Wall clock time and date at job start Tue Mar 31 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36825 * 125.03388 * 2 1 4 4 H 0.96993 * 125.06627 * 359.97438 * 3 2 1 5 5 C 1.37694 * 109.87095 * 179.82401 * 3 2 1 6 6 C 1.39129 * 133.50710 * 180.14130 * 5 3 2 7 7 C 1.37742 * 119.78154 * 180.31178 * 6 5 3 8 8 C 1.38831 * 120.66567 * 0.02572 * 7 6 5 9 9 C 1.36633 * 120.52739 * 359.94922 * 8 7 6 10 10 C 1.39627 * 119.76191 * 0.04941 * 9 8 7 11 11 C 1.34233 * 125.03318 * 180.30217 * 2 1 3 12 12 C 1.50702 * 126.50523 * 0.03960 * 11 2 1 13 13 C 1.50698 * 109.47561 * 89.97001 * 12 11 2 14 14 N 1.30078 * 126.20292 * 89.69111 * 13 12 11 15 15 N 1.28655 * 109.55654 * 179.82996 * 14 13 12 16 16 C 1.31139 * 109.31472 * 0.44081 * 15 14 13 17 17 S 1.76200 * 126.38280 * 179.75203 * 16 15 14 18 18 C 1.80996 * 100.00065 * 359.97438 * 17 16 15 19 19 C 1.50701 * 109.47223 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99847 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99689 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00631 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47149 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46556 * 120.00380 * 23 21 19 26 26 H 1.48499 * 109.47477 * 240.00309 * 23 21 19 27 27 O 1.34642 * 107.23546 * 359.73665 * 16 15 14 28 28 H 1.09002 * 109.47152 * 269.69684 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69785 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69765 * 1 2 3 31 31 H 1.08004 * 120.10549 * 0.29513 * 6 5 3 32 32 H 1.07994 * 119.66972 * 180.02562 * 7 6 5 33 33 H 1.07994 * 119.74241 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.11883 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47511 * 209.97891 * 12 11 2 36 36 H 1.09005 * 109.46931 * 329.96866 * 12 11 2 37 37 H 1.09004 * 109.47195 * 300.00157 * 18 17 16 38 38 H 1.09008 * 109.46909 * 59.99697 * 18 17 16 39 39 H 0.96993 * 120.00557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1203 0.0000 4 1 1.9623 2.0324 -0.0004 5 6 3.6215 0.7602 0.0040 6 6 4.8099 1.4836 0.0082 7 6 6.0159 0.8182 0.0051 8 6 6.0590 -0.5694 -0.0028 9 6 4.9042 -1.2996 -0.0065 10 6 3.6706 -0.6456 -0.0034 11 6 2.2776 -1.0991 -0.0058 12 6 1.8004 -2.5285 -0.0142 13 6 1.6414 -2.9968 -1.4377 14 7 2.5576 -3.5629 -2.1672 15 7 2.0763 -3.8342 -3.3291 16 6 0.8273 -3.4384 -3.3844 17 16 -0.2551 -3.5845 -4.7671 18 6 0.8540 -4.3870 -5.9511 19 6 0.1218 -4.6189 -7.2477 20 1 -0.9090 -4.3126 -7.3480 21 6 0.7683 -5.2211 -8.3062 22 7 2.0236 -5.5936 -8.1843 23 14 -0.1395 -5.5091 -9.9132 24 1 -1.5306 -5.0034 -9.7934 25 1 0.5558 -4.7892 -11.0103 26 1 -0.1652 -6.9632 -10.2136 27 8 0.5261 -2.8998 -2.1877 28 1 -0.3633 -0.0054 1.0277 29 1 -0.3633 -0.8873 -0.5185 30 1 -0.3633 0.8927 -0.5091 31 1 4.7868 2.5634 0.0136 32 1 6.9373 1.3815 0.0088 33 1 7.0128 -1.0758 -0.0047 34 1 4.9454 -2.3788 -0.0130 35 1 2.5293 -3.1580 0.4962 36 1 0.8411 -2.5943 0.4993 37 1 1.7181 -3.7473 -6.1307 38 1 1.1873 -5.3428 -5.5464 39 1 2.4782 -6.0176 -8.9288 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004568439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:24 Heat of formation + Delta-G solvation = 82.894078 kcal Electronic energy + Delta-G solvation = -24079.068657 eV Core-core repulsion = 20500.896786 eV Total energy + Delta-G solvation = -3578.171871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.55072 -41.53235 -37.28093 -35.63659 -34.28869 -33.27703 -31.41592 -31.17696 -29.70187 -28.73537 -27.89227 -26.29421 -23.63157 -23.20122 -22.45705 -22.12533 -21.51134 -19.48856 -18.08704 -17.80097 -16.88538 -16.62666 -16.36181 -15.84605 -15.28215 -15.24841 -14.82391 -14.46696 -14.19669 -13.95533 -13.44634 -13.30783 -13.20559 -13.08259 -12.62713 -12.50038 -12.48792 -12.24881 -11.89052 -11.59828 -11.52470 -11.39806 -11.02594 -10.99003 -10.94624 -10.75259 -10.42718 -9.83241 -9.76072 -9.69135 -9.36164 -8.69565 -8.29173 -7.81220 -7.09628 -6.27287 -4.36988 0.96834 1.35807 1.48604 1.55485 2.32372 2.80982 2.90945 3.12565 3.20751 3.27822 3.31473 3.44112 3.82889 4.26936 4.36736 4.53875 4.61430 4.74117 4.92232 5.01071 5.04602 5.09197 5.14313 5.22341 5.37994 5.40049 5.46226 5.54379 5.59324 5.69418 5.72816 5.81882 5.98702 6.03391 6.34892 6.52226 6.55746 6.63762 6.97739 7.01953 