -2.8087 6.1917 25 6 0.9523 -4.5035 4.5590 26 6 1.6215 -4.8375 3.4006 27 1 -0.4849 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 2.9008 -3.2049 -1.9350 31 1 3.8070 -4.4582 -1.0539 32 1 2.9621 -6.7269 -0.9021 33 1 1.5530 -8.4666 -1.9273 34 1 -0.2347 -7.8352 -3.4986 35 1 -0.6188 -5.4635 -4.0379 36 1 0.7843 -3.7233 -3.0055 37 1 1.4252 -1.8475 1.8047 38 1 0.2425 -1.2693 3.8816 39 1 0.8139 -5.2430 5.3338 40 1 2.0067 -5.8376 3.2674 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004325328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:02 Heat of formation + Delta-G solvation = 28.049611 kcal Electronic energy + Delta-G solvation = -25260.387980 eV Core-core repulsion = 21645.501417 eV Total energy + Delta-G solvation = -3614.886563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.092 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.06136 -38.89133 -37.78703 -36.17039 -35.41068 -33.08966 -31.74910 -30.64990 -30.61167 -30.13737 -27.66942 -25.93030 -23.52326 -22.62831 -22.42802 -22.05997 -21.02953 -19.07981 -16.98315 -16.78118 -16.54014 -16.25581 -15.74738 -15.04292 -14.75702 -14.72195 -14.52236 -14.25298 -13.90896 -13.40060 -13.17888 -13.14628 -13.09428 -12.64310 -12.47038 -12.25814 -12.03846 -11.51895 -11.40182 -11.19811 -11.14773 -11.08666 -10.94693 -10.81085 -10.63914 -10.37010 -9.96599 -9.84962 -9.28147 -8.85083 -8.64908 -8.58822 -8.48282 -8.26319 -7.86363 -6.38446 -4.49289 1.16635 1.56750 1.67569 1.68964 2.31213 3.12772 3.21475 3.23741 3.31650 3.70843 4.13308 4.18698 4.26574 4.91400 5.08755 5.13319 5.17059 5.20263 5.22162 5.27281 5.42470 5.67405 5.69692 5.77752 5.79186 5.94720 6.05027 6.16940 6.30530 6.32977 6.36875 6.47137 6.57054 6.71406 6.72438 6.74046 6.85048 6.97032 7.06893 7.23102 7.27165 7.37439 7.56822 7.81293 8.17994 8.60159 8.84503 9.19779 10.65526 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.008244 B = 0.005125 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.608188 B = 5461.917905 C = 7808.079279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.581 5.581 11 C 0.156 3.844 12 C -0.095 4.095 13 C -0.101 4.101 14 C -0.129 4.129 15 C -0.125 4.125 16 C -0.127 4.127 17 C -0.100 4.100 18 C 0.560 3.440 19 O -0.566 6.566 20 C -0.130 4.130 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.017 4.017 24 Cl -0.084 7.084 25 C -0.138 4.138 26 C -0.059 4.059 27 H 0.270 0.730 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.212 0.788 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -8.081 1.061 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.088 3.912 10 N -0.309 5.309 11 C 0.033 3.967 12 C -0.096 4.096 13 C -0.119 4.119 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.118 4.118 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.133 4.133 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.043 4.043 24 Cl -0.056 7.056 25 C -0.157 4.157 26 C -0.078 4.078 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.227 0.773 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.639 -8.324 1.177 8.431 hybrid contribution 0.065 1.014 0.144 1.026 sum -0.574 -7.310 1.321 7.451 Atomic orbital electron populations 1.69932 1.05963 1.27911 1.47627 1.24999 0.94919 0.99470 0.94124 0.86503 0.80064 0.82565 0.78591 1.20266 1.20792 1.19447 1.21465 0.94124 0.90170 1.52930 0.91449 1.20340 0.88221 0.82430 1.00203 1.48054 1.44380 1.33527 1.04974 1.20247 0.95215 0.95484 0.85773 1.20401 0.97500 0.94825 0.96920 1.21212 0.99510 0.92459 0.98737 1.21090 0.96469 0.99093 0.98071 1.21083 0.98318 0.96175 0.98789 1.21109 0.99755 0.93063 1.00542 1.21201 0.94643 0.99750 0.96237 1.18204 0.82448 0.80891 0.83581 1.90658 1.32742 1.34921 1.86453 1.20087 1.02223 0.95345 0.95613 1.23590 0.90653 0.98099 0.97582 1.21159 1.01135 0.99298 0.92710 1.21242 0.98918 0.95475 0.88689 1.98341 1.76814 1.93909 1.36495 1.20799 1.01248 0.94933 0.98732 1.21078 0.95790 0.99368 0.91530 0.92026 0.94600 0.91603 0.89102 0.89804 0.85704 0.86570 0.86663 0.86379 0.85643 0.77261 0.84732 0.85172 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.93 13.29 55.43 0.74 -21.19 16 2 C 0.07 1.69 5.33 -17.82 -0.09 1.59 16 3 Si 0.90 19.03 29.54 -169.99 -5.02 14.01 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -12.95 7.47 -34.44 -0.26 -13.21 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.21 4.57 4.64 -5.19 -0.02 4.55 16 10 N -0.58 -11.78 2.45 -177.57 -0.43 -12.21 16 11 C 0.16 2.80 5.59 -5.19 -0.03 2.77 16 12 C -0.10 -1.59 5.46 -104.62 -0.57 -2.16 16 13 C -0.10 -1.59 9.70 -39.58 -0.38 -1.98 16 14 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 15 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 16 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 17 C -0.10 -1.57 9.70 -39.58 -0.38 -1.96 16 18 C 0.56 11.61 7.46 -12.36 -0.09 11.52 16 19 O -0.57 -12.34 16.11 5.32 0.09 -12.26 16 20 C -0.13 -2.51 5.58 -104.96 -0.59 -3.10 16 21 C -0.08 -1.62 7.48 -39.19 -0.29 -1.91 16 22 C -0.12 -2.19 9.81 -39.61 -0.39 -2.58 16 23 C -0.02 -0.26 6.33 -39.38 -0.25 -0.51 16 24 Cl -0.08 -1.18 28.95 -51.86 -1.50 -2.68 16 25 C -0.14 -2.09 9.81 -39.61 -0.39 -2.48 16 26 C -0.06 -0.98 9.60 -39.19 -0.38 -1.36 16 27 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.04 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.07 1.51 4.08 -51.96 -0.21 1.30 16 30 H 0.09 1.59 8.02 -51.93 -0.42 1.17 16 31 H 0.08 1.50 7.29 -51.93 -0.38 1.12 16 32 H 0.12 2.03 7.91 -52.49 -0.42 1.61 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.21 4.61 3.00 -52.49 -0.16 4.45 16 38 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.07 7.92 -52.49 -0.42 1.65 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -25.75 356.56 -10.57 -36.32 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.50 Total: 9.80 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -5.31 Total: -17.16 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.30 Total: -33.41 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -25.75 -10.57 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.370 kcal (2) G-P(sol) polarization free energy of solvation -25.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds