Wall clock time and date at job start Tue Mar 31 2020 04:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00106 * 2 1 4 4 C 1.50699 * 109.47051 * 269.99722 * 3 2 1 5 5 H 1.07996 * 120.00133 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99710 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00307 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99862 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47183 * 90.00471 * 8 6 4 10 10 H 1.48496 * 109.46953 * 210.00146 * 8 6 4 11 11 H 1.48503 * 109.47052 * 330.00453 * 8 6 4 12 12 C 1.34773 * 119.99900 * 179.97438 * 2 1 3 13 13 O 1.21736 * 120.00033 * 179.97438 * 12 2 1 14 14 C 1.46410 * 120.00454 * 359.96626 * 12 2 1 15 15 C 1.36656 * 125.14567 * 171.24747 * 14 12 2 16 16 C 1.36609 * 115.39933 * 180.02562 * 15 14 12 17 17 C 1.38820 * 113.38726 * 359.79380 * 16 15 14 18 18 S 1.74613 * 110.34474 * 0.28743 * 17 16 15 19 19 C 1.47670 * 120.03813 * 180.31687 * 17 16 15 20 20 C 1.38549 * 122.99798 * 194.35785 * 19 17 16 21 21 C 1.38270 * 119.42417 * 179.05462 * 20 19 17 22 22 C 1.38449 * 120.06273 * 359.78706 * 21 20 19 23 23 C 1.38221 * 120.82837 * 0.30183 * 22 21 20 24 24 C 1.38479 * 120.04176 * 0.10120 * 23 22 21 25 25 O 1.35384 * 121.03331 * 178.77875 * 24 23 22 26 26 C 1.42737 * 120.53153 * 146.68617 * 25 24 23 27 27 H 1.09004 * 109.47124 * 263.42657 * 1 2 3 28 28 H 1.09004 * 109.47278 * 23.42680 * 1 2 3 29 29 H 1.09001 * 109.46968 * 143.42676 * 1 2 3 30 30 H 1.08994 * 109.46916 * 30.00120 * 3 2 1 31 31 H 1.09007 * 109.47012 * 149.99812 * 3 2 1 32 32 H 0.96994 * 120.00066 * 180.02562 * 7 6 4 33 33 H 1.08005 * 122.29717 * 359.97291 * 15 14 12 34 34 H 1.07997 * 120.28722 * 359.02892 * 20 19 17 35 35 H 1.07997 * 119.96183 * 179.76408 * 21 20 19 36 36 H 1.08001 * 119.58331 * 180.02562 * 22 21 20 37 37 H 1.07992 * 119.98031 * 180.10687 * 23 22 21 38 38 H 1.09006 * 109.52745 * 285.33746 * 26 25 24 39 39 H 1.09001 * 109.52957 * 165.13052 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6181 -0.6731 8 14 3.4369 3.4175 -3.4339 9 1 2.3066 4.2602 -3.9002 10 1 4.6969 4.2007 -3.4966 11 1 3.5541 2.2205 -4.3050 12 6 2.1388 -1.1672 0.0005 13 8 3.3562 -1.1672 0.0001 14 6 1.4068 -2.4352 0.0018 15 6 1.9699 -3.6687 -0.1676 16 6 1.0988 -4.7204 -0.1317 17 6 -0.2190 -4.3375 0.0780 18 16 -0.3310 -2.6010 0.2218 19 6 -1.2831 -5.3589 0.1497 20 6 -2.6313 -5.0511 0.0665 21 6 -3.5653 -6.0691 0.1227 22 6 -3.1513 -7.3835 0.2565 23 6 -1.8081 -7.6979 0.3418 24 6 -0.8566 -6.6928 0.2961 25 8 0.4631 -6.9756 0.4025 26 6 1.4308 -6.1957 -0.2994 27 1 -0.3633 -0.1176 1.0209 28 1 -0.3634 0.9430 -0.4086 29 1 -0.3633 -0.8253 -0.6123 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5139 32 1 4.0295 4.4443 -0.8503 33 1 3.0307 -3.8029 -0.3202 34 1 -2.9501 -4.0248 -0.0408 35 1 -4.6187 -5.8386 0.0625 36 1 -3.8875 -8.1726 0.2991 37 1 -1.5004 -8.7279 0.4442 38 1 1.4102 -6.4558 -1.3577 39 1 2.4227 -6.3944 0.1064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005051064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:14 Heat of formation + Delta-G solvation = -1.770077 kcal Electronic energy + Delta-G solvation = -24478.456852 eV Core-core repulsion = 20864.320917 eV Total energy + Delta-G solvation = -3614.135935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.087 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82601 -39.15734 -37.89196 -36.75580 -34.95966 -32.79437 -32.23335 -30.78803 -29.81061 -28.08797 -26.29348 -26.25508 -24.79019 -23.17948 -22.60609 -21.68517 -19.57877 -18.64423 -17.98799 -17.60039 -16.61009 -16.48853 -16.29393 -15.76984 -15.32740 -14.95571 -14.80256 -14.70130 -14.34925 -14.11284 -13.62691 -13.14501 -13.10191 -13.01610 -12.92657 -12.59689 -12.39745 -12.09763 -12.02009 -11.70681 -11.47388 -11.31053 -11.13870 -10.92924 -10.68869 -10.34457 -10.18648 -9.81747 -9.69556 -9.26305 -8.81677 -8.52389 -8.48356 -7.94093 -7.70406 -6.10312 -4.15715 0.05596 1.06061 1.29430 1.46344 1.86243 2.33549 3.01487 3.26933 3.33938 3.38020 3.52650 3.63771 3.80716 4.31872 4.38218 4.40985 4.58564 4.72254 4.89912 4.99104 5.05887 5.08778 5.15532 5.24300 5.27691 5.32574 5.42639 5.61884 5.64822 5.81852 5.96888 5.99411 6.03549 6.13557 6.18985 6.31163 6.48237 6.92590 7.19373 7.31618 7.38727 7.85175 8.13909 8.19159 8.77037 8.92438 9.49574 10.97818 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.024438 B = 0.002838 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.487294 B = 9865.103038 C =10336.481718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.574 3.426 13 O -0.525 6.525 14 C -0.239 4.239 15 C -0.052 4.052 16 C -0.163 4.163 17 C -0.185 4.185 18 S 0.243 5.757 19 C -0.079 4.079 20 C -0.076 4.076 21 C -0.144 4.144 22 C -0.086 4.086 23 C -0.144 4.144 24 C 0.142 3.858 25 O -0.318 6.318 26 C 0.141 3.859 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 -20.551 2.316 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.324 5.324 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.360 3.640 13 O -0.403 6.403 14 C -0.360 4.360 15 C -0.084 4.084 16 C -0.176 4.176 17 C -0.303 4.303 18 S 0.516 5.484 19 C -0.081 4.081 20 C -0.095 4.095 21 C -0.162 4.162 22 C -0.105 4.105 23 C -0.163 4.163 24 C 0.095 3.905 25 O -0.232 6.232 26 C 0.065 3.935 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.175 -19.393 2.714 24.774 hybrid contribution 1.278 -0.326 -1.351 1.888 sum -13.897 -19.719 1.363 24.163 Atomic orbital electron populations 1.21861 0.82043 1.02952 1.00893 1.48068 1.05798 1.07865 1.70716 1.19404 0.92652 0.77288 0.97876 1.21410 1.36944 1.06431 0.92099 0.92341 1.24933 0.95187 0.96306 0.97578 1.69926 1.38202 1.14295 1.30800 0.86472 0.77743 0.78625 0.84466 1.20574 1.20998 1.19837 1.16844 0.86929 0.81885 0.78323 1.90823 1.12438 1.86432 1.50652 1.24836 0.96506 0.98687 1.15996 1.19813 1.01230 0.89174 0.98169 1.20448 0.92141 0.96822 1.08197 1.24795 0.96078 1.00750 1.08702 1.84282 1.04160 0.94195 1.65787 1.18220 0.92401 0.90791 1.06704 1.20848 0.90842 0.99841 0.97998 1.21078 0.99596 0.92524 1.03025 1.21033 0.94789 0.96761 0.97919 1.20572 0.91690 0.98465 1.05567 1.19052 0.83399 0.91620 0.96466 1.85480 1.12918 1.56816 1.67961 1.21659 0.90608 0.84454 0.96782 0.92527 0.88414 0.92163 0.94503 0.93390 0.92591 0.83030 0.85417 0.85323 0.85225 0.84873 0.90834 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.90 59.84 0.53 1.63 16 2 N -0.59 -12.75 2.86 -184.60 -0.53 -13.28 16 3 C 0.25 6.38 5.13 -5.19 -0.03 6.35 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.57 12.55 7.63 -12.97 -0.10 12.45 16 13 O -0.52 -13.54 16.40 5.16 0.08 -13.46 16 14 C -0.24 -4.15 6.22 -36.87 -0.23 -4.37 16 15 C -0.05 -0.81 9.79 -40.74 -0.40 -1.21 16 16 C -0.16 -2.23 5.95 -104.28 -0.62 -2.85 16 17 C -0.19 -2.52 6.48 -35.52 -0.23 -2.75 16 18 S 0.24 3.24 17.89 -107.50 -1.92 1.32 16 19 C -0.08 -0.97 5.87 -104.96 -0.62 -1.58 16 20 C -0.08 -0.77 9.82 -39.45 -0.39 -1.15 16 21 C -0.14 -1.17 10.05 -39.49 -0.40 -1.57 16 22 C -0.09 -0.67 10.01 -39.51 -0.40 -1.07 16 23 C -0.14 -1.36 10.00 -39.50 -0.39 -1.75 16 24 C 0.14 1.69 6.53 -38.53 -0.25 1.44 16 25 O -0.32 -3.87 10.17 -17.84 -0.18 -4.05 16 26 C 0.14 1.53 7.40 36.72 0.27 1.81 16 27 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 28 H 0.10 1.51 8.02 -51.93 -0.42 1.10 16 29 H 0.06 0.87 4.62 -23.08 -0.11 0.76 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.05 1.40 7.42 -51.92 -0.39 1.01 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.15 2.26 8.03 -52.48 -0.42 1.84 16 34 H 0.13 1.10 8.02 -52.49 -0.42 0.68 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -34.01 344.59 -9.53 -43.55 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.23 Total: -2.23 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.66 Total: -8.19 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.21 Total: -38.78 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.10 Total: -17.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.92 Total: 1.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.01 -9.53 -43.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005051064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.776 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds