Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41747 * 119.99868 * 2 1 4 4 C 1.34904 * 120.00003 * 5.46559 * 3 2 1 5 5 C 1.47190 * 119.99935 * 174.98825 * 4 3 2 6 6 C 1.39838 * 120.17050 * 359.72964 * 5 4 3 7 7 C 1.37889 * 119.82361 * 179.72017 * 6 5 4 8 8 C 1.38400 * 120.17185 * 0.54827 * 7 6 5 9 9 C 1.38396 * 120.34708 * 359.72771 * 8 7 6 10 10 C 1.37892 * 120.17018 * 359.97438 * 9 8 7 11 11 N 1.30293 * 119.99817 * 180.02562 * 2 1 3 12 12 N 1.40100 * 119.99758 * 185.23501 * 11 2 1 13 13 C 1.38232 * 120.00088 * 175.00269 * 12 11 2 14 14 N 1.31594 * 125.99494 * 359.74882 * 13 12 11 15 15 C 1.33786 * 109.67033 * 180.02562 * 14 13 12 16 16 S 1.76201 * 125.52516 * 180.02562 * 15 14 13 17 17 C 1.76202 * 100.00213 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99975 * 359.97438 * 17 16 15 19 19 C 1.38667 * 120.00141 * 180.02562 * 17 16 15 20 20 N 1.31658 * 120.00162 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47030 * 119.99420 * 21 19 17 24 24 H 1.48498 * 109.47454 * 240.00012 * 21 19 17 25 25 N 1.31319 * 108.95059 * 0.02562 * 15 14 13 26 26 N 1.35120 * 125.99981 * 179.44341 * 13 12 11 27 27 H 0.97002 * 126.77794 * 359.97438 * 26 13 12 28 28 H 1.08999 * 109.46516 * 269.99743 * 1 2 3 29 29 H 1.08993 * 109.47320 * 29.99450 * 1 2 3 30 30 H 1.08992 * 109.46870 * 150.00084 * 1 2 3 31 31 H 1.07998 * 120.00084 * 185.46267 * 3 2 1 32 32 H 1.08002 * 120.00531 * 354.98975 * 4 3 2 33 33 H 1.08000 * 120.08523 * 359.97438 * 6 5 4 34 34 H 1.08001 * 119.91073 * 180.29230 * 7 6 5 35 35 H 1.08003 * 119.82528 * 179.74308 * 8 7 6 36 36 H 1.08004 * 119.91605 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.08282 * 180.02562 * 10 9 8 38 38 H 0.96997 * 120.00001 * 354.73000 * 12 11 2 39 39 H 0.97000 * 119.99661 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2276 0.0000 4 6 1.5459 2.3932 0.1113 5 6 2.2868 3.6602 0.2224 6 6 3.6851 3.6592 0.2186 7 6 4.3720 4.8508 0.3172 8 6 3.6811 6.0446 0.4312 9 6 2.2972 6.0533 0.4414 10 6 1.5959 4.8705 0.3375 11 7 2.1585 -1.1284 -0.0005 12 7 3.5551 -1.1310 0.1102 13 6 4.2381 -2.3283 0.2137 14 7 3.6980 -3.5283 0.2252 15 6 4.6580 -4.4532 0.3383 16 16 4.3998 -6.1953 0.3942 17 6 6.0664 -6.7469 0.5457 18 1 6.8723 -6.0286 0.5757 19 6 6.3432 -8.1033 0.6252 20 7 5.3608 -8.9790 0.5880 21 14 8.1101 -8.6882 0.7851 22 1 9.0201 -7.5148 0.8045 23 1 8.2653 -9.4552 2.0471 24 1 8.4496 -9.5593 -0.3686 25 7 5.8239 -3.8522 0.4010 26 7 5.5777 -2.4723 0.3151 27 1 6.2388 -1.7626 0.3288 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 3.2921 1.2297 -0.0890 32 1 0.4659 2.3968 0.1189 33 1 4.2257 2.7280 0.1345 34 1 5.4520 4.8521 0.3097 35 1 4.2247 6.9743 0.5123 36 1 1.7650 6.9889 0.5302 37 1 0.5160 4.8790 0.3452 38 1 4.0432 -0.2927 0.1102 39 1 5.5545 -9.9279 0.6440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006854969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = 177.753858 kcal Electronic energy + Delta-G solvation = -22836.474599 eV Core-core repulsion = 19294.708908 eV Total energy + Delta-G solvation = -3541.765691 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.101 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.09059 -39.74353 -38.37981 -35.15653 -33.10795 -32.55152 -31.74918 -31.46367 -30.18530 -29.06419 -27.59505 -25.51116 -24.50754 -22.99450 -22.40913 -21.55889 -20.89386 -19.00821 -18.47248 -17.79677 -17.43415 -16.83048 -15.74962 -15.60042 -15.25462 -15.16799 -14.84349 -14.65883 -14.27952 -14.01046 -13.91276 -13.73034 -13.39378 -12.90975 -12.55180 -12.42232 -12.25871 -11.74205 -11.45702 -11.35892 -11.15596 -11.06886 -11.00002 -10.89757 -10.36564 -10.09204 -10.07490 -9.71684 -9.43960 -9.34706 -9.09394 -8.67375 -8.55196 -7.70027 -6.63239 -6.33723 -4.05734 0.05781 0.93558 1.38364 1.97473 2.33948 2.77490 2.91301 3.22426 3.28278 3.37321 3.45749 3.75418 3.78492 4.14891 4.16883 4.20347 4.40629 4.48182 4.61933 4.68116 4.76951 4.94579 5.01592 5.08318 5.14889 5.33973 5.38353 5.44733 5.46405 5.52751 5.69207 5.74650 5.92041 6.00803 6.03677 6.15872 6.24540 6.28862 6.49272 6.70237 7.18383 7.65342 7.77319 7.91701 8.43520 8.87987 9.16848 10.74178 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025284 B = 0.001947 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.143202 B =14376.215825 C =15451.541666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.089 3.911 3 C -0.161 4.161 4 C -0.066 4.066 5 C -0.065 4.065 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.121 4.121 10 C -0.103 4.103 11 N -0.176 5.176 12 N -0.550 5.550 13 C 0.527 3.473 14 N -0.529 5.529 15 C 0.219 3.781 16 S 0.160 5.840 17 C -0.543 4.543 18 H 0.097 0.903 19 C 0.075 3.925 20 N -0.874 5.874 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.279 1.279 25 N -0.323 5.323 26 N -0.523 5.523 27 H 0.425 0.575 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.393 0.607 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 30.711 -0.880 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.181 4.181 4 C -0.090 4.090 5 C -0.065 4.065 6 C -0.128 4.128 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.139 4.139 10 C -0.121 4.121 11 N 0.016 4.984 12 N -0.283 5.283 13 C 0.159 3.841 14 N -0.267 5.267 15 C -0.167 4.167 16 S 0.389 5.611 17 C -0.692 4.692 18 H 0.115 0.885 19 C -0.134 4.134 20 N -0.510 5.510 21 Si 0.754 3.246 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.205 1.205 25 N -0.159 5.159 26 N -0.247 5.247 27 H 0.268 0.732 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.234 0.766 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.680 28.126 -0.928 29.450 hybrid contribution 3.201 2.422 0.114 4.016 sum -5.479 30.548 -0.814 31.046 Atomic orbital electron populations 1.20599 0.87008 1.03916 1.03599 1.22503 0.97435 0.88637 1.01411 1.21316 0.99705 0.93242 1.03853 1.22360 0.99726 0.90488 0.96441 1.19086 0.93139 0.93272 1.00966 1.21390 0.93535 0.98326 0.99541 1.21124 1.00155 0.92456 0.99976 1.21300 0.94520 0.98161 0.99475 1.21129 0.94374 0.98177 1.00204 1.21366 0.99983 0.91650 0.99086 1.75370 0.88878 1.24348 1.09855 1.43708 1.02209 1.03404 1.78974 1.19769 0.81229 0.87284 0.95857 1.70911 1.30575 0.94758 1.30468 1.27371 0.87374 1.04290 0.97693 1.83781 1.11984 0.79425 1.85912 1.23256 0.93057 0.95057 1.57838 0.88524 1.25031 0.99171 0.95298 0.93875 1.69980 1.31678 1.02439 1.46864 0.85958 0.82122 0.78668 0.77885 1.19258 1.20460 1.20457 1.78684 1.20284 0.82578 1.34380 1.47906 1.04075 1.08592 1.64176 0.73209 0.89926 0.90384 0.89788 0.86864 0.84733 0.86064 0.85808 0.85959 0.85762 0.85475 0.76618 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.56 36.01 0.34 -0.33 16 2 C 0.09 0.91 6.95 -81.90 -0.57 0.34 16 3 C -0.16 -1.31 8.65 -39.43 -0.34 -1.65 16 4 C -0.07 -0.43 9.19 -37.13 -0.34 -0.77 16 5 C -0.06 -0.46 5.87 -105.06 -0.62 -1.07 16 6 C -0.11 -0.78 9.41 -39.11 -0.37 -1.15 16 7 C -0.12 -0.77 10.03 -39.65 -0.40 -1.17 16 8 C -0.12 -0.69 10.04 -39.46 -0.40 -1.08 16 9 C -0.12 -0.69 10.03 -39.65 -0.40 -1.08 16 10 C -0.10 -0.62 9.80 -39.11 -0.38 -1.00 16 11 N -0.18 -2.58 11.35 33.97 0.39 -2.20 16 12 N -0.55 -7.97 6.29 30.05 0.19 -7.78 16 13 C 0.53 10.06 9.12 -320.74 -2.92 7.13 16 14 N -0.53 -12.43 11.12 -14.13 -0.16 -12.59 16 15 C 0.22 5.60 8.20 -90.82 -0.74 4.86 16 16 S 0.16 4.41 21.89 -107.50 -2.35 2.06 16 17 C -0.54 -15.78 9.36 30.89 0.29 -15.49 16 18 H 0.10 2.83 6.87 -52.48 -0.36 2.47 16 19 C 0.08 2.13 5.49 -17.47 -0.10 2.03 16 20 N -0.87 -25.41 13.22 55.48 0.73 -24.68 16 21 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.32 -7.76 11.51 30.16 0.35 -7.41 16 26 N -0.52 -9.59 7.47 30.04 0.22 -9.37 16 27 H 0.42 5.67 8.96 -182.35 -1.63 4.04 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.35 6.48 -51.93 -0.34 0.02 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.85 4.16 -52.49 -0.22 0.63 16 32 H 0.14 0.60 6.16 -52.49 -0.32 0.28 16 33 H 0.12 0.74 6.18 -52.49 -0.32 0.41 16 34 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.12 0.49 8.06 -52.48 -0.42 0.06 16 36 H 0.12 0.45 8.06 -52.48 -0.42 0.02 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.39 4.10 6.51 -182.60 -1.19 2.91 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -36.39 357.56 -13.27 -49.66 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.06 Total: 0.67 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -6.94 Total: -10.44 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: 1.72 Total: -64.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -2.35 Total: 2.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.39 -13.27 -49.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006854969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.413 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds