Wall clock time and date at job start Tue Mar 31 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00017 * 2 1 4 4 H 1.48497 * 109.46976 * 270.00160 * 3 2 1 5 5 H 1.48497 * 109.46820 * 30.00185 * 3 2 1 6 6 H 1.48499 * 109.46886 * 150.00256 * 3 2 1 7 7 C 1.37884 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99619 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99471 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46576 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99798 * 90.00168 * 10 9 7 12 12 O 1.21284 * 119.99887 * 5.20377 * 11 10 9 13 13 C 1.50707 * 119.99803 * 185.20744 * 11 10 9 14 14 S 1.81006 * 109.46842 * 184.03753 * 13 11 10 15 15 C 1.76196 * 99.99590 * 179.97438 * 14 13 11 16 16 N 1.32555 * 119.22533 * 359.73611 * 15 14 13 17 17 C 1.32261 * 120.73437 * 179.71908 * 16 15 14 18 18 C 1.38630 * 119.20306 * 0.53636 * 17 16 15 19 19 C 1.38617 * 118.56553 * 359.73324 * 18 17 16 20 20 N 1.32254 * 119.20629 * 0.02562 * 19 18 17 21 21 C 1.39921 * 120.00285 * 270.00233 * 10 9 7 22 22 C 1.38871 * 120.07560 * 112.26467 * 21 10 9 23 23 C 1.38112 * 119.92989 * 179.74923 * 22 21 10 24 24 C 1.38284 * 120.06907 * 0.52618 * 23 22 21 25 25 C 1.38271 * 120.14144 * 359.74721 * 24 23 22 26 26 C 1.38113 * 120.07515 * 359.97438 * 25 24 23 27 27 H 0.97007 * 119.99742 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47471 * 60.00451 * 9 7 2 29 29 H 1.08993 * 109.47044 * 299.99420 * 9 7 2 30 30 H 1.08999 * 109.46654 * 304.03636 * 13 11 10 31 31 H 1.08993 * 109.47283 * 64.04105 * 13 11 10 32 32 H 1.07999 * 120.40191 * 180.27252 * 17 16 15 33 33 H 1.08001 * 120.71410 * 179.75865 * 18 17 16 34 34 H 1.08007 * 120.39490 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.03125 * 0.02562 * 22 21 10 36 36 H 1.08006 * 119.96209 * 180.27202 * 23 22 21 37 37 H 1.08004 * 119.92451 * 179.72503 * 24 23 22 38 38 H 1.07999 * 119.96358 * 179.97438 * 25 24 23 39 39 H 1.08000 * 120.03753 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.6418 -4.1254 1.1649 12 8 2.1785 -3.7297 2.2136 13 6 3.7082 -5.1903 1.1663 14 16 3.9948 -5.7548 2.8620 15 6 5.2478 -6.9600 2.5755 16 7 5.6633 -7.1795 1.3361 17 6 6.6061 -8.0732 1.0875 18 6 7.1519 -8.7912 2.1403 19 6 6.6905 -8.5406 3.4232 20 7 5.7487 -7.6298 3.6039 21 6 2.6568 -4.1439 -1.2141 22 6 3.9842 -3.9852 -1.5900 23 6 4.4301 -4.5152 -2.7849 24 6 3.5538 -5.1940 -3.6117 25 6 2.2302 -5.3488 -3.2429 26 6 1.7793 -4.8261 -2.0467 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 3.3828 -6.0310 0.5536 31 1 4.6321 -4.7799 0.7590 32 1 6.9437 -8.2446 0.0761 33 1 7.9203 -9.5296 1.9648 34 1 7.0954 -9.0826 4.2652 35 1 4.6681 -3.4517 -0.9466 36 1 5.4634 -4.3959 -3.0757 37 1 3.9040 -5.6037 -4.5476 38 1 1.5482 -5.8791 -3.8910 39 1 0.7454 -4.9478 -1.7590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006913482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:38 Heat of formation + Delta-G solvation = 52.435853 kcal Electronic energy + Delta-G solvation = -24617.658002 eV Core-core repulsion = 21038.165363 eV Total energy + Delta-G solvation = -3579.492638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.094 amu Computer time = 4.75 seconds Orbital eigenvalues (eV) -40.91686 -39.97249 -38.16597 -34.97267 -33.95168 -32.78506 -32.26687 -30.85813 -30.00109 -29.34381 -26.83795 -24.77097 -24.70201 -23.03732 -22.53288 -22.11289 -19.38111 -18.62446 -17.68284 -16.90698 -16.60174 -16.32742 -16.06785 -15.67480 -15.37471 -15.02694 -14.91863 -14.38334 -14.23750 -14.13841 -13.74980 -13.56857 -13.18465 -12.98214 -12.67434 -12.35902 -12.07751 -11.52127 -11.35534 -11.17742 -11.09791 -11.06011 -10.87072 -10.67051 -10.40707 -10.39104 -10.21930 -9.79861 -9.57419 -9.46618 -8.72044 -8.65136 -8.47880 -7.82286 -7.70165 -6.10135 -4.15168 0.56983 0.88560 1.15849 1.52188 1.61618 2.09130 3.06444 3.28531 3.34984 3.39145 3.47472 3.68237 3.98497 4.00009 4.33403 4.40769 4.47790 4.74619 4.86250 4.89135 5.10538 5.14216 5.24091 5.25326 5.32072 5.48869 5.52679 5.65039 5.78453 5.98099 6.02128 6.22440 6.55970 6.69703 6.70742 6.75109 6.88609 7.14863 7.27550 7.37862 7.68380 7.84602 8.12076 8.16926 8.66699 8.88904 9.49589 10.98246 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003834 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.670150 B = 7300.973635 C = 8621.037441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.248 3.752 10 N -0.553 5.553 11 C 0.531 3.469 12 O -0.514 6.514 13 C -0.147 4.147 14 S 0.091 5.909 15 C 0.281 3.719 16 N -0.526 5.526 17 C 0.164 3.836 18 C -0.247 4.247 19 C 0.162 3.838 20 N -0.505 5.505 21 C 0.159 3.841 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.132 4.132 25 C -0.109 4.109 26 C -0.122 4.122 27 H 0.265 0.735 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 -18.609 -3.305 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.281 5.281 11 C 0.316 3.684 12 O -0.390 6.390 13 C -0.299 4.299 14 S 0.327 5.673 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.006 4.006 18 C -0.274 4.274 19 C -0.008 4.008 20 N -0.221 5.221 21 C 0.067 3.933 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.151 4.151 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.188 0.812 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.268 -17.090 -1.505 20.526 hybrid contribution 1.924 -0.129 -1.592 2.500 sum 13.192 -17.219 -3.096 21.911 Atomic orbital electron populations 1.69926 1.05990 1.27200 1.49986 1.24906 0.94896 0.99218 0.94836 0.86472 0.79881 0.82906 0.78070 1.20571 1.20972 1.19796 1.21351 0.93397 0.90361 1.51726 0.92312 1.19514 0.87088 0.81254 0.99107 1.45850 1.45646 1.34503 1.02062 1.19438 0.82486 0.82080 0.84348 1.90736 1.57225 1.60845 1.30146 1.23914 1.03862 1.02828 0.99306 1.86693 1.36909 1.36125 1.07568 1.25680 0.98662 0.98029 0.86935 1.68938 1.14500 1.19374 1.21631 1.23232 0.88948 0.88278 1.00110 1.22776 1.04868 1.04514 0.95231 1.23264 0.89545 0.91020 0.96922 1.68541 1.11658 1.08118 1.33828 1.17742 0.92634 0.94899 0.88068 1.21345 0.95651 0.99831 0.97239 1.20949 0.99518 0.98081 0.94109 1.21057 0.93769 1.00580 0.99647 1.20958 0.95812 0.99969 0.96076 1.21294 1.00063 0.97797 0.95060 0.92575 0.94406 0.93057 0.86412 0.86045 0.81366 0.83568 0.81248 0.85970 0.86147 0.86387 0.86060 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 6.42 5.15 -5.19 -0.03 6.39 16 10 N -0.55 -11.81 2.51 -114.74 -0.29 -12.09 16 11 C 0.53 11.11 7.59 -10.98 -0.08 11.03 16 12 O -0.51 -12.63 15.42 5.55 0.09 -12.54 16 13 C -0.15 -2.41 3.82 36.01 0.14 -2.28 16 14 S 0.09 1.49 21.39 -107.50 -2.30 -0.81 16 15 C 0.28 4.09 7.85 -90.84 -0.71 3.38 16 16 N -0.53 -6.83 9.14 -13.44 -0.12 -6.95 16 17 C 0.16 1.51 11.30 -17.22 -0.19 1.32 16 18 C -0.25 -1.87 10.16 -39.30 -0.40 -2.27 16 19 C 0.16 1.50 11.30 -17.23 -0.19 1.31 16 20 N -0.50 -6.81 10.40 -13.44 -0.14 -6.95 16 21 C 0.16 2.84 4.45 -83.69 -0.37 2.47 16 22 C -0.12 -1.91 8.44 -39.39 -0.33 -2.25 16 23 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 24 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 25 C -0.11 -1.41 10.04 -39.62 -0.40 -1.81 16 26 C -0.12 -1.94 9.67 -39.39 -0.38 -2.32 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 29 H 0.05 1.48 7.36 -51.93 -0.38 1.09 16 30 H 0.12 1.79 7.87 -51.92 -0.41 1.38 16 31 H 0.12 1.88 6.81 -51.92 -0.35 1.53 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.12 1.94 7.55 -52.49 -0.40 1.55 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -34.10 357.67 -10.28 -44.38 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.45 Total: 0.60 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.17 Total: -2.29 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.19 Total: -51.53 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.30 Total: -0.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.10 -10.28 -44.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006913482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.817 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.75 seconds