7.09481 7.30532 7.58869 7.82197 8.63789 8.74826 9.27386 10.82979 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.002664 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.518299 B =10506.317702 C =11179.439617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.101 3.899 3 N -0.591 5.591 4 H 0.414 0.586 5 C 0.095 3.905 6 C -0.133 4.133 7 C -0.100 4.100 8 C -0.146 4.146 9 C -0.063 4.063 10 C -0.089 4.089 11 C -0.180 4.180 12 C 0.063 3.937 13 C 0.143 3.857 14 N -0.272 5.272 15 N -0.292 5.292 16 C 0.150 3.850 17 S 0.005 5.995 18 C 0.067 3.933 19 C -0.529 4.529 20 H 0.070 0.930 21 C 0.073 3.927 22 N -0.879 5.879 23 Si 0.910 3.090 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.279 1.279 27 O -0.218 6.218 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 13.531 20.515 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.008 4.008 3 N -0.194 5.194 4 H 0.251 0.749 5 C -0.012 4.012 6 C -0.153 4.153 7 C -0.119 4.119 8 C -0.165 4.165 9 C -0.082 4.082 10 C -0.093 4.093 11 C -0.188 4.188 12 C 0.024 3.976 13 C -0.073 4.073 14 N -0.119 5.119 15 N -0.143 5.143 16 C -0.166 4.166 17 S 0.236 5.764 18 C -0.080 4.080 19 C -0.569 4.569 20 H 0.088 0.912 21 C -0.134 4.134 22 N -0.515 5.515 23 Si 0.737 3.263 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.205 1.205 27 O -0.100 6.100 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.707 13.369 19.917 23.998 hybrid contribution -0.209 0.502 -0.473 0.721 sum 0.498 13.871 19.444 23.890 Atomic orbital electron populations 1.20579 0.87410 1.04470 1.03322 1.20139 0.93366 0.85430 1.01819 1.41655 1.04098 1.08016 1.65660 0.74854 1.18196 0.84458 0.94084 1.04430 1.19981 0.89703 0.98832 1.06813 1.20800 0.96603 0.94510 0.99970 1.20658 0.98138 0.93895 1.03780 1.20367 0.90329 1.00083 0.97393 1.18974 0.92888 0.91792 1.05642 1.19544 0.91199 0.92801 1.15279 1.18191 1.03503 0.92060 0.83893 1.27764 0.80737 1.00948 0.97851 1.74063 1.25909 1.13483 0.98439 1.75036 1.05653 1.21269 1.12351 1.30615 0.98078 0.97194 0.90675 1.85897 1.16555 1.75226 0.98771 1.21546 0.95278 0.98719 0.92504 1.20560 0.98796 1.42427 0.95122 0.91192 1.24945 0.94952 0.94563 0.98892 1.69983 1.10141 1.38985 1.32413 0.86244 0.79791 0.78162 0.82134 1.19338 1.20547 1.20516 1.84925 1.39117 1.63856 1.22080 0.89997 0.89240 0.90983 0.86421 0.85843 0.85934 0.85584 0.86741 0.88200 0.92562 0.92489 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.98 36.01 0.36 -0.40 16 2 C 0.10 1.06 7.08 -81.77 -0.58 0.48 16 3 N -0.59 -5.77 6.07 -6.95 -0.04 -5.81 16 4 H 0.41 2.72 8.96 -40.82 -0.37 2.35 16 5 C 0.09 1.12 7.28 -83.99 -0.61 0.51 16 6 C -0.13 -1.37 10.08 -39.43 -0.40 -1.77 16 7 C -0.10 -1.00 10.01 -39.54 -0.40 -1.40 16 8 C -0.15 -1.60 9.97 -39.94 -0.40 -2.00 16 9 C -0.06 -0.80 10.05 -39.64 -0.40 -1.20 16 10 C -0.09 -1.17 6.35 -105.14 -0.67 -1.84 16 11 C -0.18 -2.22 5.55 -102.71 -0.57 -2.79 16 12 C 0.06 0.73 5.91 -29.04 -0.17 0.56 16 13 C 0.14 2.41 7.71 -13.02 -0.10 2.31 16 14 N -0.27 -5.56 12.20 32.59 0.40 -5.16 16 15 N -0.29 -6.74 11.63 30.29 0.35 -6.39 16 16 C 0.15 3.21 8.53 52.47 0.45 3.65 16 17 S 0.00 0.11 22.23 -107.50 -2.39 -2.28 16 18 C 0.07 1.73 4.99 36.01 0.18 1.91 16 19 C -0.53 -14.34 9.13 -34.44 -0.31 -14.65 16 20 H 0.07 1.83 7.71 -52.49 -0.40 1.42 16 21 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 22 N -0.88 -25.39 13.29 55.43 0.74 -24.65 16 23 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 O -0.22 -3.99 10.90 3.53 0.04 -3.95 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.78 7.66 -51.93 -0.40 0.39 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.06 1.57 8.14 -51.91 -0.42 1.15 16 38 H 0.06 1.58 8.14 -51.91 -0.42 1.16 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -33.10 358.53 -8.75 -41.84 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.51 Total: 0.08 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.72 Total: -14.73 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 1.44 Total: -42.02 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.39 Total: -2.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.10 -8.75 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004568439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.737 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds