Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48507 * 109.47178 * 239.99982 * 3 2 1 5 5 H 1.48498 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47234 * 119.99942 * 3 2 1 7 7 C 1.37879 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.34139 * 125.15635 * 124.99771 * 10 9 7 12 12 C 1.37977 * 107.89074 * 179.97438 * 11 10 9 13 13 C 1.47266 * 126.81567 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99810 * 5.67047 * 13 12 11 15 15 O 1.21613 * 120.00550 * 185.66646 * 13 12 11 16 16 C 1.46609 * 106.37735 * 0.02562 * 12 11 10 17 17 C 1.48263 * 126.51751 * 180.02562 * 16 12 11 18 18 C 1.39408 * 120.07732 * 43.79311 * 17 16 12 19 19 C 1.37919 * 119.98564 * 180.02562 * 18 17 16 20 20 C 1.38854 * 120.23779 * 0.02562 * 19 18 17 21 21 C 1.39108 * 120.01750 * 359.85583 * 20 19 18 22 22 C 1.38474 * 119.94050 * 359.91713 * 21 20 19 23 23 O 1.36129 * 120.77311 * 180.37419 * 21 20 19 24 24 C 1.43171 * 116.70231 * 342.53091 * 23 21 20 25 25 C 1.53475 * 108.22157 * 46.31626 * 24 23 21 26 26 O 1.36125 * 119.25998 * 179.62364 * 20 19 18 27 27 N 1.31385 * 106.97010 * 359.75683 * 16 12 11 28 28 H 0.97001 * 120.00279 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47098 * 59.99926 * 9 7 2 30 30 H 1.08999 * 109.46995 * 299.99785 * 9 7 2 31 31 H 1.08000 * 126.05438 * 359.94442 * 11 10 9 32 32 H 0.97001 * 119.99831 * 359.97438 * 14 13 12 33 33 H 0.96997 * 120.00455 * 179.97438 * 14 13 12 34 34 H 1.07992 * 120.00959 * 0.08648 * 18 17 16 35 35 H 1.07997 * 119.88051 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.00930 * 180.16407 * 22 21 20 37 37 H 1.09002 * 109.71457 * 165.99279 * 24 23 21 38 38 H 1.08994 * 109.71741 * 286.63174 * 24 23 21 39 39 H 1.09000 * 109.70992 * 59.94049 * 25 24 23 40 40 H 1.09000 * 109.70090 * 180.55364 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.2268 -4.6086 0.8989 12 6 3.2611 -5.4578 0.5631 13 6 3.6597 -6.6861 1.2710 14 7 2.9178 -7.1418 2.2999 15 8 4.6581 -7.2894 0.9272 16 6 3.8856 -4.8940 -0.6376 17 6 5.0429 -5.4540 -1.3759 18 6 5.1098 -6.8219 -1.6365 19 6 6.1875 -7.3409 -2.3230 20 6 7.2086 -6.5057 -2.7563 21 6 7.1458 -5.1396 -2.5011 22 6 6.0633 -4.6135 -1.8163 23 8 8.1345 -4.3056 -2.9254 24 6 9.3806 -4.9140 -3.2817 25 6 9.0842 -6.1305 -4.1694 26 8 8.2667 -7.0402 -3.4254 27 7 3.2210 -3.8013 -0.9384 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 1.5555 -4.7248 1.7370 32 1 2.1216 -6.6605 2.5743 33 1 3.1801 -7.9510 2.7659 34 1 4.3175 -7.4749 -1.3017 35 1 6.2374 -8.4008 -2.5243 36 1 6.0121 -3.5527 -1.6200 37 1 9.9950 -4.1999 -3.8300 38 1 9.9040 -5.2348 -2.3811 39 1 8.5550 -5.8104 -5.0669 40 1 10.0182 -6.6188 -4.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = -13.624645 kcal Electronic energy + Delta-G solvation = -27181.930788 eV Core-core repulsion = 23156.820680 eV Total energy + Delta-G solvation = -4025.110107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -41.14296 -40.54712 -38.46129 -37.52565 -37.17339 -33.83394 -33.42863 -32.24866 -30.94917 -30.41252 -29.61052 -28.55141 -26.93196 -24.84308 -23.61995 -22.95566 -22.22160 -20.91588 -19.92183 -19.38077 -18.48725 -17.65098 -17.13284 -16.96431 -16.49291 -16.20886 -15.55119 -15.31695 -15.06935 -14.77377 -14.59578 -14.35684 -14.02111 -13.93717 -13.75810 -13.67355 -13.59267 -13.08877 -12.56369 -12.41603 -12.00446 -11.83730 -11.60221 -11.17796 -11.09802 -11.03415 -10.91504 -10.42823 -10.35880 -10.29637 -9.82267 -9.60592 -9.43771 -9.04081 -8.72212 -8.37753 -8.07303 -7.59864 -6.35810 -4.41753 1.26596 1.58735 2.05012 2.76210 3.04829 3.14788 3.20958 3.24544 3.25813 3.31750 3.78530 3.89745 4.06474 4.17591 4.23658 4.68948 4.72129 4.76778 4.79632 4.98685 5.05830 5.12516 5.32545 5.42077 5.46623 5.59919 5.62911 5.76178 5.89445 6.08369 6.24166 6.34955 6.59107 6.70838 6.82725 6.85053 6.96593 7.00029 7.07339 7.48930 7.51768 7.59340 7.70358 7.73585 8.29394 8.62584 8.65752 9.25112 10.73142 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.003728 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.276393 B = 7508.587447 C = 9710.202193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.250 3.750 10 N -0.310 5.310 11 C 0.100 3.900 12 C -0.314 4.314 13 C 0.602 3.398 14 N -0.860 5.860 15 O -0.549 6.549 16 C 0.139 3.861 17 C 0.005 3.995 18 C -0.049 4.049 19 C -0.120 4.120 20 C 0.052 3.948 21 C 0.040 3.960 22 C -0.083 4.083 23 O -0.307 6.307 24 C 0.021 3.979 25 C 0.021 3.979 26 O -0.310 6.310 27 N -0.257 5.257 28 H 0.269 0.731 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.177 0.823 32 H 0.397 0.603 33 H 0.398 0.602 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 -13.659 -1.581 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.133 3.867 10 N -0.086 5.086 11 C -0.055 4.055 12 C -0.330 4.330 13 C 0.390 3.610 14 N -0.424 5.424 15 O -0.427 6.427 16 C -0.029 4.029 17 C 0.002 3.998 18 C -0.069 4.069 19 C -0.139 4.139 20 C 0.007 3.993 21 C -0.005 4.005 22 C -0.103 4.103 23 O -0.222 6.222 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.224 6.224 27 N -0.078 5.078 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.194 0.806 32 H 0.225 0.775 33 H 0.229 0.771 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.704 -12.599 -2.794 16.766 hybrid contribution 0.177 0.380 1.001 1.085 sum 10.881 -12.218 -1.794 16.459 Atomic orbital electron populations 1.69893 1.06069 1.27999 1.49169 1.24920 0.94993 0.99614 0.94251 0.86363 0.79411 0.81549 0.79126 1.19744 1.20955 1.19938 1.21161 0.94033 0.89126 1.52966 0.91156 1.19944 0.85671 0.81264 0.99788 1.49263 1.23244 1.18970 1.17109 1.22916 0.97796 0.89394 0.95357 1.20914 1.05233 1.02615 1.04258 1.17240 0.82063 0.83020 0.78699 1.43705 1.30899 1.31262 1.36499 1.90793 1.26134 1.59365 1.66440 1.21531 0.95160 0.92601 0.93601 1.17289 0.91707 0.92483 0.98293 1.20832 0.97478 0.93628 0.94917 1.20227 0.92013 0.99580 1.02032 1.18947 0.90249 0.91275 0.98865 1.18600 0.91736 0.88379 1.01773 1.20438 0.91915 1.00809 0.97125 1.86333 1.20804 1.33485 1.81553 1.23573 0.85359 0.96676 0.99884 1.23581 0.96267 0.91519 0.94128 1.86279 1.38419 1.35180 1.62546 1.77532 1.00970 1.16262 1.13025 0.92099 0.93054 0.92279 0.80645 0.77527 0.77134 0.84715 0.84867 0.84418 0.86374 0.90696 0.90610 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.13 9.21 -34.44 -0.32 -14.45 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.52 16 9 C 0.25 5.84 6.21 -5.19 -0.03 5.81 16 10 N -0.31 -6.51 3.62 -62.03 -0.22 -6.73 16 11 C 0.10 1.66 10.88 -16.64 -0.18 1.48 16 12 C -0.31 -5.47 6.27 -102.95 -0.65 -6.11 16 13 C 0.60 9.32 7.93 -12.59 -0.10 9.22 16 14 N -0.86 -8.96 8.86 30.40 0.27 -8.69 16 15 O -0.55 -9.96 14.36 5.27 0.08 -9.89 16 16 C 0.14 2.75 6.86 -80.56 -0.55 2.20 16 17 C 0.00 0.08 5.53 -104.93 -0.58 -0.50 16 18 C -0.05 -0.81 7.72 -39.26 -0.30 -1.11 16 19 C -0.12 -1.81 9.94 -39.47 -0.39 -2.20 16 20 C 0.05 0.80 6.50 -39.03 -0.25 0.54 16 21 C 0.04 0.65 6.49 -39.17 -0.25 0.40 16 22 C -0.08 -1.50 9.69 -39.08 -0.38 -1.88 16 23 O -0.31 -4.58 10.41 -32.93 -0.34 -4.92 16 24 C 0.02 0.21 7.26 37.40 0.27 0.48 16 25 C 0.02 0.20 7.26 37.40 0.27 0.47 16 26 O -0.31 -4.15 10.41 -32.91 -0.34 -4.49 16 27 N -0.26 -5.70 12.31 34.57 0.43 -5.28 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 31 H 0.18 2.08 7.51 -52.49 -0.39 1.68 16 32 H 0.40 3.12 7.81 -40.82 -0.32 2.80 16 33 H 0.40 3.42 8.93 -40.82 -0.36 3.05 16 34 H 0.14 2.16 6.94 -52.49 -0.36 1.80 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 2.57 8.06 -52.48 -0.42 2.14 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -33.19 349.53 -7.07 -40.26 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.36 Total: 6.19 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.55 Total: -4.01 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.21 Total: -44.17 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.61 Total: -19.30 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.19 -7.07 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.633 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds