Wall clock time and date at job start Tue Mar 31 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00117 * 2 1 4 4 H 1.48507 * 109.47178 * 239.99982 * 3 2 1 5 5 H 1.48498 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47234 * 119.99942 * 3 2 1 7 7 C 1.37879 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.34139 * 125.15635 * 124.99771 * 10 9 7 12 12 C 1.37977 * 107.89074 * 179.97438 * 11 10 9 13 13 C 1.47266 * 126.81567 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99810 * 5.67047 * 13 12 11 15 15 O 1.21613 * 120.00550 * 185.66646 * 13 12 11 16 16 C 1.46609 * 106.37735 * 0.02562 * 12 11 10 17 17 C 1.48263 * 126.51751 * 180.02562 * 16 12 11 18 18 C 1.39408 * 120.07732 * 43.79311 * 17 16 12 19 19 C 1.37919 * 119.98564 * 180.02562 * 18 17 16 20 20 C 1.38854 * 120.23779 * 0.02562 * 19 18 17 21 21 C 1.39108 * 120.01750 * 359.85583 * 20 19 18 22 22 C 1.38474 * 119.94050 * 359.91713 * 21 20 19 23 23 O 1.36129 * 120.77311 * 180.37419 * 21 20 19 24 24 C 1.43171 * 116.70231 * 342.53091 * 23 21 20 25 25 C 1.53475 * 108.22157 * 46.31626 * 24 23 21 26 26 O 1.36125 * 119.25998 * 179.62364 * 20 19 18 27 27 N 1.31385 * 106.97010 * 359.75683 * 16 12 11 28 28 H 0.97001 * 120.00279 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47098 * 59.99926 * 9 7 2 30 30 H 1.08999 * 109.46995 * 299.99785 * 9 7 2 31 31 H 1.08000 * 126.05438 * 359.94442 * 11 10 9 32 32 H 0.97001 * 119.99831 * 359.97438 * 14 13 12 33 33 H 0.96997 * 120.00455 * 179.97438 * 14 13 12 34 34 H 1.07992 * 120.00959 * 0.08648 * 18 17 16 35 35 H 1.07997 * 119.88051 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.00930 * 180.16407 * 22 21 20 37 37 H 1.09002 * 109.71457 * 165.99279 * 24 23 21 38 38 H 1.08994 * 109.71741 * 286.63174 * 24 23 21 39 39 H 1.09000 * 109.70992 * 59.94049 * 25 24 23 40 40 H 1.09000 * 109.70090 * 180.55364 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.2268 -4.6086 0.8989 12 6 3.2611 -5.4578 0.5631 13 6 3.6597 -6.6861 1.2710 14 7 2.9178 -7.1418 2.2999 15 8 4.6581 -7.2894 0.9272 16 6 3.8856 -4.8940 -0.6376 17 6 5.0429 -5.4540 -1.3759 18 6 5.1098 -6.8219 -1.6365 19 6 6.1875 -7.3409 -2.3230 20 6 7.2086 -6.5057 -2.7563 21 6 7.1458 -5.1396 -2.5011 22 6 6.0633 -4.6135 -1.8163 23 8 8.1345 -4.3056 -2.9254 24 6 9.3806 -4.9140 -3.2817 25 6 9.0842 -6.1305 -4.1694 26 8 8.2667 -7.0402 -3.4254 27 7 3.2210 -3.8013 -0.9384 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 1.5555 -4.7248 1.7370 32 1 2.1216 -6.6605 2.5743 33 1 3.1801 -7.9510 2.7659 34 1 4.3175 -7.4749 -1.3017 35 1 6.2374 -8.4008 -2.5243 36 1 6.0121 -3.5527 -1.6200 37 1 9.9950 -4.1999 -3.8300 38 1 9.9040 -5.2348 -2.3811 39 1 8.5550 -5.8104 -5.0669 40 1 10.0182 -6.6188 -4.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:05 Heat of formation + Delta-G solvation = -37.931882 kcal Electronic energy + Delta-G solvation = -27182.984829 eV Core-core repulsion = 23156.820680 eV Total energy + Delta-G solvation = -4026.164148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 7.60 seconds Orbital eigenvalues (eV) -42.29261 -41.92645 -39.71963 -38.72624 -38.24028 -35.68073 -34.53898 -33.85225 -32.03690 -31.78782 -30.98912 -29.79593 -28.55170 -25.97474 -25.26192 -24.21281 -23.57028 -22.15378 -21.23865 -20.64356 -19.60325 -18.92449 -18.62442 -18.20118 -17.89862 -17.33902 -17.00369 -16.49411 -16.39352 -16.18015 -15.91139 -15.47101 -15.38018 -15.22220 -15.01429 -14.91759 -14.84465 -14.29195 -14.21367 -13.74934 -13.65503 -13.13132 -12.99919 -12.86090 -12.69518 -12.37553 -12.23689 -11.98285 -11.83668 -11.60419 -11.45286 -10.90571 -10.76913 -10.53206 -10.46020 -9.68115 -9.47769 -8.89559 -8.36952 -6.49494 -0.03251 0.32259 0.72427 1.32120 1.36997 1.39192 1.46808 1.66715 2.03212 2.25963 2.32942 2.52881 2.76772 2.82425 2.96818 3.28551 3.47515 3.66163 3.69206 3.97177 4.05239 4.15686 4.19933 4.28388 4.39170 4.46648 4.55465 4.59596 4.61537 4.79071 4.89989 4.93447 5.06232 5.10514 5.39237 5.51786 5.57124 5.61544 5.79152 5.89598 6.03382 6.12945 6.39498 6.58574 6.61839 6.82696 7.20487 7.55146 8.70890 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.003728 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.276393 B = 7508.587447 C = 9710.202193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.552 4.552 8 H 0.050 0.950 9 C 0.265 3.735 10 N -0.334 5.334 11 C 0.115 3.885 12 C -0.318 4.318 13 C 0.603 3.397 14 N -0.832 5.832 15 O -0.578 6.578 16 C 0.132 3.868 17 C -0.017 4.017 18 C -0.049 4.049 19 C -0.117 4.117 20 C 0.056 3.944 21 C 0.037 3.963 22 C -0.105 4.105 23 O -0.328 6.328 24 C 0.011 3.989 25 C 0.015 3.985 26 O -0.315 6.315 27 N -0.309 5.309 28 H 0.274 0.726 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.413 0.587 33 H 0.413 0.587 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.117 0.883 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.550 -15.090 -1.037 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.068 0.932 9 C 0.147 3.853 10 N -0.110 5.110 11 C -0.038 4.038 12 C -0.334 4.334 13 C 0.390 3.610 14 N -0.397 5.397 15 O -0.458 6.458 16 C -0.035 4.035 17 C -0.020 4.020 18 C -0.069 4.069 19 C -0.135 4.135 20 C 0.011 3.989 21 C -0.008 4.008 22 C -0.125 4.125 23 O -0.243 6.243 24 C -0.063 4.063 25 C -0.059 4.059 26 O -0.229 6.229 27 N -0.130 5.130 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.244 0.756 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.135 0.865 37 H 0.171 0.829 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.830 -14.054 -2.216 18.503 hybrid contribution -0.028 0.730 0.781 1.069 sum 11.801 -13.324 -1.435 17.857 Atomic orbital electron populations 1.69950 1.06946 1.28882 1.49604 1.25597 0.95771 1.02320 0.93834 0.85525 0.78440 0.78458 0.78807 1.20432 1.19609 1.19398 1.21332 0.93322 0.91092 1.53266 0.93218 1.19535 0.85613 0.81115 0.99061 1.48986 1.23571 1.19845 1.18608 1.23685 0.97674 0.87267 0.95142 1.21212 1.04995 1.03559 1.03628 1.17023 0.82150 0.82308 0.79527 1.43396 1.30398 1.31347 1.34518 1.90780 1.27535 1.59925 1.67599 1.21982 0.95071 0.92089 0.94395 1.17439 0.91675 0.93430 0.99438 1.20862 0.98185 0.92697 0.95140 1.20516 0.91250 1.00843 1.00916 1.19013 0.90827 0.90661 0.98419 1.18602 0.91738 0.89113 1.01336 1.20364 0.93322 0.99913 0.98868 1.86301 1.22135 1.34488 1.81414 1.24015 0.83615 0.97981 1.00738 1.23984 0.97349 0.91189 0.93401 1.86272 1.37893 1.36310 1.62461 1.77449 1.02477 1.18191 1.14833 0.91733 0.95495 0.90955 0.75694 0.75639 0.75478 0.84423 0.82210 0.86514 0.82858 0.90226 0.90178 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 13.29 21.45 0.28 -49.63 16 2 C 0.03 1.39 5.46 84.66 0.46 1.85 16 3 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.04 9.21 25.60 0.24 -29.81 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.26 12.70 6.21 85.63 0.53 13.23 16 10 N -0.33 -14.36 3.62 -350.16 -1.27 -15.62 16 11 C 0.11 3.72 10.88 84.28 0.92 4.64 16 12 C -0.32 -10.98 6.27 -18.78 -0.12 -11.10 16 13 C 0.60 17.84 7.93 86.62 0.69 18.52 16 14 N -0.83 -14.94 8.86 -176.00 -1.56 -16.50 16 15 O -0.58 -20.47 14.36 -4.07 -0.06 -20.53 16 16 C 0.13 5.46 6.86 44.07 0.30 5.77 16 17 C -0.02 -0.67 5.53 -20.06 -0.11 -0.78 16 18 C -0.05 -1.64 7.72 22.48 0.17 -1.47 16 19 C -0.12 -3.43 9.94 22.34 0.22 -3.21 16 20 C 0.06 1.70 6.50 22.63 0.15 1.85 16 21 C 0.04 1.24 6.49 22.53 0.15 1.39 16 22 C -0.10 -4.02 9.69 22.59 0.22 -3.80 16 23 O -0.33 -9.77 10.41 -82.80 -0.86 -10.63 16 24 C 0.01 0.20 7.26 72.14 0.52 0.72 16 25 C 0.02 0.24 7.26 72.14 0.52 0.77 16 26 O -0.31 -7.75 10.41 -82.75 -0.86 -8.61 16 27 N -0.31 -14.43 12.31 -44.53 -0.55 -14.97 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 3.23 8.05 -2.39 -0.02 3.21 16 31 H 0.23 4.62 7.51 -2.91 -0.02 4.59 16 32 H 0.41 4.99 7.81 -92.71 -0.72 4.26 16 33 H 0.41 5.79 8.93 -92.71 -0.83 4.96 16 34 H 0.14 4.43 6.94 -2.91 -0.02 4.41 16 35 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.16 1.19 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.43 349.53 1.59 -73.85 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.43 Total: 19.07 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.86 Total: -1.43 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.09 Total: -96.73 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.78 Total: -39.78 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.43 1.59 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.914 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.60 seconds